Miyakogusa Predicted Gene

Lj6g3v1629770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1629770.1 tr|G7IKX1|G7IKX1_MEDTR Endoribonuclease Dicer
OS=Medicago truncatula GN=MTR_2g030490 PE=4
SV=1,72.22,0.000000000001,no description,NULL; HELICASE-RELATED,NULL;
P-loop containing nucleoside triphosphate
hydrolases,NUL,NODE_57511_length_371_cov_17.010782.path2.1
         (52 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 ...    68   1e-12
AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 | chr3:768020...    68   1e-12

>AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833
          REVERSE LENGTH=1388
          Length = 1388

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 41/52 (78%)

Query: 1  MVEEALPMELDNQVVPDALPFARSYQIEALDKAIRENTIVFLDTGSGKTLIA 52
          M  +A+  E  +QV    L FARSYQ+EAL+KAI++NTIVFL+TGSGKTLIA
Sbjct: 3  MDADAMETETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIA 54


>AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 |
          chr3:768020-774833 REVERSE LENGTH=1388
          Length = 1388

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 41/52 (78%)

Query: 1  MVEEALPMELDNQVVPDALPFARSYQIEALDKAIRENTIVFLDTGSGKTLIA 52
          M  +A+  E  +QV    L FARSYQ+EAL+KAI++NTIVFL+TGSGKTLIA
Sbjct: 3  MDADAMETETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIA 54