Miyakogusa Predicted Gene

Lj6g3v1690540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1690540.1 CUFF.59765.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding ...   278   1e-75
AT5G45160.1 | Symbols:  | Root hair defective 3 GTP-binding prot...   277   2e-75
AT1G72960.1 | Symbols:  | Root hair defective 3 GTP-binding prot...   267   3e-72
AT3G13870.2 | Symbols: RHD3 | Root hair defective 3 GTP-binding ...   171   2e-43

>AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding
           protein (RHD3) | chr3:4565762-4571109 REVERSE LENGTH=802
          Length = 802

 Score =  278 bits (712), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 130/154 (84%), Positives = 139/154 (90%)

Query: 6   DDCHATQLIDGDGTFNVAGLDTFIKTSSLAACGLSYAVVAIMGPQSSGKSTLMNHLFHTS 65
           D   +TQLIDGDG FNV+G+D FIK   L  CGLSYAVV+IMGPQSSGKSTL+NHLF T+
Sbjct: 2   DAACSTQLIDGDGVFNVSGVDHFIKEVKLDECGLSYAVVSIMGPQSSGKSTLLNHLFGTN 61

Query: 66  FREMDAFRGRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSALFALAV 125
           FREMDAFRGRSQTTKGIWIA+C GIEPCTV MDLEGTDGRERGEDDTAFEKQSALFALAV
Sbjct: 62  FREMDAFRGRSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

Query: 126 SDIVLINMWCHDIGREQAANKPLLKTVFQVVCSM 159
           SDIVLINMWCHDIGREQAANKPLLKTVFQV+  +
Sbjct: 122 SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL 155


>AT5G45160.1 | Symbols:  | Root hair defective 3 GTP-binding protein
           (RHD3) | chr5:18264991-18270035 FORWARD LENGTH=834
          Length = 834

 Score =  277 bits (709), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 129/159 (81%), Positives = 142/159 (89%), Gaps = 1/159 (0%)

Query: 1   MARIDDDCHATQLIDGDGTFNVAGLDTFIKTSSLAACGLSYAVVAIMGPQSSGKSTLMNH 60
           M   DD C +TQLIDG+G FNV GLD F+K + L+ CGLSYAVVAIMGPQSSGKSTL+NH
Sbjct: 1   MGENDDGC-STQLIDGNGEFNVKGLDNFVKKTKLSDCGLSYAVVAIMGPQSSGKSTLLNH 59

Query: 61  LFHTSFREMDAFRGRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSAL 120
           LF TSFREMDAF GRSQTTKGIW+A+CVGIEP T+AMDLEGTDGRERGEDDT FEKQSAL
Sbjct: 60  LFKTSFREMDAFAGRSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSAL 119

Query: 121 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVVCSM 159
           FA+AV+DIVLINMWCHDIGREQAANKPLLKTVFQV+  +
Sbjct: 120 FAIAVADIVLINMWCHDIGREQAANKPLLKTVFQVMLRL 158


>AT1G72960.1 | Symbols:  | Root hair defective 3 GTP-binding protein
           (RHD3) | chr1:27446263-27450862 FORWARD LENGTH=795
          Length = 795

 Score =  267 bits (682), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 123/152 (80%), Positives = 137/152 (90%)

Query: 8   CHATQLIDGDGTFNVAGLDTFIKTSSLAACGLSYAVVAIMGPQSSGKSTLMNHLFHTSFR 67
           C + QLIDGDG +NV+ +D FIK   LA CGLSYAVV+IMGPQSSGKSTL+NHLF T+F 
Sbjct: 9   CCSVQLIDGDGIYNVSRIDHFIKDVKLADCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFM 68

Query: 68  EMDAFRGRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSALFALAVSD 127
           EMDAF+GRSQTTKGIW+A+C GIEPCT+ MDLEGTDGRERGEDDTAFEKQSALFALA+SD
Sbjct: 69  EMDAFKGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISD 128

Query: 128 IVLINMWCHDIGREQAANKPLLKTVFQVVCSM 159
           IVLINMWCHDIGREQAANKPLLKTVFQV+  +
Sbjct: 129 IVLINMWCHDIGREQAANKPLLKTVFQVMMRL 160


>AT3G13870.2 | Symbols: RHD3 | Root hair defective 3 GTP-binding
           protein (RHD3) | chr3:4565762-4570261 REVERSE LENGTH=738
          Length = 738

 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 81/86 (94%)

Query: 74  GRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINM 133
           G SQTTKGIWIA+C GIEPCTV MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINM
Sbjct: 6   GMSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINM 65

Query: 134 WCHDIGREQAANKPLLKTVFQVVCSM 159
           WCHDIGREQAANKPLLKTVFQV+  +
Sbjct: 66  WCHDIGREQAANKPLLKTVFQVMMRL 91