Miyakogusa Predicted Gene

Lj6g3v1690540.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1690540.2 tr|E5GCA9|E5GCA9_CUCME Protein SEY1 OS=Cucumis
melo subsp. melo PE=4 SV=1,58.23,9e-16,RHD3,Root hair defective 3
GTP-binding; no description,NULL; P-loop containing nucleoside
triphospha,CUFF.59765.2
         (342 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding ...   573   e-164
AT5G45160.1 | Symbols:  | Root hair defective 3 GTP-binding prot...   563   e-161
AT1G72960.1 | Symbols:  | Root hair defective 3 GTP-binding prot...   553   e-158
AT3G13870.2 | Symbols: RHD3 | Root hair defective 3 GTP-binding ...   465   e-131

>AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding
           protein (RHD3) | chr3:4565762-4571109 REVERSE LENGTH=802
          Length = 802

 Score =  573 bits (1476), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/336 (81%), Positives = 303/336 (90%)

Query: 6   DDCHATQLIDGDGTFNVAGLDTFIKTSSLAACGLSYAVVAIMGPQSSGKSTLMNHLFHTS 65
           D   +TQLIDGDG FNV+G+D FIK   L  CGLSYAVV+IMGPQSSGKSTL+NHLF T+
Sbjct: 2   DAACSTQLIDGDGVFNVSGVDHFIKEVKLDECGLSYAVVSIMGPQSSGKSTLLNHLFGTN 61

Query: 66  FREMDAFRGRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSALFALAV 125
           FREMDAFRGRSQTTKGIWIA+C GIEPCTV MDLEGTDGRERGEDDTAFEKQSALFALAV
Sbjct: 62  FREMDAFRGRSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

Query: 126 SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPMENLEPI 185
           SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL+FVIRDK++TP+ENLEP+
Sbjct: 122 SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 181

Query: 186 LREDIQKIWDAVSKPQAHKNTPLSEFFNVEVTGLSSYEDKEDKFKEEVAQLRQRFFHSVA 245
           LREDIQKIWD+V KPQAHK TPLS+FFNVEV  LSSYE+KE++FKE+V  LRQRFF SVA
Sbjct: 182 LREDIQKIWDSVPKPQAHKETPLSDFFNVEVVALSSYEEKEEQFKEQVYNLRQRFFQSVA 241

Query: 246 PGGLAGDRRGVVPASAFSISAQQIWNVIRENKDLDLPAHKVMVATVRCEEIANEKFSHLR 305
           PGGLAGDRRGVVPA+AF+ SA+Q+W VI++NKDLDLPAHKVMVATVRCEEIANEKFS   
Sbjct: 242 PGGLAGDRRGVVPANAFAFSAKQMWQVIKDNKDLDLPAHKVMVATVRCEEIANEKFSSFI 301

Query: 306 TDEGWLELEEAVESGPVRGFGEKLSSIIDTYLSQYD 341
            +E W ELEEAV+SGPV GFG KLSSI+   LS+YD
Sbjct: 302 ANENWRELEEAVQSGPVSGFGRKLSSILQASLSEYD 337


>AT5G45160.1 | Symbols:  | Root hair defective 3 GTP-binding protein
           (RHD3) | chr5:18264991-18270035 FORWARD LENGTH=834
          Length = 834

 Score =  563 bits (1450), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/341 (79%), Positives = 303/341 (88%), Gaps = 1/341 (0%)

Query: 1   MARIDDDCHATQLIDGDGTFNVAGLDTFIKTSSLAACGLSYAVVAIMGPQSSGKSTLMNH 60
           M   DD C +TQLIDG+G FNV GLD F+K + L+ CGLSYAVVAIMGPQSSGKSTL+NH
Sbjct: 1   MGENDDGC-STQLIDGNGEFNVKGLDNFVKKTKLSDCGLSYAVVAIMGPQSSGKSTLLNH 59

Query: 61  LFHTSFREMDAFRGRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSAL 120
           LF TSFREMDAF GRSQTTKGIW+A+CVGIEP T+AMDLEGTDGRERGEDDT FEKQSAL
Sbjct: 60  LFKTSFREMDAFAGRSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSAL 119

Query: 121 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPME 180
           FA+AV+DIVLINMWCHDIGREQAANKPLLKTVFQVM+RLFSPRKTTLLFVIRDK+KTP+E
Sbjct: 120 FAIAVADIVLINMWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIE 179

Query: 181 NLEPILREDIQKIWDAVSKPQAHKNTPLSEFFNVEVTGLSSYEDKEDKFKEEVAQLRQRF 240
            LE  LREDIQKIWD+V KP+AHKNTPL+EFFNV +  LSSYE+KE +F++EVA+LRQRF
Sbjct: 180 LLERALREDIQKIWDSVRKPEAHKNTPLNEFFNVMIVALSSYEEKEKQFEQEVAELRQRF 239

Query: 241 FHSVAPGGLAGDRRGVVPASAFSISAQQIWNVIRENKDLDLPAHKVMVATVRCEEIANEK 300
           FHS++PGGLAGDRRGVVPAS FS S+QQIW VI+EN+DLDLPAHKVMVATVRCEEIANEK
Sbjct: 240 FHSISPGGLAGDRRGVVPASGFSFSSQQIWKVIKENRDLDLPAHKVMVATVRCEEIANEK 299

Query: 301 FSHLRTDEGWLELEEAVESGPVRGFGEKLSSIIDTYLSQYD 341
              L T+E WLEL EA E G V GFG+KLSSI++ Y S+YD
Sbjct: 300 LRDLATNESWLELHEAAEGGLVPGFGKKLSSILEKYFSEYD 340


>AT1G72960.1 | Symbols:  | Root hair defective 3 GTP-binding protein
           (RHD3) | chr1:27446263-27450862 FORWARD LENGTH=795
          Length = 795

 Score =  553 bits (1425), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 260/334 (77%), Positives = 302/334 (90%)

Query: 8   CHATQLIDGDGTFNVAGLDTFIKTSSLAACGLSYAVVAIMGPQSSGKSTLMNHLFHTSFR 67
           C + QLIDGDG +NV+ +D FIK   LA CGLSYAVV+IMGPQSSGKSTL+NHLF T+F 
Sbjct: 9   CCSVQLIDGDGIYNVSRIDHFIKDVKLADCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFM 68

Query: 68  EMDAFRGRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSALFALAVSD 127
           EMDAF+GRSQTTKGIW+A+C GIEPCT+ MDLEGTDGRERGEDDTAFEKQSALFALA+SD
Sbjct: 69  EMDAFKGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISD 128

Query: 128 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPMENLEPILR 187
           IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT+LFVIRDK++TP+ENLEP+LR
Sbjct: 129 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLR 188

Query: 188 EDIQKIWDAVSKPQAHKNTPLSEFFNVEVTGLSSYEDKEDKFKEEVAQLRQRFFHSVAPG 247
           EDIQKIWD+V KP+AHK TPLS+FFNVEV  LSSYE+KE++FKE++A LRQRF HS+APG
Sbjct: 189 EDIQKIWDSVPKPEAHKETPLSDFFNVEVVALSSYEEKEEQFKEQIASLRQRFMHSIAPG 248

Query: 248 GLAGDRRGVVPASAFSISAQQIWNVIRENKDLDLPAHKVMVATVRCEEIANEKFSHLRTD 307
           GLAGDRRGV+PAS F+ SA QIW VI+ENKDLDLPAHKVMVATVRCEEIANEKF+H  T+
Sbjct: 249 GLAGDRRGVIPASGFAFSADQIWRVIKENKDLDLPAHKVMVATVRCEEIANEKFAHFITN 308

Query: 308 EGWLELEEAVESGPVRGFGEKLSSIIDTYLSQYD 341
           E W +L+E V++GPV  FG++L++I+ + LS+YD
Sbjct: 309 EDWRKLDEEVQAGPVSNFGKRLTTILGSCLSEYD 342


>AT3G13870.2 | Symbols: RHD3 | Root hair defective 3 GTP-binding
           protein (RHD3) | chr3:4565762-4570261 REVERSE LENGTH=738
          Length = 738

 Score =  465 bits (1196), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/268 (83%), Positives = 245/268 (91%)

Query: 74  GRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINM 133
           G SQTTKGIWIA+C GIEPCTV MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINM
Sbjct: 6   GMSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINM 65

Query: 134 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPMENLEPILREDIQKI 193
           WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL+FVIRDK++TP+ENLEP+LREDIQKI
Sbjct: 66  WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 125

Query: 194 WDAVSKPQAHKNTPLSEFFNVEVTGLSSYEDKEDKFKEEVAQLRQRFFHSVAPGGLAGDR 253
           WD+V KPQAHK TPLS+FFNVEV  LSSYE+KE++FKE+V  LRQRFF SVAPGGLAGDR
Sbjct: 126 WDSVPKPQAHKETPLSDFFNVEVVALSSYEEKEEQFKEQVYNLRQRFFQSVAPGGLAGDR 185

Query: 254 RGVVPASAFSISAQQIWNVIRENKDLDLPAHKVMVATVRCEEIANEKFSHLRTDEGWLEL 313
           RGVVPA+AF+ SA+Q+W VI++NKDLDLPAHKVMVATVRCEEIANEKFS    +E W EL
Sbjct: 186 RGVVPANAFAFSAKQMWQVIKDNKDLDLPAHKVMVATVRCEEIANEKFSSFIANENWREL 245

Query: 314 EEAVESGPVRGFGEKLSSIIDTYLSQYD 341
           EEAV+SGPV GFG KLSSI+   LS+YD
Sbjct: 246 EEAVQSGPVSGFGRKLSSILQASLSEYD 273