Miyakogusa Predicted Gene
- Lj6g3v1690570.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1690570.1 Non Chatacterized Hit- tr|B9RTM5|B9RTM5_RICCO
Pentatricopeptide repeat-containing protein, putative
,29.02,7e-19,seg,NULL; PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; SUBFAMILY NOT NAMED,NULL;
F,gene.g66515.t1.1
(281 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15200.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 241 3e-64
AT5G15010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 129 3e-30
AT3G62470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 100 8e-22
AT3G62540.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 100 9e-22
AT5G14820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 100 1e-21
AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 95 5e-20
AT1G80550.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 87 2e-17
AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 86 4e-17
AT1G80880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 85 7e-17
AT1G71060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 84 1e-16
AT5G65820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 81 8e-16
AT3G04130.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 80 1e-15
AT3G04130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 80 1e-15
AT3G49730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 79 4e-15
AT3G22670.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 78 7e-15
AT5G43820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 75 5e-14
AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 73 2e-13
AT5G18390.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 70 2e-12
AT1G26500.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 70 2e-12
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su... 70 2e-12
AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 67 1e-11
AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 67 1e-11
AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 65 5e-11
AT5G11310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 65 6e-11
AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 64 2e-10
AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 63 2e-10
AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 63 3e-10
AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 63 3e-10
AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 62 4e-10
AT1G05600.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 62 4e-10
AT1G05600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 62 4e-10
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 62 6e-10
AT1G74750.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 62 6e-10
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 61 8e-10
AT1G02420.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 61 8e-10
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su... 61 1e-09
AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 60 1e-09
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 60 2e-09
AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 60 2e-09
AT5G21222.1 | Symbols: | protein kinase family protein | chr5:7... 60 2e-09
AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 59 3e-09
AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 59 4e-09
AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 | chr2:1338720... 59 5e-09
AT5G18475.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 58 6e-09
AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 58 6e-09
AT5G16420.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 58 7e-09
AT1G73400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 58 8e-09
AT1G31840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 57 1e-08
AT1G31840.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 57 1e-08
AT5G61370.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 57 1e-08
AT2G17525.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 57 1e-08
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ... 57 1e-08
AT2G17140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 57 2e-08
AT1G74580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 57 2e-08
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 2e-08
AT1G30290.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 56 3e-08
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381... 56 3e-08
AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 56 3e-08
AT2G15630.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 56 3e-08
AT1G64580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 4e-08
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 4e-08
AT1G12300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 4e-08
AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 4e-08
AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 4e-08
AT1G13040.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 5e-08
AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 6e-08
AT1G64100.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 6e-08
AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:1931... 55 7e-08
AT1G64100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 7e-08
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232... 55 7e-08
AT5G39980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 1e-07
AT5G06400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 1e-07
AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 1e-07
AT5G61400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 2e-07
AT1G18900.3 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 2e-07
AT1G18900.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 2e-07
AT1G18900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 2e-07
AT1G12700.1 | Symbols: | ATP binding;nucleic acid binding;helic... 54 2e-07
AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 53 2e-07
AT1G66345.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 53 2e-07
AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT3G04760.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 53 3e-07
AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 3e-07
AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 5e-07
AT3G49240.1 | Symbols: emb1796 | Pentatricopeptide repeat (PPR) ... 52 5e-07
AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 6e-07
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ... 52 6e-07
AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 7e-07
AT2G01390.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 7e-07
AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 7e-07
AT1G77405.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 7e-07
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ... 51 8e-07
AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 51 8e-07
AT5G60960.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 1e-06
AT1G13630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 1e-06
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 51 1e-06
AT1G13630.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 1e-06
AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 1e-06
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr... 50 1e-06
AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-06
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 2e-06
AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 2e-06
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) sup... 50 2e-06
AT3G06430.1 | Symbols: EMB2750 | Tetratricopeptide repeat (TPR)-... 50 2e-06
AT3G07290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-06
AT1G06710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 2e-06
AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 3e-06
AT1G19720.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 49 3e-06
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr... 49 3e-06
AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 4e-06
AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of... 49 4e-06
AT3G22690.2 | Symbols: | INVOLVED IN: photosystem II assembly, ... 49 5e-06
AT3G54980.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 5e-06
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) ... 48 8e-06
>AT3G15200.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5117489-5119060 REVERSE
LENGTH=523
Length = 523
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 149/225 (66%), Gaps = 5/225 (2%)
Query: 30 PPLFTRRFLHSQPEHAAGAGAFVQNLLKFRRDKPTDQVERALDLCGFXXXXXXXXXXXRR 89
P F RF + + +A V N++K R ++++R LD CG R
Sbjct: 62 PDKFPNRFNDDKDKQSA---LDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNR 118
Query: 90 HRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNE 149
+RSDWKPA + K + +S + NEILD+LGKM RFEE HQVFDEMS R+G VNE
Sbjct: 119 NRSDWKPAYILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNE 178
Query: 150 DTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHS 209
T+ LL R+AAAHKV+EA+ +F R++FG+D DL AF LLMWLCRYKHVE AETLF S
Sbjct: 179 KTYEVLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCS 238
Query: 210 KAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+ REF DIK N+ILNGWCVLGN HEAKR WKDI+ASKCRPD
Sbjct: 239 RRREFGC--DIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPD 281
>AT5G15010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4857241-4858959 FORWARD
LENGTH=572
Length = 572
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 128/252 (50%), Gaps = 17/252 (6%)
Query: 33 FTRRFLHSQPEHAAGAGAFVQNLL---------KFRRDKPTDQVE--RALDLCGFXXXXX 81
FTR + E G + + L K +D +D+ E L+ C
Sbjct: 69 FTRSNIEKDDESDIDLGCSISDELVSEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNE 128
Query: 82 XXXXXXRRHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEM- 140
R R+DW+ A FF WA K Y + R + ++ ILGKM +F+ + DEM
Sbjct: 129 LVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMR 188
Query: 141 SHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHV 200
LVN T ++R++ A H V +AI+ F+ ++F L++ +D F++LL LCRYK+V
Sbjct: 189 KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNV 248
Query: 201 EDAETLFHSKAREFQLHRDIKTWNVILNGWC-VLGNAHEAKRVWKDIMASKCRPDPRKGN 259
DA L ++ D K++N++LNGWC V+G+ EA+RVW ++ + D +
Sbjct: 249 SDAGHLIFCNKDKYPF--DAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVV--S 304
Query: 260 WAPLLSCFAGCG 271
++ ++SC++ G
Sbjct: 305 YSSMISCYSKGG 316
>AT3G62470.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:23106600-23108399 REVERSE
LENGTH=599
Length = 599
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
R R KPA FF WA++ +A SR N ++ IL K +FE + V +EM + GL+
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK-GLLT 228
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
+TF+ ++ FAAA + ++A+ +F +++ + ++ LL L R K ++A+ LF
Sbjct: 229 METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFD 288
Query: 209 SKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
F ++ T+ V+LNGWC + N EA R+W D++ +PD
Sbjct: 289 KLKERFT--PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPD 332
>AT3G62540.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:23133514-23135313 REVERSE
LENGTH=599
Length = 599
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
R R KPA FF WA++ +A SR N ++ IL K +FE + V +EM + GL+
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTK-GLLT 228
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
+TF+ ++ FAAA + ++A+ +F +++ + ++ LL L R K ++A+ LF
Sbjct: 229 METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFD 288
Query: 209 SKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
F ++ T+ V+LNGWC + N EA R+W D++ +PD
Sbjct: 289 KLKERFT--PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPD 332
>AT5G14820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:4792072-4793868 REVERSE
LENGTH=598
Length = 598
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
R R KPA FF WA++ +A SR N ++ IL K +FE + V +EM + GL+
Sbjct: 169 RFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK-GLLT 227
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
+TF+ ++ FAAA + ++A+ +F +++ + ++ LL L R K ++A+ LF
Sbjct: 228 METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFD 287
Query: 209 SKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
F ++ T+ V+LNGWC + N EA R+W D++ +PD
Sbjct: 288 KLKERFT--PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPD 331
>AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29071983-29073536 REVERSE
LENGTH=517
Length = 517
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 3/232 (1%)
Query: 38 LHSQPEHAAGAGAFVQNLLKFRRDKPTDQVERALDLCGFXXXXXXXXXXXRRHRSDWKPA 97
L+S E +N+ K P ++ ALD G R R+
Sbjct: 58 LYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLT 117
Query: 98 LVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLR 157
FF W+ K Y + R + +++ K+ +++ + + + M ++ ++N +TF ++R
Sbjct: 118 YRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAM-RKKKMLNVETFCIVMR 176
Query: 158 RFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLH 217
++A A KV+EAI F E++ L +L AF LL LC+ K+V A+ +F + F
Sbjct: 177 KYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFT-- 234
Query: 218 RDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAG 269
D KT++++L GW N +A+ V+++++ + C PD + + C AG
Sbjct: 235 PDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAG 286
>AT1G80550.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:30285358-30286704 REVERSE
LENGTH=448
Length = 448
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 90 HRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEM-SHREGLVN 148
+ +DW+ AL FFNW + + T+ N ++DILGK FE + + M + E + N
Sbjct: 57 YSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPN 116
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
TF + +R+ AH V+EAI + + F L D +F L+ LC +KHV +AE L
Sbjct: 117 HVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLR-DETSFYNLVDALCEHKHVVEAEELCF 175
Query: 209 SK---AREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDI 246
K F + + K N+IL GW LG + K WK +
Sbjct: 176 GKNVIGNGFSVS-NTKIHNLILRGWSKLGWWGKCKEYWKKM 215
>AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:7029701-7031314 FORWARD
LENGTH=537
Length = 537
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 5/184 (2%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTS-RVCNEILDILGKMSRFEELHQVFDEMSHREGLV 147
RH +L FFNWA+ D Y S NE++D+ GK+ +F+ + D M R +
Sbjct: 125 RHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEI 184
Query: 148 NEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLF 207
+ +TF+ L+RR+ A EA+ F E +G D AF ++ L R + +A++ F
Sbjct: 185 SIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFF 244
Query: 208 HSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCF 267
S F+ D+ + ++ GWC G EA++V+K++ + P+ ++ ++
Sbjct: 245 DSLKDRFE--PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVY--TYSIVIDAL 300
Query: 268 AGCG 271
CG
Sbjct: 301 CRCG 304
>AT1G80880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:30395194-30396921 REVERSE
LENGTH=540
Length = 540
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 14/185 (7%)
Query: 91 RSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNED 150
R +W+ A + F W K + C+ ++ +LG +F + +M + V++D
Sbjct: 134 RDEWRLAFLAFKWGEKRG--CDDQKSCDLMIWVLGNHQKFNIAWCLIRDMFN----VSKD 187
Query: 151 TFSTL---LRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLF 207
T + + R+AAA+ +AI F ++F +AF+ LL LCR+ H+E AE
Sbjct: 188 TRKAMFLMMDRYAAANDTSQAIRTFDIMDKFKHTPYDEAFQGLLCALCRHGHIEKAEEFM 247
Query: 208 HSKAREFQLHRDIKTWNVILNGWC-VLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSC 266
+ + F + D++ +NVILNGWC + + EAKR+W++ M + C P K +++ ++SC
Sbjct: 248 LASKKLFPV--DVEGFNVILNGWCNIWTDVTEAKRIWRE-MGNYC-ITPNKDSYSHMISC 303
Query: 267 FAGCG 271
F+ G
Sbjct: 304 FSKVG 308
>AT1G71060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26805651-26807183 REVERSE
LENGTH=510
Length = 510
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 97 ALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLL 156
AL F WA + T+ N +++ LGK+ +F+ + + D+M ++ L++++TF+ +
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKK-LLSKETFALIS 169
Query: 157 RRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQL 216
RR+A A KV+EAI F+ E+FG ++ F +L L + ++V DA+ +F K ++ +
Sbjct: 170 RRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVF-DKMKKKRF 228
Query: 217 HRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
DIK++ ++L GW N V +++ PD
Sbjct: 229 EPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPD 266
>AT5G65820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:26339876-26341789 REVERSE
LENGTH=637
Length = 637
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Query: 100 FFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHRE-GLVNEDTFSTLLRR 158
FF WA+K Y + V ++ IL KM +F + + +EM L+ + F L++R
Sbjct: 133 FFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQR 192
Query: 159 FAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHR 218
FA+A V++AI + +FG + D F LL LC++ V+DA LF F +
Sbjct: 193 FASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPV-- 250
Query: 219 DIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCG 271
+++ + +L GWC +G EAK V + + PD ++ LLS +A G
Sbjct: 251 NLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIV--DYTNLLSGYANAG 301
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 109 SYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEA 168
+ P + ++ L K+ R EE +VF EM E + T++ L+ F K+++
Sbjct: 317 GFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKC 376
Query: 169 ISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH--SKAREFQLHRDIKTWNVI 226
+ + GL + + T + + ++ E E K R+ + H DI +NV+
Sbjct: 377 YIVLDDMIKKGL---MPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVV 433
Query: 227 LNGWCVLGNAHEAKRVWKDIMASKCRP 253
+ C LG EA R+W ++ + P
Sbjct: 434 IRLACKLGEVKEAVRLWNEMEENGLSP 460
>AT3G04130.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1084136-1085662 FORWARD
LENGTH=508
Length = 508
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
R R DW+ AL WA + +S + +DILGK +++ + + + M + LV
Sbjct: 96 RFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERM-RGDKLVT 154
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
+T + ++RRFA A + EEA+ +F +FGL+ + ++ LL LC+ K VE A +
Sbjct: 155 LNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVL- 213
Query: 209 SKAREFQLHRDIK----TWNVILNGWCVLGNAHEAKRVWKDIMASKCRP 253
QL I T+N+ ++GWC EA +++ RP
Sbjct: 214 -----LQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRP 257
>AT3G04130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1084136-1085662 FORWARD
LENGTH=508
Length = 508
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
R R DW+ AL WA + +S + +DILGK +++ + + + M + LV
Sbjct: 96 RFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERM-RGDKLVT 154
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
+T + ++RRFA A + EEA+ +F +FGL+ + ++ LL LC+ K VE A +
Sbjct: 155 LNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVL- 213
Query: 209 SKAREFQLHRDIK----TWNVILNGWCVLGNAHEAKRVWKDIMASKCRP 253
QL I T+N+ ++GWC EA +++ RP
Sbjct: 214 -----LQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRP 257
>AT3G49730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18445730-18447646 REVERSE
LENGTH=638
Length = 638
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Query: 100 FFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHRE-GLVNEDTFSTLLRR 158
FF WA+K Y + VC ++ IL KM +F + + +EM L+ + F L+RR
Sbjct: 117 FFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRR 176
Query: 159 FAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHR 218
FA+A+ V++A+ + ++GL+ D F LL LC+ V++A +F +F
Sbjct: 177 FASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFP--P 234
Query: 219 DIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCG 271
+++ + +L GWC G EAK V + + PD + LLS +A G
Sbjct: 235 NLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVV--FTNLLSGYAHAG 285
>AT3G22670.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:8017771-8019459 REVERSE
LENGTH=562
Length = 562
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 7/200 (3%)
Query: 59 RRDKPTDQVERALDLCGFXXXXXXXXXXXRRHRSDWKPALVFFNWASKADSYAPTSRVCN 118
++D + V + L C RR + W A FF WA+ Y + N
Sbjct: 111 KKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYN 170
Query: 119 EILDILGKMSRFEELHQVFDEMSHRE--GLVNEDTFSTLLRRFAAAHKVEEAISMFYTRE 176
++D+LGK F+ + ++ +EM+ E LV DT S ++RR A + K +A+ F E
Sbjct: 171 AMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEME 230
Query: 177 Q-FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQ-LHRDIKTWNVILNGWCVLG 234
+ +G+ D A +L+ L + +E A +F + F + D +T+N++++G+C
Sbjct: 231 KSYGVKTDTIAMNSLMDALVKENSIEHAHEVF---LKLFDTIKPDARTFNILIHGFCKAR 287
Query: 235 NAHEAKRVWKDIMASKCRPD 254
+A+ + + ++ PD
Sbjct: 288 KFDDARAMMDLMKVTEFTPD 307
>AT5G43820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:17618948-17620588 FORWARD
LENGTH=546
Length = 546
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 12/208 (5%)
Query: 49 GAFVQNLLKFRRDKPTDQVERALDLCGFXXXXXXXXXXXRRHRSDWKPALVFFNWASKAD 108
G F+Q L K ++++L G R + + FF+WA +
Sbjct: 92 GVFLQKL------KGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREP 145
Query: 109 SYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNED--TFSTLLRRFAAAHKVE 166
+ IL LG+ F + V M EG VN D + + F H V
Sbjct: 146 GVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVC-EG-VNPDLECLTIAMDSFVRVHYVR 203
Query: 167 EAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVI 226
AI +F E FG+ ++F LL LC HV A+++F+ A++ + D ++N++
Sbjct: 204 RAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFN--AKKGNIPFDSCSYNIM 261
Query: 227 LNGWCVLGNAHEAKRVWKDIMASKCRPD 254
++GW LG E ++V K+++ S PD
Sbjct: 262 ISGWSKLGEVEEMEKVLKEMVESGFGPD 289
>AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:5434142-5436244 FORWARD
LENGTH=642
Length = 642
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 120 ILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFG 179
+++ LGK R+E +++F E+ G V+ ++ +++ F K+ EA+ +F + G
Sbjct: 450 LINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQG 509
Query: 180 LDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEA 239
D+ A+ L+ + + + +A +L K E DI + N+ILNG+ G A
Sbjct: 510 SGPDVYAYNALMSGMVKAGMINEANSLLR-KMEENGCRADINSHNIILNGFARTGVPRRA 568
Query: 240 KRVWKDIMASKCRPDPRKGNWAPLLSCFAGCGM 272
+++ I S +PD + LL CFA GM
Sbjct: 569 IEMFETIKHSGIKPDGV--TYNTLLGCFAHAGM 599
>AT5G18390.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:6090954-6092333 FORWARD
LENGTH=459
Length = 459
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 97 ALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLL 156
+L FFNWA SY PTS E+ L ++E + ++ +M ++ +T ++
Sbjct: 94 SLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFII 153
Query: 157 RRFAAAHKVEEAISMFY-TREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQ 215
++ V++A+ +F + G +D + +LL LC K A L R+
Sbjct: 154 EQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRK-G 212
Query: 216 LHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKG 258
L D +T+ +++NGWC G EA+ + D M+ + P +G
Sbjct: 213 LKPDKRTYAILVNGWCSAGKMKEAQE-FLDEMSRRGFNPPARG 254
>AT1G26500.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:9158380-9159897 FORWARD
LENGTH=505
Length = 505
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 94 WKPALVFFNWA-SKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTF 152
W+P FF ++ + + TS N++L I+G + ++ E+ R GLVN+ TF
Sbjct: 91 WRPVHRFFLYSQTHHPDFTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKR-GLVNDKTF 149
Query: 153 STLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAR 212
+L+ A+A ++++ ++ F+ FG +++ + LC+ K VE+A+ +F K +
Sbjct: 150 RIVLKTLASARELKKCVNYFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFVF-IKLK 208
Query: 213 EFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKG 258
EF + D T+ ++ G+C +G+ EA ++W +M D G
Sbjct: 209 EF-IKPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDIEAG 253
>AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28133933-28135381 FORWARD
LENGTH=453
Length = 453
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 151 TFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSK 210
TF+ + R+A+A K ++A+ +F + G DL +F T+L LC+ K VE A LF +
Sbjct: 128 TFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL 187
Query: 211 AREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
F + D T+NVILNGWC++ +A V K+++ P+
Sbjct: 188 RGRFSV--DTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPN 229
>AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%)
Query: 116 VCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTR 175
V N +L+ L K+ R E+ ++FDE + + TF+ L+R K E+A+ +
Sbjct: 173 VVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVM 232
Query: 176 EQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGN 235
FG + D+ + TL+ C+ + A +F D+ T+ +++G+C G
Sbjct: 233 SGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGK 292
Query: 236 AHEAKRVWKDIM 247
EA + D++
Sbjct: 293 MREASSLLDDML 304
>AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%)
Query: 116 VCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTR 175
V N +L+ L K+ R E+ ++FDE + + TF+ L+R K E+A+ +
Sbjct: 173 VVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVM 232
Query: 176 EQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGN 235
FG + D+ + TL+ C+ + A +F D+ T+ +++G+C G
Sbjct: 233 SGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGK 292
Query: 236 AHEAKRVWKDIM 247
EA + D++
Sbjct: 293 MREASSLLDDML 304
>AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4353906-4355840 FORWARD
LENGTH=644
Length = 644
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
+P + ++D K + E Q+ EM R N T+++L+ F +++EEAI
Sbjct: 330 SPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQ 389
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIK---TWNVIL 227
M G D D+ F L+ C+ ++D LF RE L I T+N ++
Sbjct: 390 MVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF----REMSLRGVIANTVTYNTLV 445
Query: 228 NGWCVLGNAHEAKRVWKDIMASKCRPD 254
G+C G AK++++++++ + RPD
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 126 KMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLD 185
K +R ++ ++F EMS R + N T++TL++ F + K+E A +F + D+
Sbjct: 415 KANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIV 474
Query: 186 AFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVW 243
+++ LL LC +E A +F K + ++ DI + +I++G C NA + W
Sbjct: 475 SYKILLDGLCDNGELEKALEIF-GKIEKSKMELDIGIYMIIIHGMC---NASKVDDAW 528
>AT5G11310.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:3606490-3608409 FORWARD
LENGTH=602
Length = 602
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 9/211 (4%)
Query: 52 VQNLLKFRRDKPTDQVERALDLCGFXXXXXXXXXXXRRHRSDWKPALVFFNWASKADSYA 111
+ NLL+ P +E ALD G R S F WA +
Sbjct: 73 ISNLLENTDVVPGSSLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFT 132
Query: 112 PTSRVCNEILDILGKMSRFEEL-HQVFDEMSHREG--LVNEDTFSTLLRRFAAAHKVEEA 168
+ + + +++ L K FE VFD + EG LV+ DTF L+RR+A A V++A
Sbjct: 133 LSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQA 192
Query: 169 ISMFYTREQF----GLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLH--RDIKT 222
I F + +L LL LC+ HV +A + ++
Sbjct: 193 IRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRI 252
Query: 223 WNVILNGWCVLGNAHEAKRVWKDIMASKCRP 253
+N++LNGW +A+++W+++ A +P
Sbjct: 253 FNILLNGWFRSRKLKQAEKLWEEMKAMNVKP 283
>AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:360918-363050 REVERSE
LENGTH=710
Length = 710
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNED-TFSTLLRRFAAAHK 164
K +P+ N +L IL K R H +FDEM G+ + TF+TL+ F
Sbjct: 165 KQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSM 224
Query: 165 VEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKARE-FQLHRDIKTW 223
V+EA +F E + + D+ + T++ LCR V+ A + ++ +H ++ ++
Sbjct: 225 VDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSY 284
Query: 224 NVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGN 259
++ G+C+ EA V+ D+++ +P+ N
Sbjct: 285 TTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYN 320
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 97 ALVFFNWAS-KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHRE-GLV--NEDTF 152
L FF+W S K S+ S +L+ LG+ + R G V + F
Sbjct: 84 GLRFFDWVSNKGFSHKEQSFFL--MLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYF 141
Query: 153 STLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAR 212
++L+R + A +E++ +F T +Q G+ + F +LL L + A LF R
Sbjct: 142 NSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRR 201
Query: 213 EFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCGM 272
+ + D T+N ++NG+C EA R++KD+ C PD N C AG
Sbjct: 202 TYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAG--- 258
Query: 273 RVAIANPML 281
+V IA+ +L
Sbjct: 259 KVKIAHNVL 267
>AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23208247-23209893 REVERSE
LENGTH=548
Length = 548
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N +++ K R E+ ++F EMS R + N T++TL++ F A V++A F +
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHS-KAREFQLHRDIKTWNVILNGWCVLGNA 236
FG+ D+ + LL LC +E A +F + RE L DI T+ ++ G C G
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL--DIVTYTTVIRGMCKTGKV 451
Query: 237 HEAKRVWKDIMASKCRPD 254
EA ++ + +PD
Sbjct: 452 EEAWSLFCSLSLKGLKPD 469
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 129 RFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
R +E +Q+FD M + L + +++TL+ F A +VE+ + +F Q GL + +
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 189 TLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDI 246
TL+ + V+ A+ F S+ F + DI T+N++L G C G +A +++D+
Sbjct: 370 TLIQGFFQAGDVDKAQEFF-SQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
P + +LD K + E ++F+EM + T+S+L+ +++EA
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
MF G D+ ++ TL+ C+ K VED LF ++ L + T+N ++ G+
Sbjct: 317 MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR-GLVSNTVTYNTLIQGF 375
Query: 231 CVLGNAHEAKRVWKDIMASKCRPD 254
G+ +A+ + + PD
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGISPD 399
>AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16478860-16480443 REVERSE
LENGTH=527
Length = 527
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N ++D K +F + ++++EM N T+++L+ F V+EA MFY E
Sbjct: 251 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 310
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
G D+ A+ +L+ C+ K V+DA +F+ +++ L + T+ ++ G+ +G +
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK-GLTGNTITYTTLIQGFGQVGKPN 369
Query: 238 EAKRVWKDIMASKCRPDPRKGNWAPLLSCFAG 269
A+ V+ +++ P+ R N C+ G
Sbjct: 370 VAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNG 401
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 151 TFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSK 210
TF++L+ F +++EEA+SM + G+ D+ + T++ LC+ HV A +LF +
Sbjct: 144 TFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLF-DQ 202
Query: 211 AREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+ + D+ + ++NG C G +A + + + K +PD
Sbjct: 203 MENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPD 246
>AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:19608857-19610428 REVERSE
LENGTH=523
Length = 523
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 105/258 (40%), Gaps = 35/258 (13%)
Query: 3 YHLGARRTTRILETLF--PLNPNPVKSIPPPLFTRRFLHSQPEHAAGAGAFVQNLLKFRR 60
Y ++ RI TL P +P+ V I L R EH L+ +
Sbjct: 14 YQTPKSQSFRIFSTLLHDPPSPDLVNEISRVLSDHRNPKDDLEHT---------LVAYSP 64
Query: 61 DKPTDQVERALDLC---GFXXXXXXXXXXXRRHRSDWKPALVFFNWASKADSYAPTSRVC 117
++ VE+ L C GF PA FF WA + +A +
Sbjct: 65 RVSSNLVEQVLKRCKNLGF-------------------PAHRFFLWARRIPDFAHSLESY 105
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGL-VNEDTFSTLLRRFAAAHKVEEAISMFYTRE 176
+ +++ILG +F L E ++ F + R ++ A+ EA F
Sbjct: 106 HILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMV 165
Query: 177 QFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNA 236
+FG+ +D LL LC KHV A+ F KA+ F + KT+++++ GW + +A
Sbjct: 166 EFGIKPCVDDLDQLLHSLCDKKHVNHAQEFF-GKAKGFGIVPSAKTYSILVRGWARIRDA 224
Query: 237 HEAKRVWKDIMASKCRPD 254
A++V+ +++ C D
Sbjct: 225 SGARKVFDEMLERNCVVD 242
>AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23299060-23300958 FORWARD
LENGTH=632
Length = 632
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 129 RFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
R +E +F+ M ++ N T+STL++ F A +VEE + +F Q GL + +
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYT 437
Query: 189 TLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMA 248
TL+ + + ++A+ +F +H +I T+N++L+G C G +A V++ +
Sbjct: 438 TLIHGFFQARDCDNAQMVFKQMV-SVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR 496
Query: 249 SKCRPDPRKGNWAPLLSCFAG 269
S PD N C AG
Sbjct: 497 STMEPDIYTYNIMIEGMCKAG 517
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 126 KMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLD 185
K R EE ++F EMS R + N T++TL+ F A + A +F G+ ++
Sbjct: 410 KAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 469
Query: 186 AFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKD 245
+ LL LC+ + A +F R + DI T+N+++ G C G + ++ +
Sbjct: 470 TYNILLDGLCKNGKLAKAMVVFEYLQRS-TMEPDIYTYNIMIEGMCKAGKVEDGWELFCN 528
Query: 246 IMASKCRPD 254
+ P+
Sbjct: 529 LSLKGVSPN 537
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Query: 109 SYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEA 168
Y P + ++ L ++ E + D+M R + T+ T++ ++ A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 169 ISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILN 228
+S+ E+ ++ D+ + T++ LC+YKH++DA LF ++ + D+ T++ +++
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLF-TEMDNKGIRPDVFTYSSLIS 301
Query: 229 GWCVLGNAHEAKRVWKDIMASKCRPD 254
C G +A R+ D++ K P+
Sbjct: 302 CLCNYGRWSDASRLLSDMIERKINPN 327
>AT1G05600.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1672161-1673675 FORWARD
LENGTH=504
Length = 504
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%)
Query: 109 SYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEA 168
SY V ++DILGK +R E+ V + M + F++++R F+ A ++E+A
Sbjct: 41 SYGHNGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDA 100
Query: 169 ISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILN 228
IS+F + +F +F TLL + + +E A +F ++++ I N+++
Sbjct: 101 ISLFKSLHEFNCVNWSLSFDTLLQEMVKESELEAACHIFRKYCYGWEVNSRITALNLLMK 160
Query: 229 GWCVLGNAHEAKRVWKDIMASKCRPD 254
C + + A +V++++ C PD
Sbjct: 161 VLCQVNRSDLASQVFQEMNYQGCYPD 186
>AT1G05600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1672161-1673675 FORWARD
LENGTH=504
Length = 504
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%)
Query: 109 SYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEA 168
SY V ++DILGK +R E+ V + M + F++++R F+ A ++E+A
Sbjct: 41 SYGHNGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDA 100
Query: 169 ISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILN 228
IS+F + +F +F TLL + + +E A +F ++++ I N+++
Sbjct: 101 ISLFKSLHEFNCVNWSLSFDTLLQEMVKESELEAACHIFRKYCYGWEVNSRITALNLLMK 160
Query: 229 GWCVLGNAHEAKRVWKDIMASKCRPD 254
C + + A +V++++ C PD
Sbjct: 161 VLCQVNRSDLASQVFQEMNYQGCYPD 186
>AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23388884-23390728 REVERSE
LENGTH=614
Length = 614
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 1/161 (0%)
Query: 109 SYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEA 168
S P N +++ R +E Q+F M ++ L + T++TL+ F A KV +
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDG 399
Query: 169 ISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILN 228
+ +F + GL + + TL+ + ++A+ +F + +H +I T+N +L+
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSD-GVHPNIMTYNTLLD 458
Query: 229 GWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAG 269
G C G +A V++ + SK PD N C AG
Sbjct: 459 GLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P N +++ K + + ++F +MS R + N T++TL+ F A + A +
Sbjct: 378 PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMV 437
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
F G+ ++ + TLL LC+ +E A +F + ++ DI T+N++ G C
Sbjct: 438 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS-KMEPDIYTYNIMSEGMC 496
Query: 232 VLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCGMR 273
G + ++ + +PD N ++S F G++
Sbjct: 497 KAGKVEDGWDLFCSLSLKGVKPDVIAYN--TMISGFCKKGLK 536
>AT1G74750.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28086800-28089367 FORWARD
LENGTH=855
Length = 855
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 96/214 (44%), Gaps = 3/214 (1%)
Query: 42 PEHAAGAGAFVQNLLK-FRRDKPTDQVERALDLCGFXXXXXXXXXXXRRHRSDWKPALVF 100
P G V+N+ RR K E AL GF ++ ++ AL F
Sbjct: 287 PRQHCNPGYVVENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQ-MDNYANALGF 345
Query: 101 FNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFA 160
F W + + ++ LG+ +F E++++ DEM N T++ L+ +
Sbjct: 346 FYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYG 405
Query: 161 AAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDI 220
A+ ++EA+++F ++ G + D + TL+ + ++ A ++ + +E L D
Sbjct: 406 RANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQ-RMQEAGLSPDT 464
Query: 221 KTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
T++VI+N G+ A R++ +++ C P+
Sbjct: 465 FTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPN 498
>AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308423 FORWARD
LENGTH=629
Length = 629
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 129 RFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
R +E +F+ M ++ N T++TL++ F A +VEE + +F Q GL + +
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYN 434
Query: 189 TLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMA 248
TL+ L + + A+ +F + + DI T++++L+G C G +A V++ +
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 493
Query: 249 SKCRPDPRKGNWAPLLSCFAG 269
SK PD N C AG
Sbjct: 494 SKMEPDIYTYNIMIEGMCKAG 514
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P N ++ K R EE ++F EMS R + N T++TL++ A + A +
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
F G+ D+ + LL LC+Y +E A +F + ++ DI T+N+++ G C
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS-KMEPDIYTYNIMIEGMC 511
Query: 232 VLGNAHEA 239
G +
Sbjct: 512 KAGKVEDG 519
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Query: 110 YAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAI 169
Y P + N ++ L ++ E + D M R + T+ T++ ++ A+
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 170 SMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNG 229
S+ E+ ++ D+ + T++ LC YK+V DA LF ++ + ++ T+N ++
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLF-TEMDNKGIRPNVVTYNSLIRC 299
Query: 230 WCVLGNAHEAKRVWKDIMASKCRPD 254
C G +A R+ D++ K P+
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPN 324
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P + ++D K + E +++DEM R + T+S+L+ F +++EA M
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
F ++ + TL+ C+ K VE+ LF ++ L + T+N ++ G
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR-GLVGNTVTYNTLIQGLF 441
Query: 232 VLGNAHEAKRVWKDIMASKCRPD 254
G+ A++++K +++ PD
Sbjct: 442 QAGDCDMAQKIFKKMVSDGVPPD 464
>AT1G02420.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:493683-495158 FORWARD
LENGTH=491
Length = 491
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 97 ALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHRE-GLVNEDTFSTL 155
L F+ +AS + +S + +L ILG+ +F+++ ++ E ++ L++ T +
Sbjct: 91 TLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWELLIETKRKDRSLISPRTMQVV 150
Query: 156 LRRFAAAHKVEEAISMFYTREQFGLDL-DLDAFRTLLMWLCRYKHVEDAETLFHSKAREF 214
L R A V + + F+ ++ D D F LL LC+ K + DA ++HS +F
Sbjct: 151 LGRVAKLCSVRQTVESFWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQF 210
Query: 215 QLHRDIKTWNVILNGW 230
Q D++T+N++L+GW
Sbjct: 211 Q--PDLQTFNILLSGW 224
>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:19900303-19902567 FORWARD
LENGTH=754
Length = 754
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P N ++D L + +E + +M + T++TL+ F A+K EA +
Sbjct: 433 PDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEI 492
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
F E G+ + + TL+ LC+ + VEDA L E Q D T+N +L +C
Sbjct: 493 FDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ-KPDKYTYNSLLTHFC 551
Query: 232 VLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCGMRVAIANPML 281
G+ +A + + + ++ C PD + L+S G RV +A+ +L
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIV--TYGTLISGLCKAG-RVEVASKLL 598
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
R + D AL FN ASK +++P + EIL LG+ F+++ ++ ++M +
Sbjct: 58 RSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMG 117
Query: 149 EDTFSTLLRRFAAAHKVEEAISMF-YTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLF 207
TF L+ +A +E +S+ + ++FGL D + +L L ++ E +
Sbjct: 118 TSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVE-IS 176
Query: 208 HSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPR 256
H+K + + D+ T+NV++ C A + +D+ + PD +
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEK 225
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 1/144 (0%)
Query: 108 DSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEE 167
+ Y P N ++ L K+ +E +V D+M R+ N T++TL+ ++VEE
Sbjct: 324 EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEE 383
Query: 168 AISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVIL 227
A + G+ D+ F +L+ LC ++ A LF + R D T+N+++
Sbjct: 384 ATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE-EMRSKGCEPDEFTYNMLI 442
Query: 228 NGWCVLGNAHEAKRVWKDIMASKC 251
+ C G EA + K + S C
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGC 466
>AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:5690020-5691543 FORWARD
LENGTH=507
Length = 507
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 124 LGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLD 183
+GK+ +EL+ V +MS + T+ +L+ ++EA MFY E+ G +
Sbjct: 271 VGKLMEAKELYNVMIQMSVYPDVF---TYGSLINGLCMYGLLDEARQMFYLMERNGCYPN 327
Query: 184 LDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVW 243
+ TL+ C+ K VED +F+ +++ + I T+ V++ G+C++G A+ V+
Sbjct: 328 EVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTI-TYTVLIQGYCLVGRPDVAQEVF 386
Query: 244 KDIMASKCRPDPRKGN 259
+ + + PD R N
Sbjct: 387 NQMSSRRAPPDIRTYN 402
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 134 HQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMW 193
+VF++MS R + T++ LL KVE+A+ +F + +D+++ + ++
Sbjct: 383 QEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQG 442
Query: 194 LCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDI 246
+C+ VEDA LF S + + ++ T+ +++G+C G HEA ++K +
Sbjct: 443 MCKLGKVEDAFDLFCSLFSK-GMKPNVITYTTMISGFCRRGLIHEADSLFKKM 494
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 151 TFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSK 210
TF++LL + +++E+AI++F G ++ + TL+ LC+ +H+ A LF+
Sbjct: 155 TFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQM 214
Query: 211 AREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGC 270
++ T+N ++ G C +G +A + +D+M K R +P + L+ F
Sbjct: 215 GTNGS-RPNVVTYNALVTGLCEIGRWGDAAWLLRDMM--KRRIEPNVITFTALIDAFVKV 271
Query: 271 G 271
G
Sbjct: 272 G 272
>AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412854-23414746 FORWARD
LENGTH=630
Length = 630
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 129 RFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
R +E +F+ M ++ N T++TL++ F A +V+E + +F Q GL + +
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYT 435
Query: 189 TLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMA 248
TL+ + + ++A+ +F + L DI T++++L+G C G A V++ +
Sbjct: 436 TLIHGFFQARECDNAQIVFKQMVSDGVLP-DIMTYSILLDGLCNNGKVETALVVFEYLQR 494
Query: 249 SKCRPDPRKGNWAPLLSCFAG 269
SK PD N C AG
Sbjct: 495 SKMEPDIYTYNIMIEGMCKAG 515
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P N ++ K R +E ++F EMS R + N T++TL+ F A + + A +
Sbjct: 394 PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIV 453
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
F G+ D+ + LL LC VE A +F R ++ DI T+N+++ G C
Sbjct: 454 FKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS-KMEPDIYTYNIMIEGMC 512
Query: 232 VLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCGMR 273
G + ++ + +P+ + ++S F G++
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVV--TYTTMMSGFCRKGLK 552
>AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:2181717-2184449 FORWARD
LENGTH=871
Length = 871
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 79/166 (47%), Gaps = 3/166 (1%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K + PT ++D L K+ R +E + +F+E + +N +S+L+ F ++
Sbjct: 614 KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI 673
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
+EA + Q GL +L + +LL L + + + +A F S +E + + T+ +
Sbjct: 674 DEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQS-MKELKCTPNQVTYGI 732
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCG 271
++NG C + ++A W+++ +P ++ ++S A G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTI--SYTTMISGLAKAG 776
>AT5G21222.1 | Symbols: | protein kinase family protein |
chr5:7209422-7213700 FORWARD LENGTH=831
Length = 831
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLV-NEDTFSTLLRRFAAAHK 164
K PT+ N ++ GK+ + EE ++ D M E L N+ T + L++ + K
Sbjct: 416 KESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRK 475
Query: 165 VEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWN 224
+EEA ++ Y + +G+ D+ F TL R AE + + ++ +++T
Sbjct: 476 IEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535
Query: 225 VILNGWCVLGNAHEAKR 241
I+NG+C G EA R
Sbjct: 536 TIVNGYCEEGKMEEALR 552
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 95 KPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFST 154
KP +V FN +KA YA C E++ + M H + N T T
Sbjct: 492 KPDVVTFNTLAKA--YARIGSTCTA-----------EDM--IIPRMLHNKVKPNVRTCGT 536
Query: 155 LLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREF 214
++ + K+EEA+ FY ++ G+ +L F +L+ ++ + EF
Sbjct: 537 IVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVV-DLMEEF 595
Query: 215 QLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+ D+ T++ ++N W +G+ + ++ D++ PD
Sbjct: 596 GVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPD 635
>AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:7312262-7314493 REVERSE
LENGTH=743
Length = 743
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N ILD L K + +E H + + R +V+E T+ TL+ F KVE+A+ M+ ++
Sbjct: 455 NTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKK 514
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
+ + F +L+ LC + E A F A E L D T+N I+ G+C G
Sbjct: 515 VKITPTVSTFNSLIGGLCHHGKTELAMEKFDELA-ESGLLPDDSTFNSIILGYCKEGRVE 573
Query: 238 EAKRVWKDIMASKCRPD 254
+A + + + +PD
Sbjct: 574 KAFEFYNESIKHSFKPD 590
>AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23507320-23509053 FORWARD
LENGTH=577
Length = 577
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Query: 129 RFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
R +E +F+ M ++ N T++TL+ F A +++E + +F Q GL + +
Sbjct: 380 RLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYT 439
Query: 189 TLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMA 248
TL+ + + ++A+ +F + +H +I T+N +L+G C G +A V++ +
Sbjct: 440 TLIHGFFQARDCDNAQMVFKQMVSD-GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 498
Query: 249 SKCRPDPRKGNWAPLLSCFAG 269
SK P N C AG
Sbjct: 499 SKMEPTIYTYNIMIEGMCKAG 519
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P N +++ K R +E ++F EMS R + N T++TL+ F A + A +
Sbjct: 398 PNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 457
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
F G+ ++ + TLL LC+ +E A +F R ++ I T+N+++ G C
Sbjct: 458 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMC 516
Query: 232 VLGNAHEAKRVWKDIMASKCRPD 254
G + ++ + +PD
Sbjct: 517 KAGKVEDGWDLFCSLSLKGVKPD 539
>AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 |
chr2:13387201-13390550 REVERSE LENGTH=918
Length = 918
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N +LD + K + + ++ +M + + N ++ST++ FA A + +EA+++F
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
G+ LD ++ TLL + E+A + A + +D+ T+N +L G+ G
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYD 496
Query: 238 EAKRVWKDIMASKCRPD 254
E K+V+ ++ P+
Sbjct: 497 EVKKVFTEMKREHVLPN 513
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N +L GK +++E+ +VF EM L N T+STL+ ++ +EA+ +F +
Sbjct: 483 NALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKS 542
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
GL D+ + L+ LC+ V A +L +E + ++ T+N I++ +
Sbjct: 543 AGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKE-GISPNVVTYNSIIDAF 594
>AT5G18475.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:6129255-6130775 REVERSE
LENGTH=506
Length = 506
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLV-NEDTFSTLLRRFAAAHKVEEAIS 170
P S + ++D L SR +E ++F++M +EG+ + TF+ ++ F A +VE A
Sbjct: 230 PNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKK 289
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
+ ++ G + ++ + L+ C+ +++A+ F + ++ L D + ++N +
Sbjct: 290 ILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTF-DEVKKTGLKLDTVGYTTLMNCF 348
Query: 231 CVLGNAHEAKRVWKDIMASKCRPD 254
C G EA ++ ++ AS+CR D
Sbjct: 349 CRNGETDEAMKLLGEMKASRCRAD 372
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 1/148 (0%)
Query: 92 SDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDT 151
S K A+ F + +P N +++ + E ++ D M N
Sbjct: 246 SRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYN 305
Query: 152 FSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKA 211
+S L+ F K++EA F ++ GL LD + TL+ CR ++A L +
Sbjct: 306 YSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLL-GEM 364
Query: 212 REFQLHRDIKTWNVILNGWCVLGNAHEA 239
+ + D T+NVIL G G + EA
Sbjct: 365 KASRCRADTLTYNVILRGLSSEGRSEEA 392
>AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23301576-23303162 FORWARD LENGTH=528
Length = 528
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Query: 127 MSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDA 186
+ R E Q+ + M ++ L N T++TL+ F A +V++ + +F Q GL +
Sbjct: 371 LDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVT 430
Query: 187 FRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDI 246
+ TL+ + + ++A+ +F +H +I T+N++L+G C G +A V++ +
Sbjct: 431 YTTLIHGFFQARDCDNAQMVFKQMV-SVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 489
Query: 247 MASKCRPDPRKGNWAPLLSCFAG 269
S PD N C AG
Sbjct: 490 QRSTMEPDIYTYNIMIEGMCKAG 512
>AT5G16420.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:5368034-5369641 FORWARD
LENGTH=535
Length = 535
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 124 LGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLD 183
L K + E +FDEM R + + ++ HKV+EA ++ + D
Sbjct: 306 LCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPD 365
Query: 184 LDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHR--DIKTWNVILNGWCVLGNAHEAKR 241
TL+ WLC+ V +A LF EF+ + T+N ++ G C G EA R
Sbjct: 366 NALLSTLIHWLCKEGRVTEARKLFD----EFEKGSIPSLLTYNTLIAGMCEKGELTEAGR 421
Query: 242 VWKDIMASKCRPD 254
+W D+ KC+P+
Sbjct: 422 LWDDMYERKCKPN 434
>AT1G73400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:27598106-27599812 FORWARD
LENGTH=568
Length = 568
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 13/215 (6%)
Query: 65 DQVERALDLCGFXXXXXXXXXXXRRHRSDWKPALVFFNWASKADSYAPTSRVCNEILDIL 124
D +E+ALD +R + + K A FF WA + Y+ NE++DIL
Sbjct: 110 DDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 169
Query: 125 G----KMSRFEELHQVFDEMS-HREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFG 179
K +F + + D M + + +V D +LR++ + + F R++
Sbjct: 170 SSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTH--VQKFAKRKRIR 227
Query: 180 LDL--DLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
+ +++AF LL LC+ V++ E L + ++ D T+NV+ GWC + +
Sbjct: 228 VKTQPEINAFNMLLDALCKCGLVKEGEALL--RRMRHRVKPDANTFNVLFFGWCRVRDPK 285
Query: 238 EAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCGM 272
+A ++ ++++ + +P+ + + F GM
Sbjct: 286 KAMKLLEEMIEAGHKPE--NFTYCAAIDTFCQAGM 318
>AT1G31840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:11424006-11426528 FORWARD
LENGTH=840
Length = 840
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 76/149 (51%), Gaps = 1/149 (0%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K + P + ++ +L K + + ++F M+ + N T+ L+ F+ + +
Sbjct: 663 KVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDI 722
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
E + +F ++ G+ + ++ ++ LC+ V++A +FH +A + +L D+ + +
Sbjct: 723 EGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFH-QAIDAKLLPDVVAYAI 781
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
++ G+C +G EA +++ ++ + +PD
Sbjct: 782 LIRGYCKVGRLVEAALLYEHMLRNGVKPD 810
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 36/174 (20%)
Query: 116 VCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTR 175
V N ++D +++RF+E +VF M + TF+T++R ++EEA+ +F+
Sbjct: 498 VFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRM 557
Query: 176 EQFGLDLDLDAFRTLLMWLCRYKH-----------------------------------V 200
+ GL+ D A+ TL+ C++ +
Sbjct: 558 FKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRI 617
Query: 201 EDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
EDA F++ E ++ DI T+N ++ G+C L EA+R+++ + + P+
Sbjct: 618 EDASKFFNNLI-EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPN 670
>AT1G31840.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:11424006-11426528 FORWARD
LENGTH=811
Length = 811
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 76/149 (51%), Gaps = 1/149 (0%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K + P + ++ +L K + + ++F M+ + N T+ L+ F+ + +
Sbjct: 634 KVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDI 693
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
E + +F ++ G+ + ++ ++ LC+ V++A +FH +A + +L D+ + +
Sbjct: 694 EGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFH-QAIDAKLLPDVVAYAI 752
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
++ G+C +G EA +++ ++ + +PD
Sbjct: 753 LIRGYCKVGRLVEAALLYEHMLRNGVKPD 781
>AT5G61370.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24672008-24673471 REVERSE
LENGTH=487
Length = 487
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 98 LVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLR 157
L FF+W+ K+ + + N +L +L + + + ++ +++ TFS +
Sbjct: 87 LRFFSWSCKSLGSSLHDKEFNYVLRVLAEKKDHTAMQILLSDLRKENRAMDKQTFSIVAE 146
Query: 158 RFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLH 217
K E+AI +F ++F D ++ LC HV+ A + H ++
Sbjct: 147 TLVKVGKEEDAIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHH-KDVISG 205
Query: 218 RDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
++ + +L GW V N EA+RV +D+ ++ PD
Sbjct: 206 NELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPD 242
>AT2G17525.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:7624178-7626058 FORWARD
LENGTH=626
Length = 626
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 97 ALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNED-TFSTL 155
AL F WAS + + + L RF+ ++Q+ DEM GL +D F T+
Sbjct: 59 ALETFRWASTFPGFIHSRSTYRALFHKLCVFRRFDTVYQLLDEMPDSIGLPPDDAIFVTI 118
Query: 156 LRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQ 215
+R F A ++ IS+ +FG+ L F ++L L + + ++ A F K
Sbjct: 119 IRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVK-EDIDIAREFFTRKMMASG 177
Query: 216 LHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+H D+ T+ +++ G + + ++ + + S P+
Sbjct: 178 IHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPN 216
>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:6204940-6209691 REVERSE
LENGTH=1440
Length = 1440
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 2/173 (1%)
Query: 94 WKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFS 153
++ A FN + D +PT N +L L R EEL+ V +E+ +++ +
Sbjct: 803 YERARAIFNTMMR-DGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSIL 861
Query: 154 TLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKARE 213
+L FA A + E ++ + + G + +R ++ LC+ K V DAE + S+ E
Sbjct: 862 LMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMV-SEMEE 920
Query: 214 FQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSC 266
++ WN +L + + + + +V++ I + PD N ++ C
Sbjct: 921 ANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYC 973
>AT2G17140.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:7462820-7465740 FORWARD
LENGTH=874
Length = 874
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 3/164 (1%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
AP + N ++ L S + ++FDEM + NE TF L+R + A ++ +
Sbjct: 144 APQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLE 203
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
+ E FG+ + + T++ CR +D+E + K RE L DI T+N ++
Sbjct: 204 LLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVE-KMREEGLVPDIVTFNSRISAL 262
Query: 231 CVLGNAHEAKRVWKDIMASKC--RPDPRKGNWAPLLSCFAGCGM 272
C G +A R++ D+ + P P + +L F G+
Sbjct: 263 CKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGL 306
>AT1G74580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28020777-28023068 FORWARD
LENGTH=763
Length = 763
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 69/143 (48%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P N +L+ L K S+FE++ + + M + N TF+ LL K++EA+ +
Sbjct: 494 PDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGL 553
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
+ ++ D F TL+ C+ ++ A TLF +++ T+N+I++ +
Sbjct: 554 LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFT 613
Query: 232 VLGNAHEAKRVWKDIMASKCRPD 254
N A++++++++ PD
Sbjct: 614 EKLNVTMAEKLFQEMVDRCLGPD 636
>AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE LENGTH=590
Length = 590
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 93 DWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEM-SHREGLVNEDT 151
+ P LVFFN ++D K + E +++DEM + +
Sbjct: 315 NINPDLVFFN----------------ALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVA 358
Query: 152 FSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKA 211
++TL++ F +VEE + +F Q GL + + TL+ + + ++A+ +F
Sbjct: 359 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 418
Query: 212 REFQLHRDIKTWNVILNGWCVLGNAHEAKRVWK 244
+ +H DI T+N++L+G C GN A V++
Sbjct: 419 SD-GVHPDIMTYNILLDGLCNNGNVETALVVFE 450
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 5/163 (3%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P N ++ K R EE +VF EMS R + N T++TL+ F A + A +
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLF-HSKAREFQLHRDIKTWNVILNGW 230
F G+ D+ + LL LC +VE A +F + + R+ +L DI T+ ++
Sbjct: 414 FKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL--DIVTYTTMIEAL 471
Query: 231 CVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCGMR 273
C G + ++ + +P+ + ++S F G++
Sbjct: 472 CKAGKVEDGWDLFCSLSLKGVKPNVV--TYTTMMSGFCRKGLK 512
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 77/199 (38%), Gaps = 37/199 (18%)
Query: 91 RSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNED 150
RS AL K Y P+ N +L+ +R E + D+M +
Sbjct: 123 RSQLSLALAILGKMMKL-GYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTV 181
Query: 151 TFSTLLRRFAAAHKVEEAISM-----------------------------------FYTR 175
TF+TL+ +K EA+++
Sbjct: 182 TFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM 241
Query: 176 EQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGN 235
E+ ++ D+ + T++ LC+YKH++DA LF+ K + D+ T+N +++ C G
Sbjct: 242 EKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFN-KMETKGIKPDVFTYNPLISCLCNYGR 300
Query: 236 AHEAKRVWKDIMASKCRPD 254
+A R+ D++ PD
Sbjct: 301 WSDASRLLSDMLEKNINPD 319
>AT1G30290.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:10670320-10672740 REVERSE
LENGTH=806
Length = 806
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P +CN +D+ + +R E+ + + M + N T++ ++R + H+VEEAI +
Sbjct: 275 PNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIEL 334
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
G D ++ T++ +LC+ K + + L A+E L D T+N +++
Sbjct: 335 LEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLT 394
Query: 232 VLGNAHEAKRVWKDIMASKCRPD 254
+A EA KD R D
Sbjct: 395 KHDHADEALWFLKDAQEKGFRID 417
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 120 ILDILGKMSRFEELHQVFDEMSHREGLV-NEDTFSTLLRRFAAAHKVEEAISMFYTREQF 178
I+ L K R E+ + +M+ GLV ++ T++TL+ +EA+ ++
Sbjct: 353 IMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEK 412
Query: 179 GLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHE 238
G +D + ++ LC+ + +A+ L + + D+ T+ ++NG+C LG +
Sbjct: 413 GFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDK 472
Query: 239 AKRVWKDIMASKCRPD 254
AK++ + + +P+
Sbjct: 473 AKKLLQVMHTHGHKPN 488
>AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION |
chr2:16381647-16384250 FORWARD LENGTH=867
Length = 867
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K Y+ + N I+D K+ + + + EMS N TF++L+ F ++++
Sbjct: 582 KEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRM 641
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
+ A+ M + + L LDL A+ L+ C+ ++ A TLF S+ E L ++ +N
Sbjct: 642 DLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLF-SELPELGLMPNVSVYNS 700
Query: 226 ILNGWCVLGNAHEAKRVWKDIM 247
+++G+ LG A ++K ++
Sbjct: 701 LISGFRNLGKMDAAIDLYKKMV 722
>AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:25723247-25725439 REVERSE
LENGTH=730
Length = 730
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 108 DSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEE 167
D +AP++ CN +++ L + EE + EM R + TF++L+ A ++E+
Sbjct: 593 DGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIED 652
Query: 168 AISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVIL 227
++MF + G+ D F TL+ WLC+ V DA L + E + +TW+++L
Sbjct: 653 GLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA-CLLLDEGIEDGFVPNHRTWSILL 711
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 15/163 (9%)
Query: 94 WKPALVFF---------NWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHRE 144
WK LV N K + Y+ T ++D K+ + +E + V +EMS
Sbjct: 400 WKEGLVGLALEVLHDMRNKGCKPNVYSYTI-----LVDGFCKLGKIDEAYNVLNEMSADG 454
Query: 145 GLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAE 204
N F+ L+ F H++ EA+ +F + G D+ F +L+ LC ++ A
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 514
Query: 205 TLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIM 247
L E + + T+N ++N + G EA+++ +++
Sbjct: 515 WLLRDMISEGVVANTV-TYNTLINAFLRRGEIKEARKLVNEMV 556
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 144 EGLV-NEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVED 202
EG+V N T++TL+ F +++EA + G LD + +L+ LCR V+
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582
Query: 203 AETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
A +LF R+ +I + N+++NG C G EA K+++ PD
Sbjct: 583 ARSLFEKMLRDGHAPSNI-SCNILINGLCRSGMVEEAVEFQKEMVLRGSTPD 633
>AT2G15630.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:6814521-6816404 FORWARD
LENGTH=627
Length = 627
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 103 WASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAA 162
+ K + P + CN IL +L +++R E + +M E N TF+ ++
Sbjct: 179 YLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKE 238
Query: 163 HKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHS-KAREFQLHRDIK 221
K+++A E FG+ + + TL+ +E A + K++ FQ D++
Sbjct: 239 GKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQ--PDMQ 296
Query: 222 TWNVILNGWCVLGNAHEAKRVWKDI 246
T+N IL+ C G A E R K+I
Sbjct: 297 TYNPILSWMCNEGRASEVLREMKEI 321
>AT1G64580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23985078-23986649 REVERSE
LENGTH=523
Length = 523
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Query: 120 ILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFG 179
++D K E ++ EM R + N T+++L+ F + +A MF G
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319
Query: 180 LDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEA 239
D+ + TL+ C+ K VED LF + L D T+N +++G+C G + A
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQ-GLVGDAFTYNTLIHGYCQAGKLNVA 378
Query: 240 KRVWKDIMASKCRPDPRKGNWAPLLSCFAGCG 271
++V+ ++ C P + LL C G
Sbjct: 379 QKVFNRMV--DCGVSPDIVTYNILLDCLCNNG 408
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNED-TFSTLLRRFAAAHKVEEAISMFYTRE 176
N ++ K R E+ ++F EM++ +GLV + T++TL+ + A K+ A +F
Sbjct: 328 NTLITGFCKSKRVEDGMKLFCEMTY-QGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV 386
Query: 177 QFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNA 236
G+ D+ + LL LC +E A + + ++ DI T+N+I+ G C
Sbjct: 387 DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS-EMDVDIITYNIIIQGLCRTDKL 445
Query: 237 HEAKRVWKDIMASKCRPD 254
EA +++ + +PD
Sbjct: 446 KEAWCLFRSLTRKGVKPD 463
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
PT N +++ L + + E+ ++ DEM+ NE T++ +++ +A+ +A
Sbjct: 621 VPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFE 680
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
F + GLD+D+ + LL C+ ++ A + + + R+ +N++++GW
Sbjct: 681 YFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR-NIPRNSFVYNILIDGW 739
Query: 231 CVLGNAHEAKRVWKDIMASKCRPD 254
G+ EA + + + +PD
Sbjct: 740 ARRGDVWEAADLIQQMKKEGVKPD 763
>AT1G12300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4184163-4186076 REVERSE
LENGTH=637
Length = 637
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 125 GKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDL 184
GK+ EELH EM HR + T+++L+ F + +++A M G D ++
Sbjct: 347 GKLREAEELH---KEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNI 403
Query: 185 DAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWK 244
F L+ C+ ++D LF K + D T+N ++ G+C LG + AK +++
Sbjct: 404 RTFNILINGYCKANRIDDGLELFR-KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQ 462
Query: 245 DIMASKCRPD 254
++++ K P+
Sbjct: 463 EMVSRKVPPN 472
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
AP + ++D K + ++ +Q+ D M + N TF+ L+ + A+++++ +
Sbjct: 365 APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLE 424
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
+F G+ D + TL+ C + A+ LF ++ +I T+ ++L+G
Sbjct: 425 LFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR-KVPPNIVTYKILLDGL 483
Query: 231 CVLGNAHEAKRVWKDIMASKCRPD 254
C G + +A +++ I SK D
Sbjct: 484 CDNGESEKALEIFEKIEKSKMELD 507
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 124 LGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLD 183
LGK++ +EL F EM R+ N T+ LL + E+A+ +F E+ ++LD
Sbjct: 451 LGKLNVAKEL---FQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELD 507
Query: 184 LDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVW 243
+ + ++ +C V+DA LF S + + +KT+N+++ G C G EA+ ++
Sbjct: 508 IGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 244 KDIMASKCRPD 254
+ + PD
Sbjct: 567 RKMEEDGHAPD 577
>AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K P S + I+ +L ++ + E + F EM + L + ++TL+ F +
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
A FY + D+ + ++ C+ + +A LFH + L D T+
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK-GLEPDSVTFTE 426
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
++NG+C G+ +A RV ++ + C P+
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPN 455
>AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K P S + I+ +L ++ + E + F EM + L + ++TL+ F +
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
A FY + D+ + ++ C+ + +A LFH + L D T+
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK-GLEPDSVTFTE 426
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
++NG+C G+ +A RV ++ + C P+
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPN 455
>AT1G13040.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:4447647-4449200 FORWARD
LENGTH=517
Length = 517
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
+ +++ + S + +++F+EM + ++N T+++L++ F A + +
Sbjct: 329 STLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTE 388
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
GL D + T+L LC+ +V+ A +F+ E ++ D ++N +++G C G
Sbjct: 389 LGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMI-EHEITPDAISYNSLISGLCRSGRVT 447
Query: 238 EAKRVWKDIMASKCRPD 254
EA ++++D+ +C PD
Sbjct: 448 EAIKLFEDMKGKECCPD 464
>AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24123983-24126706 REVERSE
LENGTH=907
Length = 907
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
+P V N ++D L K +F E +FD M N+ T+S L+ F K++ A+S
Sbjct: 364 SPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALS 423
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
GL L + + +L+ C++ + AE F ++ +L + T+ ++ G+
Sbjct: 424 FLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEG-FMAEMINKKLEPTVVTYTSLMGGY 482
Query: 231 CVLGNAHEAKRVWKDIMASKCRP 253
C G ++A R++ ++ P
Sbjct: 483 CSKGKINKALRLYHEMTGKGIAP 505
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 112 PTSRVCNEI-----LDILGK----MSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAA 162
P S V N++ LDIL K M + ELH + L N T++ L+R F
Sbjct: 745 PVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAI----LKGLLANTATYNMLIRGFCRQ 800
Query: 163 HKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKT 222
++EEA + G+ D + T++ LCR V+ A L++S E + D
Sbjct: 801 GRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMT-EKGIRPDRVA 859
Query: 223 WNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPR 256
+N +++G CV G +A + +++ P+ +
Sbjct: 860 YNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNK 893
>AT1G64100.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23791585-23795563 FORWARD LENGTH=806
Length = 806
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 97 ALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLL 156
A+ FF++ ++ + T+ CN+++ + +M+R + ++ +M R +N +F+ L+
Sbjct: 90 AIDFFDYMVRSRPFY-TAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148
Query: 157 RRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLF--------- 207
+ F HK+ ++S F + G D+ F TLL LC + +A LF
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFL 208
Query: 208 -----HSKAREFQLHRDIKTWNVILNGWCVLGNAHEA 239
+ E L + T+N ++NG C+ G EA
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEA 245
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 3/159 (1%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
+P N I+D+ + R +E Q+ E+S R + N T++TL+ F + A
Sbjct: 429 SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
+F G+ D LL C + +E+A LF + ++ D +N+I++G
Sbjct: 489 LFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV-IQMSKIDLDTVAYNIIIHGM 547
Query: 231 CVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAG 269
C EA ++ + PD + N ++S F G
Sbjct: 548 CKGSKVDEAWDLFCSLPIHGVEPDVQTYN--VMISGFCG 584
>AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 |
chr1:19312078-19314145 REVERSE LENGTH=650
Length = 650
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 113 TSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMF 172
T + + ++ L K+ E H++F +M D++ ++L A K EAI M
Sbjct: 371 TQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEML 430
Query: 173 YTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCV 232
+ G+ D + T+ L + K + LF K ++ DI T+N+++ +
Sbjct: 431 SKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFE-KMKKDGPSPDIFTYNILIASFGR 489
Query: 233 LGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCG 271
+G EA +++++ S C+PD ++ L++C G
Sbjct: 490 VGEVDEAINIFEELERSDCKPDII--SYNSLINCLGKNG 526
>AT1G64100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23791585-23793641 FORWARD LENGTH=666
Length = 666
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 97 ALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLL 156
A+ FF++ ++ + T+ CN+++ + +M+R + ++ +M R +N +F+ L+
Sbjct: 90 AIDFFDYMVRSRPFY-TAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148
Query: 157 RRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLF--------- 207
+ F HK+ ++S F + G D+ F TLL LC + +A LF
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFL 208
Query: 208 -----HSKAREFQLHRDIKTWNVILNGWCVLGNAHEA 239
+ E L + T+N ++NG C+ G EA
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEA 245
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 3/159 (1%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
+P N I+D+ + R +E Q+ E+S R + N T++TL+ F + A
Sbjct: 429 SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
+F G+ D LL C + +E+A LF + ++ D +N+I++G
Sbjct: 489 LFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV-IQMSKIDLDTVAYNIIIHGM 547
Query: 231 CVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAG 269
C EA ++ + PD + + ++S F G
Sbjct: 548 CKGSKVDEAWDLFCSLPIHGVEPDVQ--TYNVMISGFCG 584
>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
chr1:23204773-23206665 REVERSE LENGTH=630
Length = 630
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P N ++ K R EE +VF EMS R + N T++ L++ A + A +
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
F G+ ++ + TLL LC+ +E A +F R ++ I T+N+++ G C
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMC 512
Query: 232 VLGNAHEAKRVWKDIMASKCRPD 254
G + ++ ++ +PD
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPD 535
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 120 ILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFG 179
++D K + E +++DEM R + T+S+L+ F +++EA MF
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391
Query: 180 LDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEA 239
D+ + TL+ C+YK VE+ +F ++ L + T+N+++ G G+ A
Sbjct: 392 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR-GLVGNTVTYNILIQGLFQAGDCDMA 450
Query: 240 KRVWKDIMASKCRPD 254
+ ++K++++ P+
Sbjct: 451 QEIFKEMVSDGVPPN 465
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 129 RFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
R +E Q+F+ M + + T++TL++ F +VEE + +F Q GL + +
Sbjct: 376 RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 435
Query: 189 TLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMA 248
L+ L + + A+ +F + + +I T+N +L+G C G +A V++ +
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494
Query: 249 SKCRPDPRKGNWAPLLSCFAG 269
SK P N C AG
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAG 515
>AT5G39980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:16001036-16003072 REVERSE
LENGTH=678
Length = 678
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 3/177 (1%)
Query: 92 SDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDT 151
+DW+ +L +W + Y P+ N +L + + +F+ H +FDEM R + T
Sbjct: 133 NDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYT 192
Query: 152 FSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKA 211
+STL+ F + A+S EQ + DL + L+ R A ++F S+
Sbjct: 193 YSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIF-SRL 251
Query: 212 REFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFA 268
+ + D+ +N ++N + EA+ + K++ + P+ +++ LLS +
Sbjct: 252 KRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNT--VSYSTLLSVYV 306
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
R D+ A+ F+ ++ P N ++++ GK F E + EM+ L N
Sbjct: 236 RRLCDYSKAISIFSRLKRS-GITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPN 294
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
++STLL + HK EA+S+F ++ LDL ++ + V++A+ LF
Sbjct: 295 TVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFW 354
Query: 209 SKAREFQLHRDIKTWNVILNGW 230
S R+ + ++ ++N IL +
Sbjct: 355 S-LRKMDIEPNVVSYNTILRVY 375
>AT5G06400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:1955959-1959051 FORWARD
LENGTH=1030
Length = 1030
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 98 LVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLR 157
L FF+W K + Y S N + + G F+++ +F EM + L+ +DT++ ++
Sbjct: 662 LRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIM 721
Query: 158 RFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYK--HVEDAETLFHSKARE-F 214
++ AI F + GL F+ L+ LC K +VE+A F R F
Sbjct: 722 QYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTFREMIRSGF 781
Query: 215 QLHRDIKTWNVILNGWCVLGNAHEAK 240
R++ L C +GN +AK
Sbjct: 782 VPDRELV--QDYLGCLCEVGNTKDAK 805
>AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23419399-23421288 FORWARD
LENGTH=629
Length = 629
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 109 SYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEA 168
S P + N +++ +R +E Q+F M ++ L N T++TL+ F +VE+
Sbjct: 358 SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDG 417
Query: 169 ISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILN 228
+ +F Q GL + + T++ + + A+ +F ++ DI T++++L+
Sbjct: 418 VELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSN-RVPTDIMTYSILLH 476
Query: 229 GWCVLGNAHEAKRVWKDIMASK 250
G C G A ++K + S+
Sbjct: 477 GLCSYGKLDTALVIFKYLQKSE 498
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P N ++D K + E ++ +EM R + T++ L+ F ++++EA M
Sbjct: 326 PNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQM 385
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
F ++ + TL+ C+ K VED LF ++ L + T+ I+ G+
Sbjct: 386 FKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQR-GLVGNTVTYTTIIQGFF 444
Query: 232 VLGNAHEAKRVWKDIMASKCRPD 254
G+ A+ V+K +++++ D
Sbjct: 445 QAGDCDSAQMVFKQMVSNRVPTD 467
>AT5G61400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24681550-24683514 FORWARD
LENGTH=654
Length = 654
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K P + ++D K + + ++ E+ E L N F TL+ F A ++
Sbjct: 261 KKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKAREL 320
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
A S+F +FG+D +L + L+ C+ ++ +A L S+ L D+ T+ +
Sbjct: 321 VTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLL-SEMESLNLSPDVFTYTI 379
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGN 259
++NG C+ EA R+++ + + P N
Sbjct: 380 LINGLCIEDQVAEANRLFQKMKNERIFPSSATYN 413
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 103 WASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAA 162
W S+ +P S+ C IL+ L + RF+ + + M R + + + L +
Sbjct: 153 WVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQ 212
Query: 163 HKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKT 222
+ + G+ ++ + ++ LCR +E+AE +F + L ++ T
Sbjct: 213 GLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVL-PNLYT 271
Query: 223 WNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
++ +++G+C GN +A ++K+I+ ++ P+
Sbjct: 272 YSAMIDGYCKTGNVRQAYGLYKEILVAELLPN 303
>AT1G18900.3 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532541 FORWARD
LENGTH=886
Length = 886
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 78/166 (46%), Gaps = 1/166 (0%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
+ +D+ AL FF W + + ++ LG+ +F ++++ DEM N
Sbjct: 339 KQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPN 398
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
T++ L+ + A+ + EA+++F ++ G D + TL+ + ++ A ++
Sbjct: 399 TVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQ 458
Query: 209 SKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+ + L D T++VI+N G+ A +++ +++ C P+
Sbjct: 459 -RMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPN 503
>AT1G18900.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532360 FORWARD
LENGTH=860
Length = 860
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 78/166 (46%), Gaps = 1/166 (0%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
+ +D+ AL FF W + + ++ LG+ +F ++++ DEM N
Sbjct: 339 KQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPN 398
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
T++ L+ + A+ + EA+++F ++ G D + TL+ + ++ A ++
Sbjct: 399 TVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQ 458
Query: 209 SKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+ + L D T++VI+N G+ A +++ +++ C P+
Sbjct: 459 -RMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPN 503
>AT1G18900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532360 FORWARD
LENGTH=860
Length = 860
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 78/166 (46%), Gaps = 1/166 (0%)
Query: 89 RHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVN 148
+ +D+ AL FF W + + ++ LG+ +F ++++ DEM N
Sbjct: 339 KQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPN 398
Query: 149 EDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
T++ L+ + A+ + EA+++F ++ G D + TL+ + ++ A ++
Sbjct: 399 TVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQ 458
Query: 209 SKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+ + L D T++VI+N G+ A +++ +++ C P+
Sbjct: 459 -RMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPN 503
>AT1G12700.1 | Symbols: | ATP binding;nucleic acid
binding;helicases | chr1:4323722-4326227 REVERSE
LENGTH=735
Length = 735
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N +LD+ K + +E ++++ EM R N T++TL+ + +++ EA +M +
Sbjct: 302 NVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR 361
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
D+ F +L+ C K V+D +F + ++ L + T+++++ G+C G
Sbjct: 362 NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKR-GLVANAVTYSILVQGFCQSGKIK 420
Query: 238 EAKRVWKDIMASKCRPD 254
A+ +++++++ PD
Sbjct: 421 LAEELFQEMVSHGVLPD 437
>AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Pentatricopeptide repeat (PPR) superfamily
protein (TAIR:AT5G46100.1); Has 40053 Blast hits to
12380 proteins in 263 species: Archae - 4; Bacteria -
27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses
- 0; Other Eukaryotes - 935 (source: NCBI BLink). |
chr4:575843-577243 REVERSE LENGTH=466
Length = 466
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 2/165 (1%)
Query: 90 HRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNE 149
HR + A F +S+ P +R N ++ +Q+F +M R+ + +
Sbjct: 167 HRGYLQKAFELFK-SSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDV 225
Query: 150 DTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHS 209
D++ L++ F +V A+ + G D ++ TLL LCR + +A L
Sbjct: 226 DSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLL-C 284
Query: 210 KAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+ + + D+ +N ++ G+C A +A++V D++++ C P+
Sbjct: 285 RMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPN 329
>AT1G66345.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:24737719-24739353 FORWARD
LENGTH=544
Length = 544
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 101 FNWASKADSYA---------PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDT 151
F W K Y P+ NE++ + K+ +++ + + + +E T
Sbjct: 387 FGWEEKGLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPDEHT 446
Query: 152 FSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH-SK 210
+S L+R F + +++A+ +FY E + + FR+L++ LC VE E K
Sbjct: 447 YSHLIRGFIEGNDIDQALKLFYEMEYRKMSPGFEVFRSLIVGLCTCGKVEAGEKYLKIMK 506
Query: 211 AREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASK 250
R + + DI ++ ++ + +G+ A RV+ ++++ +
Sbjct: 507 KRLIEPNADI--YDALIKAFQKIGDKTNADRVYNEMISVR 544
>AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:7056254-7057954 FORWARD
LENGTH=566
Length = 566
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
+ D P N +++ L K R ++ QVFDEM R N T++TL+ K+
Sbjct: 260 QEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKL 319
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHS-KAREFQLHRDIKTWN 224
EA + + G++ +L + TL+ C + A +L K+R L + T+N
Sbjct: 320 NEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSR--GLSPSLVTYN 377
Query: 225 VILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFA 268
++++G+C G+ A ++ K++ +P K + L+ FA
Sbjct: 378 ILVSGFCRKGDTSGAAKMVKEMEERGIKPS--KVTYTILIDTFA 419
>AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23489840-23491519 FORWARD
LENGTH=559
Length = 559
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 129 RFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
R ++ Q+F+ M ++ + DT++TL++ F + +VE+ +F GL D +
Sbjct: 305 RLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYT 364
Query: 189 TLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMA 248
TL+ L ++A+ +F + + DI T++++L+G C G +A V+ +
Sbjct: 365 TLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423
Query: 249 SKCRPD 254
S+ + D
Sbjct: 424 SEIKLD 429
>AT3G04760.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:1303884-1305692 REVERSE
LENGTH=602
Length = 602
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 107 ADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVE 166
+D P N +L L K + ++ ++F ++ N +++T+ ++
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 455
Query: 167 EAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDA-ETLFHSKAREFQLHRDIKTWNV 225
A+ M G+D D + +++ LCR V++A E L ++ EF H + T+N+
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEF--HPSVVTYNI 513
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+L G+C +A V + ++ + CRP+
Sbjct: 514 VLLGFCKAHRIEDAINVLESMVGNGCRPN 542
>AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:3911388-3913838 FORWARD LENGTH=816
Length = 816
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Query: 92 SDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDT 151
SD L FN K D P+ + N ++D L K R + Q+FDEM R L + T
Sbjct: 193 SDVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLIT 251
Query: 152 FSTLLRRFAAAHKVEEAISMFYTREQFGLD---LDLDAFRTLLMWLCRYKHVEDAETLFH 208
++TL+ + A E++ F RE+ D L F TLL L + VEDAE +
Sbjct: 252 YNTLIDGYCKAGNPEKS---FKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLK 308
Query: 209 SKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCR 252
+ ++ D T++++ +G+ A A V++ + S +
Sbjct: 309 -EMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVK 351
>AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:7966066-7967925 REVERSE
LENGTH=619
Length = 619
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 125 GKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDL 184
GK++ +EL F EM R + T+ LL ++ +A+ +F ++ + L +
Sbjct: 434 GKLNAAKEL---FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGI 490
Query: 185 DAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWK 244
+ ++ +C V+DA +LF S + + + D+ T+NV++ G C G+ EA +++
Sbjct: 491 GIYNIIIHGMCNASKVDDAWSLFCSLSDK-GVKPDVVTYNVMIGGLCKKGSLSEADMLFR 549
Query: 245 DIMASKCRPD 254
+ C PD
Sbjct: 550 KMKEDGCTPD 559
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 120 ILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFG 179
++D+ K + E ++++EM R + T+++L+ F + + EA MF G
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380
Query: 180 LDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEA 239
+ D+ + L+ C+ K V+D LF + + + I T+N ++ G+C G + A
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI-TYNTLVLGFCQSGKLNAA 439
Query: 240 KRVWKDIMASKCRPDPRKGNWAPLL 264
K ++++ M S+ P P + LL
Sbjct: 440 KELFQE-MVSRGVP-PSVVTYGILL 462
>AT3G49240.1 | Symbols: emb1796 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:18256086-18257975 FORWARD
LENGTH=629
Length = 629
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSH-----REGLVNEDTFSTLLRRFAAAHKVEEAISMF 172
N +L+ L + +F+E ++FD + R VN TF+ ++ + A K EEA+ +F
Sbjct: 314 NYVLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVF 373
Query: 173 YTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCV 232
F D +F L+ LC + + +AE L+ + E + D T+ ++++
Sbjct: 374 RQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLY-GEMEEKNVKPDEYTYGLLMDTCFK 432
Query: 233 LGNAHEAKRVWKDIMASKCRPD 254
G E +K ++ S RP+
Sbjct: 433 EGKIDEGAAYYKTMVESNLRPN 454
>AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23987202-23988740 REVERSE
LENGTH=512
Length = 512
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 121 LDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGL 180
L +LGKM + + + +V TF +LL F +++ +A S+ + G
Sbjct: 126 LSVLGKMMK----------LGYEPSIV---TFGSLLHGFCLVNRIGDAFSLVILMVKSGY 172
Query: 181 DLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAK 240
+ ++ + TL+ LC+ + A L + ++ L D+ T+N +L G C G +A
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKK-GLGADVVTYNTLLTGLCYSGRWSDAA 231
Query: 241 RVWKDIMASKCRPD 254
R+ +D+M PD
Sbjct: 232 RMLRDMMKRSINPD 245
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 109 SYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEA 168
S P ++D+ K +E +++ EM N T+++++ ++ +A
Sbjct: 241 SINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDA 300
Query: 169 ISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILN 228
F G ++ + TL+ C+++ V++ LF + E + DI T+N +++
Sbjct: 301 KKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE-GFNADIFTYNTLIH 359
Query: 229 GWCVLGNAHEAKRVWKDIMASKCRPD 254
G+C +G A ++ +++ + PD
Sbjct: 360 GYCQVGKLRVALDIFCWMVSRRVTPD 385
>AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active 2 |
chr1:28119237-28122314 REVERSE LENGTH=862
Length = 862
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 112 PTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISM 171
P I+ GK E+ ++ M+ + + + ++ ++ F A EEA+
Sbjct: 420 PDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVA 479
Query: 172 FYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
F T + G + ++ F +LL R V+++E + S+ + + R+ T+N + +
Sbjct: 480 FNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAIL-SRLVDSGIPRNRDTFNAQIEAYK 538
Query: 232 VLGNAHEAKRVWKDIMASKCRPDPR 256
G EA + + D+ S+C PD R
Sbjct: 539 QGGKFEEAVKTYVDMEKSRCDPDER 563
>AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:42114-44303 REVERSE
LENGTH=729
Length = 729
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Query: 92 SDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDT 151
+ AL++FN +A P + + ++ + + +EM + ++ T
Sbjct: 389 GNLDKALMYFNSVKEA-GLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVT 447
Query: 152 FSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKA 211
++T+L + EA +F + L D L+ C+ ++++A LF K
Sbjct: 448 YNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ-KM 506
Query: 212 REFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDP 255
+E ++ D+ T+N +L+G+ +G+ AK +W D+++ + P P
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTP 550
>AT2G01390.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:172256-174137 FORWARD
LENGTH=577
Length = 577
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 103/254 (40%), Gaps = 7/254 (2%)
Query: 8 RRTTRILETLFPLNPNPVK--SIPPPLFTRRFLHSQPEHAAGAGAFVQNLLKFRRDKPTD 65
R + ++L +L L P K S P L + L P+ + V N+ + D
Sbjct: 18 RSSVKLLHSLPRLKPTNSKRFSQKPKLVKTQTL---PDPSVYTRDIVSNIYNILKYSNWD 74
Query: 66 QVERALDLCGFXXXXXXXXXXXRRHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILG 125
+ L G + H + A +FFNWA++ + +LDI G
Sbjct: 75 SAQEQLPHLGVRWDSHIINRVLKAH-PPMQKAWLFFNWAAQIKGFKHDHFTYTTMLDIFG 133
Query: 126 KMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLD 185
+ R + ++ VF M + L++ T+++L+ +++ V+ A+ ++ G + +
Sbjct: 134 EAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVV 193
Query: 186 AFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKD 245
++ + L VE+A ++ R ++ + T+ V++ G EA ++
Sbjct: 194 SYTAYMKMLFADGRVEEATEVYKEMLRS-RVSPNCHTYTVLMEYLVATGKCEEALDIFFK 252
Query: 246 IMASKCRPDPRKGN 259
+ +PD N
Sbjct: 253 MQEIGVQPDKAACN 266
>AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:654102-656561 FORWARD
LENGTH=819
Length = 819
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K+D AP + N ++ + S +E QVF+EM ++ T++ LL + +H+
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
+EA+ + G + + +L+ R +++A L + A E D+ T+
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA-EKGTKPDVFTYTT 389
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+L+G+ G A +++++ + C+P+
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPN 418
>AT1G77405.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29087145-29088521 FORWARD
LENGTH=458
Length = 458
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 95 KPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREG---LVNEDT 151
+ AL FF W + C ++ +L K + F+ L ++S RE +V +
Sbjct: 108 QKALEFFFWIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTAS 167
Query: 152 FSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLF-HSK 210
+ L++ V+EA++ FY +++ D+ A+ T++ LCR + + A L +
Sbjct: 168 ITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQ 227
Query: 211 AREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNW 260
F+ D T+ ++++ +C G M + CR R+ W
Sbjct: 228 LPGFRYPPDTYTYTILISSYCRYG------------MQTGCRKAIRRRMW 265
>AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:10868400-10870382 REVERSE
LENGTH=660
Length = 660
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
+++ +P+ + N ++D L K + ++ D M + + NE T++TL+ K+
Sbjct: 249 QSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKL 308
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHS-KAREFQLHRDIKTWN 224
++A+S+ + + TL+ L + + DA L S + R + L++ I ++
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHI--YS 366
Query: 225 VILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
V+++G G A EA +W+ + C+P+
Sbjct: 367 VLISGLFKEGKAEEAMSLWRKMAEKGCKPN 396
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
P N ++ L + ++ + + M + + N+ T+ TL+ + +A+
Sbjct: 289 VPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVR 348
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
+ + E+ G L+ + L+ L + E+A +L+ K E +I ++V+++G
Sbjct: 349 LLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWR-KMAEKGCKPNIVVYSVLVDGL 407
Query: 231 CVLGNAHEAKRVWKDIMASKCRPD 254
C G +EAK + ++AS C P+
Sbjct: 408 CREGKPNEAKEILNRMIASGCLPN 431
>AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:23227574-23229031 FORWARD
LENGTH=485
Length = 485
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N +++ L + SRF V +M + T S+L+ F ++V +AI + E+
Sbjct: 108 NIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEE 167
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
G D+ + T++ C+ V DA LF R+ + D T+N ++ G C G
Sbjct: 168 MGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERD-GVRADAVTYNSLVAGLCCSGRWS 226
Query: 238 EAKRVWKDIMASKCRPD 254
+A R+ +D++ P+
Sbjct: 227 DAARLMRDMVMRDIVPN 243
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 120 ILDILGKMSRFEELHQVFDEMSHREGLVNED--TFSTLLRRFAAAHKVEEAISMFYTREQ 177
++D+ K +F E ++++EM+ R V+ D T+++L+ +V+EA M
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRR--CVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVT 307
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
G D+ + TL+ C+ K V++ LF A+ L D T+N I+ G+ G
Sbjct: 308 KGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR-GLVGDTITYNTIIQGYFQAGRPD 366
Query: 238 EAKRVW 243
A+ ++
Sbjct: 367 AAQEIF 372
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N I+ + R + ++F M R N T+S LL +VE+A+ +F ++
Sbjct: 353 NTIIQGYFQAGRPDAAQEIFSRMDSRP---NIRTYSILLYGLCMNWRVEKALVLFENMQK 409
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWC 231
++LD+ + ++ +C+ +VEDA LF S + + L D+ ++ +++G+C
Sbjct: 410 SEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK-GLKPDVVSYTTMISGFC 462
>AT5G60960.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24528423-24529988 REVERSE
LENGTH=521
Length = 521
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 6/153 (3%)
Query: 95 KPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFST 154
+ AL F W +++ T + +D G+ F+ + ++ +S +G+ T +
Sbjct: 124 RAALGFNEWLDSNSNFSHTDETVSFFVDYFGRRKDFKGMLEI---ISKYKGIAGGKTLES 180
Query: 155 LLRRFAAAHKVEEAISMFYTREQ-FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKARE 213
+ R A + ++ F E +GL D ++ ++ LC H AE + + A E
Sbjct: 181 AIDRLVRAGRPKQVTDFFEKMENDYGLKRDKESLTLVVKKLCEKGHASIAEKMVKNTANE 240
Query: 214 FQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDI 246
+ D +++++GWC+ EA R+ ++
Sbjct: 241 --IFPDENICDLLISGWCIAEKLDEATRLAGEM 271
>AT1G13630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4669784-4672826 REVERSE
LENGTH=806
Length = 806
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 4/175 (2%)
Query: 97 ALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLL 156
AL FN KAD +P + ++ L K+ +F+ ++DEM + L N T LL
Sbjct: 382 ALSLFNQM-KADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALL 440
Query: 157 RRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQL 216
+ EA S+ + G LD+ + ++ + +E+A LF E +
Sbjct: 441 LGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKV-VIETGI 499
Query: 217 HRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCG 271
+ T+N ++ G+C N EA+++ I P ++ L+ +A CG
Sbjct: 500 TPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVV--SYTTLMDAYANCG 552
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 105 SKADSYAPTSRVCNEILDILGKMSR---FEELHQVFDEMSHREGLVNEDTFSTLLRRFAA 161
++A + P N +LD + R F E VF EM + N T++ L+R F
Sbjct: 160 AQAHGFMPGVLSYNAVLDATIRSKRNISFAE--NVFKEMLESQVSPNVFTYNILIRGFCF 217
Query: 162 AHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIK 221
A ++ A+++F E G ++ + TL+ C+ + ++D L S A + L ++
Sbjct: 218 AGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK-GLEPNLI 276
Query: 222 TWNVILNGWCVLGNAHEAKRVWKDI 246
++NV++NG C G E V ++
Sbjct: 277 SYNVVINGLCREGRMKEVSFVLTEM 301
>AT1G13630.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4670178-4672826 REVERSE
LENGTH=798
Length = 798
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 4/175 (2%)
Query: 97 ALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLL 156
AL FN KAD +P + ++ L K+ +F+ ++DEM + L N T LL
Sbjct: 382 ALSLFNQM-KADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALL 440
Query: 157 RRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQL 216
+ EA S+ + G LD+ + ++ + +E+A LF E +
Sbjct: 441 LGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKV-VIETGI 499
Query: 217 HRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCG 271
+ T+N ++ G+C N EA+++ I P ++ L+ +A CG
Sbjct: 500 TPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVV--SYTTLMDAYANCG 552
>AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4294883-4296748 REVERSE
LENGTH=621
Length = 621
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N ++ ++ + E ++F EM R + ++ LL + E+A+ +F E+
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEK 485
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
++LD+ + ++ +C V+DA LF S + + D+KT+N+++ G C G+
Sbjct: 486 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPDVKTYNIMIGGLCKKGSLS 544
Query: 238 EAKRVWK 244
EA +++
Sbjct: 545 EADLLFR 551
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 111 APTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAIS 170
+P + ++D K ++ ++ + + D M + N TF+ L+ + A+ +++ +
Sbjct: 349 SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLE 408
Query: 171 MFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGW 230
+F G+ D + TL+ C +E A+ LF ++ DI ++ ++L+G
Sbjct: 409 LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR-RVRPDIVSYKILLDGL 467
Query: 231 CVLGNAHEAKRVWKDIMASKCRPD 254
C G +A +++ I SK D
Sbjct: 468 CDNGEPEKALEIFEKIEKSKMELD 491
>AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 |
chr4:15403020-15406358 FORWARD LENGTH=1112
Length = 1112
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K AP CN L L K R E Q+F + + + T++ +++ ++ ++
Sbjct: 460 KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEI 519
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
+EAI + + G + D+ +L+ L + V++A +F + +E +L + T+N
Sbjct: 520 DEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMF-MRMKEMKLKPTVVTYNT 578
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+L G G EA +++ ++ C P+
Sbjct: 579 LLAGLGKNGKIQEAIELFEGMVQKGCPPN 607
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 99 VFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRR 158
++++ S D ++PT+ ++D L K R E Q+F+ M N ++ L+
Sbjct: 877 LYYDLMSDRD-FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILING 935
Query: 159 FAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHR 218
F A + + A ++F + G+ DL + L+ LC V++ F + +E L+
Sbjct: 936 FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYF-KELKESGLNP 994
Query: 219 DIKTWNVILNGWCVLGNAH 237
D+ +N+I+NG LG +H
Sbjct: 995 DVVCYNLIING---LGKSH 1010
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 106 KADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKV 165
K+ P N +LD GK + +EL +++ EMS E N T + ++ A V
Sbjct: 812 KSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNV 871
Query: 166 EEAISMFYTREQFGLDLDLD----AFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIK 221
++A+ ++Y D D + L+ L + + +A+ LF ++ +
Sbjct: 872 DDALDLYY---DLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGML-DYGCRPNCA 927
Query: 222 TWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGCG 271
+N+++NG+ G A A ++K ++ RPD + ++ L+ C G
Sbjct: 928 IYNILINGFGKAGEADAACALFKRMVKEGVRPDLK--TYSVLVDCLCMVG 975
>AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2766367-2768430 REVERSE
LENGTH=687
Length = 687
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 93 DWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTF 152
D K A+ ++ + S P + N ++ L K R ++ ++++ M E + T+
Sbjct: 234 DHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTY 293
Query: 153 STLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAR 212
S+L+ A V++A S+F ++ +D+ + T+L CR ++++ L+ +
Sbjct: 294 SSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELW--RIM 351
Query: 213 EFQLHRDIKTWNVILNGWCVLGNAHEAKRVWK 244
E + +I ++N+++ G G EA +W+
Sbjct: 352 EHKNSVNIVSYNILIKGLLENGKIDEATMIWR 383
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE LENGTH=634
Length = 634
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 129 RFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
R ++ Q+F+ M ++ + T++TL++ F + +VE+ +F GL D +
Sbjct: 380 RLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYT 439
Query: 189 TLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMA 248
TL+ L ++A+ +F + + DI T++++L+G C G +A V+ +
Sbjct: 440 TLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498
Query: 249 SKCRPD 254
S+ + D
Sbjct: 499 SEIKLD 504
>AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:2134060-2136249 REVERSE
LENGTH=729
Length = 729
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 33/178 (18%)
Query: 107 ADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHRE---------------------G 145
+ ++ + + ++++ K +VF+EM R+
Sbjct: 74 VNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACS 133
Query: 146 LVNEDTFS-------TLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYK 198
LVNE F TLL + ++ + + +G D D+ ++L C+
Sbjct: 134 LVNEMRFQGIKPGPVTLLEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCD 193
Query: 199 HVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPR 256
HV DA+ LF + RD+ +WN +++G+ +GN E ++ + RPD +
Sbjct: 194 HVGDAKDLFDQMEQ-----RDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQ 246
>AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:10304850-10307465 FORWARD
LENGTH=871
Length = 871
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 110 YAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAI 169
++ R CN +LD+ K + VF EMS R + ++++++ +A EA+
Sbjct: 327 FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVV----SYTSMIAGYAREGLAGEAV 382
Query: 170 SMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNG 229
+F E+ G+ D+ +L RY+ +++ + + H +E L DI N +++
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV-HEWIKENDLGFDIFVSNALMDM 441
Query: 230 WCVLGNAHEAKRVWKDI 246
+ G+ EA+ V+ ++
Sbjct: 442 YAKCGSMQEAELVFSEM 458
>AT3G06430.1 | Symbols: EMB2750 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr3:1956658-1958240
REVERSE LENGTH=486
Length = 486
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
Query: 91 RSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLV-NE 149
+ W AL F+ + Y P ++L +LGK + ++FDEM EGL
Sbjct: 101 KKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLE-EGLEPTV 159
Query: 150 DTFSTLLRRFAAAHKVEEAISMFYTREQF-GLDLDLDAFRTLLMWLCRYKHVEDAETLFH 208
+ ++ LL + ++ +++A S+ + F D+ + TLL + ++L+
Sbjct: 160 ELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYK 219
Query: 209 SKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASK-CRPDPRKGNWAPLLSCF 267
+ E + + T N++L+G+ +G + ++V D++ S C+PD N +LS F
Sbjct: 220 -EMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNI--ILSVF 276
Query: 268 AGCG 271
G
Sbjct: 277 GNMG 280
>AT3G07290.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2321740-2324382 REVERSE
LENGTH=880
Length = 880
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Query: 95 KPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFST 154
+ AL F+ SK + AP S + ++ L ++ R EE + D+M + + T++
Sbjct: 247 RDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTV 306
Query: 155 LLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREF 214
L++ +++A ++F G ++ + L+ LCR +E+A + ++
Sbjct: 307 LIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD- 365
Query: 215 QLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDPRKGN 259
++ + T+N ++NG+C G A + + C+P+ R N
Sbjct: 366 RIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFN 410
>AT1G06710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2056999-2060242 REVERSE
LENGTH=997
Length = 997
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 107 ADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNED-TFSTLLRRFAAAHKV 165
+ P + +++L+ L S+ E +F+EM R GLV + T++ ++ F A +
Sbjct: 476 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMK-RGGLVADVYTYTIMVDSFCKAGLI 534
Query: 166 EEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNV 225
E+A F + G ++ + L+ + K V A LF + E L +I T++
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLP-NIVTYSA 593
Query: 226 ILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+++G C G +A ++++ + SK PD
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPD 622
>AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:5461031-5462545 FORWARD
LENGTH=504
Length = 504
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Query: 94 WKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFS 153
W A + +K + Y P N ++D K R E + ++EM R + T+S
Sbjct: 237 WSDATRMVSCMTKREIY-PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYS 295
Query: 154 TLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKARE 213
L+ +++EA MF G D+ + L+ C+ K VE LF ++
Sbjct: 296 LLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQR 355
Query: 214 FQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
+ R+ T+ +++ G+C G + A+ +++ ++ P+
Sbjct: 356 -GVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPN 395
>AT1G19720.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:6819926-6822610 REVERSE
LENGTH=894
Length = 894
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 116 VCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTR 175
V N ++D+ K + E+ +VFD + +++ T+++++ + A +A +F
Sbjct: 389 VGNSLVDMYSKCGKLEDARKVFDSVKNKDVY----TWNSMITGYCQAGYCGKAYELFTRM 444
Query: 176 EQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGN 235
+ L ++ + T++ + +A LF ++ ++ R+ TWN+I+ G+ G
Sbjct: 445 QDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGK 504
Query: 236 AHEAKRVWKDIMASKCRPDPRKGNWAPLLSCFAGC 270
EA +++ + S+ P N +LS C
Sbjct: 505 KDEALELFRKMQFSRFMP-----NSVTILSLLPAC 534
>AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain
protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659
Length = 659
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 123 ILGKMSRFEELHQVFD---EMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFG 179
I+ + R +E+ FD EM NE T++ L+R + + ++ +F ++ G
Sbjct: 501 IINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENG 560
Query: 180 LDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEA 239
L DL A+ + C+ + V+ AE L + R L D T++ ++ G EA
Sbjct: 561 LSPDLYAYNATIQSFCKMRKVKKAEELLKTMLR-IGLKPDNFTYSTLIKALSESGRESEA 619
Query: 240 KRVWKDIMASKCRPD 254
+ ++ I C PD
Sbjct: 620 REMFSSIERHGCVPD 634
>AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:26201012-26203759 REVERSE
LENGTH=915
Length = 915
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 129 RFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
R +E +F +M E T++ L++ + + EA+++ E+ G+ ++ +
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362
Query: 189 TLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMA 248
L+ LC E A L + E L ++ T+N ++NG+C G +A V + + +
Sbjct: 363 VLIDSLCSQCKFEKARELL-GQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES 421
Query: 249 SKCRPDPRKGNWAPLLSCFAGCGMRVAIANPML 281
K P+ R N C + + + N ML
Sbjct: 422 RKLSPNTRTYNELIKGYCKSNVHKAMGVLNKML 454
>AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1685 (InterPro:IPR012881),
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: Tetratricopeptide
repeat (TPR)-like superfamily protein
(TAIR:AT2G29760.1); Has 49784 Blast hits to 14716
proteins in 280 species: Archae - 2; Bacteria - 10;
Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0;
Other Eukaryotes - 904 (source: NCBI BLink). |
chr3:8021347-8024534 REVERSE LENGTH=938
Length = 938
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAH--KVEEAISMFYTR 175
N I+ L + S FEE +VF M +EG VN D + + A H ++ A ++Y
Sbjct: 438 NTIISGLVQGSLFEEAIEVFCSMQSQEG-VNADGVTMMSIASACGHLGALDLAKWIYYYI 496
Query: 176 EQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGN 235
E+ G+ LD+ TL+ R E A ++F+S +RD+ W + + GN
Sbjct: 497 EKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-----NRDVSAWTAAIGAMAMAGN 551
Query: 236 AHEAKRVWKDIMASKCRPD 254
A A ++ D++ +PD
Sbjct: 552 AERAIELFDDMIEQGLKPD 570
>AT3G22690.2 | Symbols: | INVOLVED IN: photosystem II assembly,
regulation of chlorophyll biosynthetic process,
photosystem I assembly, thylakoid membrane organization,
RNA modification; LOCATED IN: chloroplast; EXPRESSED IN:
13 plant structures; EXPRESSED DURING: LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage, E expanded cotyledon stage, D bilateral stage;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Tetratricopeptide repeat (TPR)-like
superfamily protein (TAIR:AT2G29760.1). |
chr3:8022006-8024534 REVERSE LENGTH=842
Length = 842
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAH--KVEEAISMFYTR 175
N I+ L + S FEE +VF M +EG VN D + + A H ++ A ++Y
Sbjct: 438 NTIISGLVQGSLFEEAIEVFCSMQSQEG-VNADGVTMMSIASACGHLGALDLAKWIYYYI 496
Query: 176 EQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGN 235
E+ G+ LD+ TL+ R E A ++F+S +RD+ W + + GN
Sbjct: 497 EKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-----NRDVSAWTAAIGAMAMAGN 551
Query: 236 AHEAKRVWKDIMASKCRPD 254
A A ++ D++ +PD
Sbjct: 552 AERAIELFDDMIEQGLKPD 570
>AT3G54980.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:20370293-20372848 FORWARD
LENGTH=851
Length = 851
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 118 NEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQ 177
N I+D K + ++EM N T+++L+ +++++A+ M +
Sbjct: 588 NSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKN 647
Query: 178 FGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVLGNAH 237
G+ LD+ A+ L+ C+ ++E A LF S+ E L+ +N +++G+ LGN
Sbjct: 648 KGVKLDIPAYGALIDGFCKRSNMESASALF-SELLEEGLNPSQPIYNSLISGFRNLGNMV 706
Query: 238 EAKRVWKDIMASKCRPD 254
A ++K ++ R D
Sbjct: 707 AALDLYKKMLKDGLRCD 723
>AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29900617-29903127 FORWARD
LENGTH=836
Length = 836
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Query: 97 ALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEM---SHREGLVNEDTFS 153
AL F WA K Y P+ + D L + F + +F+EM S G ++ + ++
Sbjct: 188 ALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYN 247
Query: 154 TLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKARE 213
+++ A A K+E A F ++ G +D + L+M A ++ S +
Sbjct: 248 QVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKT 307
Query: 214 FQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPD 254
L D T+ +I+ G A ++++ + K RP
Sbjct: 308 DSL-LDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPS 347