Miyakogusa Predicted Gene
- Lj6g3v1629750.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1629750.1 Non Chatacterized Hit- tr|F6HLZ3|F6HLZ3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,37.4,0.00000000002,TPR_1,Tetratricopeptide TPR-1; GLL1384
PROTEIN,NULL; TETRATRICOPEPTIDE REPEAT PROTEIN, TPR,NULL; no
,CUFF.59719.1
(573 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat (TPR... 305 8e-83
AT3G51280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 278 1e-74
AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 275 8e-74
AT5G48850.1 | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-l... 257 1e-68
AT1G04770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 241 8e-64
AT5G22794.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 65 2e-10
>AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:11184103-11185844
REVERSE LENGTH=450
Length = 450
Score = 305 bits (780), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 155/297 (52%), Positives = 204/297 (68%), Gaps = 30/297 (10%)
Query: 4 ERNSPARCFMTPPPPRLSSWRSTPSRSPIMMPLSERKR------SSPNKDDPYHVIHKVP 57
ER +P + TPPP R S + MP++ER+R SS + DP+H++HKVP
Sbjct: 6 ERRAPPGVYYTPPPARTSDHVAA-------MPMTERRRPPYSCSSSSERRDPFHIVHKVP 58
Query: 58 AGDSPYVKAKQVQLVDKDPGKAISLFWAAINAGDRVESALKDMALVMKQLNRSDEAIEAI 117
+GDSPYV+AK QL+DKDP +AISLFW AINAGDRV+SALKDMA+VMKQL RSDE IEAI
Sbjct: 59 SGDSPYVRAKHAQLIDKDPNRAISLFWTAINAGDRVDSALKDMAVVMKQLGRSDEGIEAI 118
Query: 118 KSFRHLCPPDSQESLDNILVELYKRSGRVDEEISMLHHKLKQIEDGVTFVGRTTKQARSQ 177
KSFR+LC +SQ+S+DN+L+ELYK+SGR++EE +L HKL+ +E G+ F GR ++ R Q
Sbjct: 119 KSFRYLCSFESQDSIDNLLLELYKKSGRIEEEAVLLEHKLQTLEQGMGFGGRVSRAKRVQ 178
Query: 178 GKKIHVTAEQEISRILGNLAWAYLQKGDYKAAEEHYR----------------KALSFEV 221
GK + +T EQE +RILGNL W +LQ +Y AE+HYR +AL E
Sbjct: 179 GKHVIMTIEQEKARILGNLGWVHLQLHNYGIAEQHYRFGFVTKIPNIDYCLVMRALGLER 238
Query: 222 DRNKQCNLAICLMQTNRITEAKFLLQAVTTASKHRKM-DDSCAKSFERASQMLMDME 277
D+NK CNLAICLM+ +RI EAK LL V + + D+ AKS++RA +ML ++E
Sbjct: 239 DKNKLCNLAICLMRMSRIPEAKSLLDDVRDSPAESECGDEPFAKSYDRAVEMLAEIE 295
>AT3G51280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:19037229-19038781 FORWARD
LENGTH=430
Length = 430
Score = 278 bits (710), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/235 (58%), Positives = 173/235 (73%), Gaps = 1/235 (0%)
Query: 43 SPNKDDPYHVIHKVPAGDSPYVKAKQVQLVDKDPGKAISLFWAAINAGDRVESALKDMAL 102
S + + +H IHKVP GDSPYV+AK VQLV+KDP +AI LFW AINAGDRV+SALKDMA+
Sbjct: 23 SRTQSESFHAIHKVPVGDSPYVRAKNVQLVEKDPERAIPLFWKAINAGDRVDSALKDMAI 82
Query: 103 VMKQLNRSDEAIEAIKSFRHLCPPDSQESLDNILVELYKRSGRVDEEISMLHHKLKQIED 162
VMKQ NR++EAIEAIKS R C +QESLDNIL++LYKR GR+D++I +L HKL I+
Sbjct: 83 VMKQQNRAEEAIEAIKSLRVRCSDQAQESLDNILLDLYKRCGRLDDQIGLLKHKLFLIQK 142
Query: 163 GVTFVGRTTKQARSQGKKIHVTAEQEISRILGNLAWAYLQKGDYKAAEEHYRKALSFEVD 222
G+ F G+ TK ARSQGKK V+ EQE +R+LGNL WA +Q+ ++ AE+ YR+ALS D
Sbjct: 143 GLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQRDNFVEAEDAYRRALSIAPD 202
Query: 223 RNKQCNLAICLMQTNRITEAKFLLQAVTTASKHR-KMDDSCAKSFERASQMLMDM 276
NK CNL ICLM+ RI EAK L+ V A + DS K++ERA QML D+
Sbjct: 203 NNKMCNLGICLMKQGRIDEAKETLRRVKPAVVDGPRGVDSHLKAYERAQQMLNDL 257
>AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:17857325-17859056 FORWARD
LENGTH=469
Length = 469
Score = 275 bits (702), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 145/273 (53%), Positives = 188/273 (68%), Gaps = 8/273 (2%)
Query: 5 RNSPARCFMTPPPPRLSSWRSTPSRSPIMMPLSERKRSSPNKDDPYHVIHKVPAGDSPYV 64
R + F+TPPP SW +T R I MP+SERKRS ++ +V GDSPYV
Sbjct: 7 RGAKGGGFLTPPP----SWHTT-RRVYIAMPISERKRSPLIENQESF---RVRTGDSPYV 58
Query: 65 KAKQVQLVDKDPGKAISLFWAAINAGDRVESALKDMALVMKQLNRSDEAIEAIKSFRHLC 124
+AK QLV KDP +AISLFWAAINAGDRV+SALKDM +V+KQLNR DE IEAIKSFR+LC
Sbjct: 59 RAKHAQLVSKDPNRAISLFWAAINAGDRVDSALKDMVVVLKQLNRFDEGIEAIKSFRYLC 118
Query: 125 PPDSQESLDNILVELYKRSGRVDEEISMLHHKLKQIEDGVTFVGRTTKQARSQGKKIHVT 184
P +SQ+S+DN+L+ELY +SGR+ E +L HKL+ +E + GR RS ++ + T
Sbjct: 119 PFESQDSIDNLLLELYMKSGRITEVAELLEHKLRTLEQDKHYGGRIKIAKRSHEEQNNKT 178
Query: 185 AEQEISRILGNLAWAYLQKGDYKAAEEHYRKALSFEVDRNKQCNLAICLMQTNRITEAKF 244
EQE +RILGNLAW +LQ +Y AE++YR ALS E D NK CNLAICL++ R EAK
Sbjct: 179 IEQEKARILGNLAWVHLQLHNYGIAEQYYRNALSLEPDNNKLCNLAICLIRMERTHEAKS 238
Query: 245 LLQAVTTASKHRKMDDSCAKSFERASQMLMDME 277
LL+ V + ++ ++ KSFERA++ML + E
Sbjct: 239 LLEDVKQSLGNQWKNEPFCKSFERATEMLAERE 271
>AT5G48850.1 | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:19805576-19807699 REVERSE
LENGTH=306
Length = 306
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 120/203 (59%), Positives = 154/203 (75%)
Query: 47 DDPYHVIHKVPAGDSPYVKAKQVQLVDKDPGKAISLFWAAINAGDRVESALKDMALVMKQ 106
D+ +HVIHKVP GD+PYV+AK QL++K+P AI FW AIN GDRV+SALKDMA+VMKQ
Sbjct: 24 DELFHVIHKVPCGDTPYVRAKHAQLIEKNPEMAIVWFWKAINTGDRVDSALKDMAVVMKQ 83
Query: 107 LNRSDEAIEAIKSFRHLCPPDSQESLDNILVELYKRSGRVDEEISMLHHKLKQIEDGVTF 166
L+RS+EAIEAIKSFR C +SQ+SLDN+L++LYK+ GR++E++ +L KL+QI G F
Sbjct: 84 LDRSEEAIEAIKSFRPRCSKNSQDSLDNVLIDLYKKCGRMEEQVELLKRKLRQIYQGEAF 143
Query: 167 VGRTTKQARSQGKKIHVTAEQEISRILGNLAWAYLQKGDYKAAEEHYRKALSFEVDRNKQ 226
G+ TK ARS GKK VT +QEISR+LGNL WAY+Q+ Y +AE YRKA E D NK
Sbjct: 144 NGKPTKTARSHGKKFQVTVQQEISRLLGNLGWAYMQQAKYLSAEAVYRKAQMVEPDANKS 203
Query: 227 CNLAICLMQTNRITEAKFLLQAV 249
CNLA+CL++ R E + +L V
Sbjct: 204 CNLAMCLIKQGRFEEGRLVLDDV 226
>AT1G04770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1336564-1337767 REVERSE
LENGTH=303
Length = 303
Score = 241 bits (616), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 122/217 (56%), Positives = 154/217 (70%), Gaps = 4/217 (1%)
Query: 33 MMPLSERKRSSPNKDD---PYHVIHKVPAGDSPYVKAKQVQLVDKDPGKAISLFWAAINA 89
MM + +R R +D Y+V+HK+P GDSPYV+AK VQLV+KD AI LFW AI A
Sbjct: 1 MMMMIQR-RGGERQDSSAAAYNVVHKLPHGDSPYVRAKHVQLVEKDAEAAIELFWIAIKA 59
Query: 90 GDRVESALKDMALVMKQLNRSDEAIEAIKSFRHLCPPDSQESLDNILVELYKRSGRVDEE 149
DRV+SALKDMAL+MKQ NR++EAI+AI+SFR LC +QESLDN+L++LYK+ GR++E+
Sbjct: 60 RDRVDSALKDMALLMKQQNRAEEAIDAIQSFRDLCSRQAQESLDNVLIDLYKKCGRIEEQ 119
Query: 150 ISMLHHKLKQIEDGVTFVGRTTKQARSQGKKIHVTAEQEISRILGNLAWAYLQKGDYKAA 209
+ +L KL I G F G+ TK ARS GKK VT E+E SRILGNL WAY+Q DY AA
Sbjct: 120 VELLKQKLWMIYQGEAFNGKPTKTARSHGKKFQVTVEKETSRILGNLGWAYMQLMDYTAA 179
Query: 210 EEHYRKALSFEVDRNKQCNLAICLMQTNRITEAKFLL 246
E YRKA E D NK CNL CL++ + EA+ +L
Sbjct: 180 EAVYRKAQLIEPDANKACNLCTCLIKQGKHDEARSIL 216
>AT5G22794.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: Tetratricopeptide repeat (TPR)-like
superfamily protein (TAIR:AT1G04770.1); Has 146 Blast
hits to 146 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:7608242-7611591 FORWARD LENGTH=237
Length = 237
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 122 HLCPPDSQESLDNILVELYKRSGRVDEEISMLHHKLKQIEDGVTFVGRTTKQARSQGKKI 181
H+ +QESL+N+L++LYK+ GR +E++ +L +L I F G+ K ARS G+K
Sbjct: 66 HISYGQAQESLENVLIDLYKKGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHGRKF 125
Query: 182 HVTAEQEISRIL 193
VT E+E SR+L
Sbjct: 126 QVTVEKETSRML 137