Miyakogusa Predicted Gene
- Lj6g3v1629660.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1629660.1 tr|Q9LT74|Q9LT74_ARATH Similarity to late
embryogenesis abundant protein OS=Arabidopsis thaliana
GN=,52.86,0.000000001,Root_cap,Root cap; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; seg,NULL,CUFF.59710.1
(369 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19430.1 | Symbols: | late embryogenesis abundant protein-re... 391 e-109
AT5G54370.1 | Symbols: | Late embryogenesis abundant (LEA) prot... 244 6e-65
AT5G60530.1 | Symbols: | late embryogenesis abundant protein-re... 243 2e-64
AT5G60520.1 | Symbols: | Late embryogenesis abundant (LEA) prot... 239 2e-63
AT1G54890.1 | Symbols: | Late embryogenesis abundant (LEA) prot... 226 2e-59
AT4G27400.1 | Symbols: | Late embryogenesis abundant (LEA) prot... 221 8e-58
>AT3G19430.1 | Symbols: | late embryogenesis abundant
protein-related / LEA protein-related |
chr3:6736382-6738330 REVERSE LENGTH=559
Length = 559
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/301 (62%), Positives = 235/301 (78%), Gaps = 10/301 (3%)
Query: 77 EKAKCKNKKFPRCYNTEHVCPAACPGPCEVDCNTCKPVCHCDRPGAVCQDPRFIGGDGIT 136
++ +CK ++ P CY E+ CPA CP C+VDC TCKPVC+CD+PG+VCQDPRFIGGDG+T
Sbjct: 261 KRVRCKKQRSP-CYGVEYTCPADCPRSCQVDCVTCKPVCNCDKPGSVCQDPRFIGGDGLT 319
Query: 137 FYFHGKKDSNFCLVSDPNLHINAHFIGRRNHNMKRDFTWVQSIAILFDHHQLFVGAEKTA 196
FYFHGKKDSNFCL+SDPNLHINAHFIG+R M RDFTWVQSIAILF H+L+VGA KTA
Sbjct: 320 FYFHGKKDSNFCLISDPNLHINAHFIGKRRAGMARDFTWVQSIAILFGTHRLYVGALKTA 379
Query: 197 TWEDSNDRLALSFDGEPITLHKSEGAMWKSS-----GVSIHR-DADTNSIVVEVEGKFRM 250
TW+DS DR+A+SFDG I+L + +GA W SS VS+ R + DTN++ VEVEG ++
Sbjct: 380 TWDDSVDRIAVSFDGNVISLPQLDGARWTSSPGVYPEVSVKRVNTDTNNLEVEVEGLLKI 439
Query: 251 TSKVIPITEEESRIHRYGITEEDCFAHLDVGFRFFSLSSEVSGVLGQTYKPDYVSRVNVG 310
T++V+PIT E+SRIH Y + E+DC AHLD+GF+F LS V GVLGQTY+ +YVSRV +G
Sbjct: 440 TARVVPITMEDSRIHGYDVKEDDCLAHLDLGFKFQDLSDNVDGVLGQTYRSNYVSRVKIG 499
Query: 311 AKMPVMGGAGKEFQTTSLFTPDCSVARFVGS--NNDEVVTLEMPAMNCVSGIDGQGVVCR 368
MPVMGG +EFQTT LF PDCS ARF G+ +N+ LE+P M+C SG+ G+GVVC+
Sbjct: 500 VHMPVMGG-DREFQTTGLFAPDCSAARFTGNGDSNNGRSKLELPEMSCASGLGGKGVVCK 558
Query: 369 R 369
R
Sbjct: 559 R 559
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 36 YATCNIKKYKYCYNLPQECPASCPGRCKVNCATCKPVC 73
+ATC IKKYK+CYNL CP CP C V CA+CKP+C
Sbjct: 14 HATCKIKKYKHCYNLEHVCPKFCPDSCHVECASCKPIC 51
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 79 AKCKNKKFPRCYNTEHVCPAACPGPCEVDCNTCKPVC 115
A CK KK+ CYN EHVCP CP C V+C +CKP+C
Sbjct: 15 ATCKIKKYKHCYNLEHVCPKFCPDSCHVECASCKPIC 51
>AT5G54370.1 | Symbols: | Late embryogenesis abundant (LEA)
protein-related | chr5:22075334-22076567 FORWARD
LENGTH=337
Length = 337
Score = 244 bits (623), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 181/306 (59%), Gaps = 23/306 (7%)
Query: 86 FPRCYNTEHVCPAACPGP---------CEVDCN--TCKPVC-----HCDRPGAVCQDPRF 129
+ RCY CP CP C DC+ TCK C +C+RPG+ C DPRF
Sbjct: 33 YTRCYRKYIRCPEECPSKTAMNSKNKVCYADCDRPTCKSQCRMRKPNCNRPGSACYDPRF 92
Query: 130 IGGDGITFYFHGKKDSNFCLVSDPNLHINAHFIGRRNHNMKRDFTWVQSIAILFDHHQLF 189
IGGDGI FYFHGK + F LVSD +L IN FIG R RDFTW+Q++ LF+ ++
Sbjct: 93 IGGDGIVFYFHGKSNEEFSLVSDSDLQINGRFIGHRPAGRARDFTWIQALGFLFNSNKFS 152
Query: 190 VGAEKTATWEDSNDRLALSFDGEPITLHKSEGAMWKS--SGVSIHRDADTNSIVVEVEGK 247
+ A KTA+W++ D L S+DG+ +++ + + W S + I R + NS++V ++ K
Sbjct: 153 LEAAKTASWDNEIDHLKFSYDGQDLSVPEETLSTWYSPNKDIKIERVSMRNSVIVTIKDK 212
Query: 248 FRMTSKVIPITEEESRIHRYGITEEDCFAHLDVGFRFFSLSSEVSGVLGQTYKPDYVSRV 307
+ V+P+T+E+ RIH Y + +DCFAHL+V FRFF+LS +V G+LG+TY+PD+ +
Sbjct: 213 AEIMINVVPVTKEDDRIHSYKVPSDDCFAHLEVQFRFFNLSPKVDGILGRTYRPDFQNPA 272
Query: 308 NVGAKMPVMGGAGKEFQTTSLFTPDCSVARFVGSNN--DEVVT-LEMPAMNCVSGI-DGQ 363
G MPV+GG F+T+SL + DC F S D V + +E ++C G G
Sbjct: 273 KPGVAMPVVGGE-DSFKTSSLLSNDCKTCIFSESQAEIDSVKSEIEYATLDCTRGASSGY 331
Query: 364 GVVCRR 369
G+VCR+
Sbjct: 332 GIVCRK 337
>AT5G60530.1 | Symbols: | late embryogenesis abundant
protein-related / LEA protein-related |
chr5:24334197-24335685 REVERSE LENGTH=439
Length = 439
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 175/289 (60%), Gaps = 24/289 (8%)
Query: 71 PVCIPKEKAKCKNKKFPRCYNTEHVCPAACPGP----------CEVDC-NTCKPVC---- 115
P+ +E+A C+ + CY VCP CP C +DC N C+ C
Sbjct: 143 PLPTGQEQAMCQGRG--SCYYKTLVCPGECPKRKPTKNKNTKGCFIDCTNKCEATCKWRK 200
Query: 116 -HCDRPGAVCQDPRFIGGDGITFYFHGKKDSNFCLVSDPNLHINAHFIGRRNHNMKRDFT 174
+C+ G++C DPRF+GGDG+ FYFHG K NF +VSD NL INAHFIG R RDFT
Sbjct: 201 TNCNGYGSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPVGRTRDFT 260
Query: 175 WVQSIAILFDHHQLFVGAEKTATWEDSNDRLALSFDGEPITLHKSEGAMWKS-SG----V 229
WVQ++ ++F++H+L + A + W++++D + +DGE ITL + E + W+ SG +
Sbjct: 261 WVQALNVMFENHKLVITANRVNQWDETSDAFTIRYDGELITLPEDEQSEWREISGQKKDI 320
Query: 230 SIHRDADTNSIVVEVEGKFRMTSKVIPITEEESRIHRYGITEEDCFAHLDVGFRFFSLSS 289
I R + NS+ V V +M +V PI +EE+R+H Y + ++D FAHL+ F+F LS
Sbjct: 321 IIERTDERNSVRVLVSDLVQMDIRVRPIGKEENRVHNYQLPQDDAFAHLETQFKFLDLSE 380
Query: 290 EVSGVLGQTYKPDYVSRVNVGAKMPVMGGAGKEFQTTSLFTPDCSVARF 338
V GVLG+TY+PDYVS G MPV+GG K +QT SLF+P C + RF
Sbjct: 381 LVEGVLGKTYRPDYVSSAKTGVPMPVLGGEDK-YQTPSLFSPTCRLCRF 428
>AT5G60520.1 | Symbols: | Late embryogenesis abundant (LEA)
protein-related | chr5:24331787-24332947 REVERSE
LENGTH=338
Length = 338
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 160/249 (64%), Gaps = 7/249 (2%)
Query: 96 CPAACPGPCEVDCNTCKPVCHCDRPGAVCQDPRFIGGDGITFYFHGKKDSNFCLVSDPNL 155
C C CEV C K +C+ G++C DPRF+GGDG+ FYFHG KD NF +VSD NL
Sbjct: 84 CFIDCSSKCEVTCKWRK--ANCNGYGSLCYDPRFVGGDGVMFYFHGNKDGNFAIVSDENL 141
Query: 156 HINAHFIGRRNHNMKRDFTWVQSIAILFDHHQLFVGAEKTATWEDSNDRLALSFDGEPIT 215
INAHFIG R RDFTWVQ+ +++FD H L + A+K A+W+DS D L + ++GE +
Sbjct: 142 QINAHFIGTRPAGRTRDFTWVQAFSVMFDSHNLVIAAKKVASWDDSVDSLVVRWNGEEVE 201
Query: 216 LHKSEGAMWK----SSGVSIHRDADTNSIVVEVEGKFRMTSKVIPITEEESRIHRYGITE 271
+ A W+ V + R + N++ V V G ++ +V PI +EE R+H+Y + +
Sbjct: 202 VPTEGEAEWRIDLDEREVIVERTDERNNVRVTVSGIVQIDIQVRPIGKEEDRVHKYQLPK 261
Query: 272 EDCFAHLDVGFRFFSLSSEVSGVLGQTYKPDYVSRVNVGAKMPVMGGAGKEFQTTSLFTP 331
+D FAHL+ F+FF+LS V GVLG+TY+P YVS V G MP+MGG K +QT SLF+P
Sbjct: 262 DDAFAHLETQFKFFNLSDLVEGVLGKTYRPGYVSPVKTGVPMPMMGGEDK-YQTPSLFSP 320
Query: 332 DCSVARFVG 340
C+V RF G
Sbjct: 321 LCNVCRFQG 329
>AT1G54890.1 | Symbols: | Late embryogenesis abundant (LEA)
protein-related | chr1:20463107-20464407 FORWARD
LENGTH=347
Length = 347
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 178/319 (55%), Gaps = 28/319 (8%)
Query: 77 EKAKCKNKKFPRCYNTEHVCPAACPG---------PCEVDC--NTCKPVC-----HCDRP 120
E C +K P C+ + CP CP C +DC CK C +C+
Sbjct: 31 ETKTCFQRKSP-CFLKKQTCPKQCPSFSPPNGSTKACVIDCFNPICKATCRNRKPNCNGK 89
Query: 121 GAVCQDPRFIGGDGITFYFHGKKDSNFCLVSDPNLHINAHFIGRRNHNMKRDFTWVQSIA 180
G+ C DPRFIGGDGI FYFHGK+D +F L+SD + +NA FIG R + RDFTW+QS+
Sbjct: 90 GSACLDPRFIGGDGIVFYFHGKRDEHFALISDVDFQVNARFIGLRPNGRARDFTWIQSLG 149
Query: 181 ILF--DHHQLFVGAEKTATWEDSNDRLALSFDGEPITLHKSEGAMWK---SSGVSIHRDA 235
++F + + A K W+ D L LS++G+ I+L K + ++W + I R +
Sbjct: 150 LIFGPNSKTFSLEATKAEKWDHQVDHLRLSYEGKEISLPKGDTSVWSPPLGDYIKIERTS 209
Query: 236 DTNSIVVEVEGKFRMTSKVIPITEEESRIHRYGITEEDCFAHLDVGFRFFSLSSEVSGVL 295
D NS++V ++ + V+P+T+E+ IH+YGI E+DCFAHL+V FRF LSS V GVL
Sbjct: 210 DINSVLVTLQDIAEIWINVVPVTKEDDIIHKYGIPEDDCFAHLEVQFRFLKLSSNVEGVL 269
Query: 296 GQTYKPDYVSRVNVGAKMPVMGGAGKEFQTTSLFTPDCSVARFVGSNND----EVVTLEM 351
G+TYK D+ + G MPV+GG K ++T SL C+ + G + E + L
Sbjct: 270 GRTYKEDFKNPAKPGVAMPVVGGEDK-YRTASLLETSCNACVYSGGSRSLDKIEPLLLNQ 328
Query: 352 PAMNCVSG-IDGQGVVCRR 369
++C G G G+ CR+
Sbjct: 329 NTVDCTGGSSSGVGIFCRK 347
>AT4G27400.1 | Symbols: | Late embryogenesis abundant (LEA)
protein-related | chr4:13705341-13706637 FORWARD
LENGTH=341
Length = 341
Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 182/326 (55%), Gaps = 25/326 (7%)
Query: 54 CPASCPGRCKVNCATCKPVCIPKEKAKCKNKKFPRCYNTEHVCPAACPGP-CEVDCNTCK 112
C + RC++ C P+E C + FP N +C C P CE C K
Sbjct: 31 CGGNATPRCQLRYIDC-----PEE---CPTEMFPNSQN--KICWVDCFKPLCEAVCRAVK 80
Query: 113 PVCHCDRPGAVCQDPRFIGGDGITFYFHGKKDSNFCLVSDPNLHINAHFIGRRNHNMKRD 172
P +C+ G++C DPRFIGGDGI FYFHGK + +F +VSDP+ INA F G R RD
Sbjct: 81 P--NCESYGSICLDPRFIGGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPAGRTRD 138
Query: 173 FTWVQSIAILFDHHQLFVGAEKTATWEDSNDRLALSFDGEPITLHKSEGAMWKSS--GVS 230
FTW+Q++ LF+ H+ + K ATW+ + D L + DG+ + + + + W SS +
Sbjct: 139 FTWIQALGFLFNSHKFSLETTKVATWDSNLDHLKFTIDGQDLIIPQETLSTWYSSDKDIK 198
Query: 231 IHRDADTNSIVVEVEGKFRMTSKVIPITEEESRIHRYGITEEDCFAHLDVGFRFFSLSSE 290
I R + NS++V ++ K + V+P+T+E+ RIH Y + +DCFAH +V F+F +LS +
Sbjct: 199 IERLTEKNSVIVTIKDKAEIMVNVVPVTKEDDRIHNYKLPVDDCFAHFEVQFKFINLSPK 258
Query: 291 VSGVLGQTYKPDYVSRVNVGAKMPVMGGAGKEFQTTSLFTPDCSVARFVGSNNDEVVTLE 350
V G+LG+TY+PD+ + G MPV+GG F+T+SL + C F S + V +
Sbjct: 259 VDGILGRTYRPDFKNPAKPGVVMPVVGGE-DSFRTSSLLSHVCKTCLF--SEDPAVASGS 315
Query: 351 MPAMNCVSGID-------GQGVVCRR 369
+ + + +D G G+VCR+
Sbjct: 316 VKPKSTYALLDCSRGASSGYGLVCRK 341