Miyakogusa Predicted Gene

Lj6g3v1689490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1689490.1 Non Chatacterized Hit- tr|I3SN70|I3SN70_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2 SV,84.89,0,Subunit
III of photosystem I reaction centre, PsaF,Photosystem I PsaF,
reaction centre subunit III; ,CUFF.59784.1
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31330.1 | Symbols: PSAF | photosystem I subunit F | chr1:112...   285   2e-77

>AT1G31330.1 | Symbols: PSAF | photosystem I subunit F |
           chr1:11215011-11215939 REVERSE LENGTH=221
          Length = 221

 Score =  285 bits (729), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 131/154 (85%), Positives = 143/154 (92%)

Query: 72  DISGLTPCKESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKASVEKTKRRFDNYAKQG 131
           DISGLTPCK+SKQFAKREKQ IKKLESSLKLYAP+SAPALA+ A +EKTKRRFDNY K G
Sbjct: 68  DISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYG 127

Query: 132 LLCGADGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAIRDEKKPTQKEII 191
           LLCG+DGLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEII
Sbjct: 128 LLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEII 187

Query: 192 IDVPLASSLVFRGFSWPIAAYREFLNGELVAKDV 225
           IDVPLAS ++FRGF WP+AAYREFLNG+L+AKDV
Sbjct: 188 IDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221