Miyakogusa Predicted Gene

Lj6g3v1690560.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1690560.2 Non Chatacterized Hit- tr|I3KGM3|I3KGM3_ORENI
Uncharacterized protein (Fragment) OS=Oreochromis
nilo,33.89,4e-17,LRR_4,Leucine rich repeat 4; LRR,Leucine-rich repeat;
no description,NULL; SUBFAMILY NOT NAMED,NULL;,CUFF.59764.2
         (189 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71440.1 | Symbols: PFI, TFC E | tubulin folding cofactor E /...   224   3e-59

>AT1G71440.1 | Symbols: PFI, TFC E | tubulin folding cofactor E /
           Pfifferling (PFI) | chr1:26921271-26924373 REVERSE
           LENGTH=531
          Length = 531

 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/182 (65%), Positives = 142/182 (78%), Gaps = 2/182 (1%)

Query: 8   LPLLKSIRVLVLNNTGVDWEQVELLRQPLMAIEELHIRGNNISRILPMTSSMVQGFDSLR 67
           LP LK+IRVLVLNN+G+ W QVE+LR+ L  IEELH+ GN IS I   +SS  Q F+SLR
Sbjct: 205 LPQLKNIRVLVLNNSGLSWTQVEILRRSLPGIEELHLMGNMISTITSTSSSDDQAFNSLR 264

Query: 68  LLNLEDNCIAEWKEIMKLSQLRCLEQLYLNKNCLSSLFYPDNYSLYESEVKCCKPFQNLR 127
           LLNL+DNCI++W E++KLSQL CLEQLYLNKN LS +F   N +  ES  K   PF +L 
Sbjct: 265 LLNLDDNCISDWSEVLKLSQLPCLEQLYLNKNKLSRIFQSVNGT--ESSEKGSDPFPSLS 322

Query: 128 CLLLGDNNISDLASVDSLNSFPNLVDIRLSGNPITDSTRGGIPRFVLIARLAKIQILNGS 187
           CLLLG NNI DLASVD+LN FP LVDIRLS NPI+D  RGG+PRFVL+ARL K+Q+LNGS
Sbjct: 323 CLLLGANNIGDLASVDALNGFPQLVDIRLSENPISDPVRGGVPRFVLVARLTKVQVLNGS 382

Query: 188 EV 189
           EV
Sbjct: 383 EV 384