Miyakogusa Predicted Gene
- Lj6g3v1629810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1629810.1 Non Chatacterized Hit- tr|K4A512|K4A512_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si033906,32.02,5e-19,HELICASE-RELATED,NULL; dsRNA_bind,Dicer
double-stranded RNA-binding fold; DICER_DSRBF,Dicer
double-s,NODE_66160_length_585_cov_47.982906.path1.1
(184 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525 ... 150 4e-37
AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 ... 150 4e-37
AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 | chr3:768020... 150 4e-37
>AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525
REVERSE LENGTH=1374
Length = 1374
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 111/184 (60%)
Query: 1 MLKNIACLEACKQLHKIGALTDKLVPDIXXXXXXXXXFGSEPYDEKQPSYVPRELVNQVL 60
+LK CL+AC QLHK+GAL+D LVPD+ Y+ +QP Y P ELV+Q
Sbjct: 598 VLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQPCYFPPELVSQFS 657
Query: 61 KHGETTYHCYLIELKQNFSYDITVQNIYLATRVELNREIASMQFDMGFDKGSLSVSFIHK 120
ETTYH YLI +K N + + ++ L TRV L +I + F + +G+++V+ +
Sbjct: 658 AQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYV 717
Query: 121 GAIHLSPDMVSLCKRFQVTILRILLDHNMDRLQTALEKCCLEDGLEIDYLLLPSMVNEQG 180
GA HL+ + V C+RFQ+T+ R+LLDH+++ L AL L DG+ +DYLL+PS + +
Sbjct: 718 GAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRDGVALDYLLVPSTHSHET 777
Query: 181 PTID 184
ID
Sbjct: 778 SLID 781
>AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833
REVERSE LENGTH=1388
Length = 1388
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 111/184 (60%)
Query: 1 MLKNIACLEACKQLHKIGALTDKLVPDIXXXXXXXXXFGSEPYDEKQPSYVPRELVNQVL 60
+LK CL+AC QLHK+GAL+D LVPD+ Y+ +QP Y P ELV+Q
Sbjct: 612 VLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQPCYFPPELVSQFS 671
Query: 61 KHGETTYHCYLIELKQNFSYDITVQNIYLATRVELNREIASMQFDMGFDKGSLSVSFIHK 120
ETTYH YLI +K N + + ++ L TRV L +I + F + +G+++V+ +
Sbjct: 672 AQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYV 731
Query: 121 GAIHLSPDMVSLCKRFQVTILRILLDHNMDRLQTALEKCCLEDGLEIDYLLLPSMVNEQG 180
GA HL+ + V C+RFQ+T+ R+LLDH+++ L AL L DG+ +DYLL+PS + +
Sbjct: 732 GAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRDGVALDYLLVPSTHSHET 791
Query: 181 PTID 184
ID
Sbjct: 792 SLID 795
>AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 |
chr3:768020-774833 REVERSE LENGTH=1388
Length = 1388
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 111/184 (60%)
Query: 1 MLKNIACLEACKQLHKIGALTDKLVPDIXXXXXXXXXFGSEPYDEKQPSYVPRELVNQVL 60
+LK CL+AC QLHK+GAL+D LVPD+ Y+ +QP Y P ELV+Q
Sbjct: 612 VLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQPCYFPPELVSQFS 671
Query: 61 KHGETTYHCYLIELKQNFSYDITVQNIYLATRVELNREIASMQFDMGFDKGSLSVSFIHK 120
ETTYH YLI +K N + + ++ L TRV L +I + F + +G+++V+ +
Sbjct: 672 AQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYV 731
Query: 121 GAIHLSPDMVSLCKRFQVTILRILLDHNMDRLQTALEKCCLEDGLEIDYLLLPSMVNEQG 180
GA HL+ + V C+RFQ+T+ R+LLDH+++ L AL L DG+ +DYLL+PS + +
Sbjct: 732 GAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRDGVALDYLLVPSTHSHET 791
Query: 181 PTID 184
ID
Sbjct: 792 SLID 795