Miyakogusa Predicted Gene

Lj6g3v1618290.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1618290.2 Non Chatacterized Hit- tr|D7TKP7|D7TKP7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,67.11,0,seg,NULL; Toprim_4,Toprim domain; AAA_25,NULL; no
description,Toprim domain; P-loop containing nucle,CUFF.59703.2
         (695 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30680.1 | Symbols:  | toprim domain-containing protein | chr...   855   0.0  
AT1G30660.1 | Symbols:  | nucleic acid binding;nucleic acid bind...   338   1e-92

>AT1G30680.1 | Symbols:  | toprim domain-containing protein |
           chr1:10881665-10886060 FORWARD LENGTH=709
          Length = 709

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/643 (63%), Positives = 500/643 (77%), Gaps = 14/643 (2%)

Query: 52  FFTVFCSKPVSKHLPSPLRTNGYAGASYSTVPR---PARLENPEDSSVHM-KFEALKKKL 107
           F  V  S+PVSK+ P   RTNG +  SY+++PR   P   E   D  V + +   L++KL
Sbjct: 59  FRPVLASRPVSKNSPYYQRTNGLS--SYNSIPRVPTPVDTEVEADKRVVLSRLVTLRRKL 116

Query: 108 KVVGIETETCLPGQHNHLTCPECLGGNSAEKSLSLYIAPDWDSAVWVCFRGTCGWTGSTQ 167
              G++ E C PGQH+ L CP C GGNS EKSLSL+IAPD  SA W CFRG CG  G  +
Sbjct: 117 AEQGVDAENCPPGQHSGLICPTCEGGNSGEKSLSLFIAPDGSSATWNCFRGKCGLKGGVR 176

Query: 168 GFAGSSSYPTKKGQVIPVKK-KRALKEEDLELEPLCSELVAYFSERLITKETLQRNDVKQ 226
              G +S         P++K +R +  E +ELEPLC E+  YF+ R I+++TL+RN V Q
Sbjct: 177 ADGGLAS-------ADPIEKVERKITVEGIELEPLCDEIQDYFAARAISRKTLERNRVMQ 229

Query: 227 RKYGDQIVIAFPYHRNGTLVSCKYRDINKIFWQEADTEKILYGVDDIVGQSDIIIVEGEM 286
           ++ GD+IVIAF Y + G LVSCKYR + K+F+QE  T +ILYG+DDI   S++IIVEGE+
Sbjct: 230 KRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDIEKTSEVIIVEGEI 289

Query: 287 DKLAMEEAGFRNCVSVPDGAPPAVSSKELPPTEKDRKYQYLWNCKNELKQASRIILATDG 346
           DKLAMEEAGF NCVSVPDGAP  VSSKE+P  +KD KY++LWNC + LK+ASRI++ATDG
Sbjct: 290 DKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDYLKKASRIVIATDG 349

Query: 347 DQPGQALAEELARRIGKEKCWRVRWPKKGRDGNCKDANEVLMYLGPEALREVIENAELFP 406
           D PGQA+AEE+ARR+GKE+CWRV+WPKK  D + KDANEVLM  GP  L+E I +AE +P
Sbjct: 350 DGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPHLLKEAILDAEPYP 409

Query: 407 IRGLFNFRDYFDEIDAYYHRTQGYDIGLSTGWNNLNELYNVVPGELTIVTGVPNSGKSEW 466
           I GLF+F+D+FDEIDAYY RT G++ G+STGW NL+ LY+VVPGELT+VTG+PNSGKSEW
Sbjct: 410 ILGLFSFKDFFDEIDAYYDRTHGHEYGVSTGWKNLDNLYSVVPGELTVVTGIPNSGKSEW 469

Query: 467 IDALICNLNKSDGWKFALCSMENKVSQHARKLLEKHWKKPFINSRYGEHAERMSVEEYEQ 526
           IDA++CNLN S GWKFALCSMENKV  HARKLLEKH KKPF ++ YG   +RMSVEE ++
Sbjct: 470 IDAMLCNLNHSVGWKFALCSMENKVRDHARKLLEKHIKKPFFDADYGRSVQRMSVEEKDE 529

Query: 527 GKLWLSDTFYLIRCEDDALPNVKWVLELAKAAVLRHGVRGLVIDPYNELDHQRPPNQTET 586
           GK WL+DTFY IRCE D+LP++ WVLE AKAAVLR+G+RGLVIDPYNELDHQR P QTET
Sbjct: 530 GKKWLNDTFYPIRCEMDSLPSIDWVLERAKAAVLRYGIRGLVIDPYNELDHQRTPRQTET 589

Query: 587 EYVSQMLTLIKRFAQHHGCHVWFVAHPRQLHNWVGGPPNLYDISGSAHFINKCDNGIVIH 646
           EYVSQMLT IKRF+QHH CHVWFVAHP+QL +W GG PNLYDISGSAHFINKCDNGI++H
Sbjct: 590 EYVSQMLTKIKRFSQHHSCHVWFVAHPKQLQHWDGGAPNLYDISGSAHFINKCDNGIIVH 649

Query: 647 RNRDPEAGALDQVQVCVRKVRNKVAGTIGEAFLAYNRVTGEYT 689
           RNRD  AG LD VQ+ VRKVRNKVAG IG+A+L Y+R TG Y+
Sbjct: 650 RNRDENAGPLDLVQIGVRKVRNKVAGQIGDAYLCYDRTTGSYS 692


>AT1G30660.1 | Symbols:  | nucleic acid binding;nucleic acid binding
           | chr1:10876853-10879017 FORWARD LENGTH=337
          Length = 337

 Score =  338 bits (866), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 181/348 (52%), Positives = 231/348 (66%), Gaps = 12/348 (3%)

Query: 61  VSKHLPSPLRTNGYAGASYSTVPRPARLENPEDSSVHMKFEALKKKLKVVGIETETCLPG 120
           +S+++P    TNG++ + +  VP     E      V  K   L +KL   GI+ + C PG
Sbjct: 1   MSENVPDHQSTNGFSSSDF-FVPE----EEAGKKVVLSKLVTLMRKLSEQGIDAQNCPPG 55

Query: 121 QHNHLTCPECLGGNSAEKSLSLYIAPDWDSAVWVCFRGTCGWTGSTQGFAGSSSYPTKKG 180
             + L CP+C  G+S EKSL+LYI PD  SA W C R  CG  G  Q   G        G
Sbjct: 56  VRSCLICPKCEVGDSGEKSLTLYIYPDGSSAKWTC-RRKCGLKGVLQ-VDGKLVSKDPIG 113

Query: 181 QVIPVKKKRALKEEDLELEPLCSELVAYFSERLITKETLQRNDVKQRKYGDQIVIAFPYH 240
           +V     +R +  E ++LEPLC E+  +F+ R I+ +TL+RN V Q++  D+IVIAF Y 
Sbjct: 114 KV-----ERKITVESIKLEPLCDEIQDFFAARAISGKTLERNRVMQKRIDDEIVIAFTYW 168

Query: 241 RNGTLVSCKYRDINKIFWQEADTEKILYGVDDIVGQSDIIIVEGEMDKLAMEEAGFRNCV 300
           + G LVSCKYR + K F QE +T KILYG+DDI   S+IIIVEGE DKLAMEEAGF NCV
Sbjct: 169 QRGELVSCKYRSLTKKFVQERNTRKILYGLDDIEETSEIIIVEGEPDKLAMEEAGFFNCV 228

Query: 301 SVPDGAPPAVSSKELPPTEKDRKYQYLWNCKNELKQASRIILATDGDQPGQALAEELARR 360
           SVPDGAP  VSSKE+P   KD  ++Y+WNC + LK+ASRI++ATDGD PGQALAEELARR
Sbjct: 229 SVPDGAPETVSSKEIPSESKDTAFKYIWNCNDYLKKASRIVIATDGDGPGQALAEELARR 288

Query: 361 IGKEKCWRVRWPKKGRDGNCKDANEVLMYLGPEALREVIENAELFPIR 408
           +GKE+CW V+WPKK  D + KDANEVLM  GP  L+E I NAE +P++
Sbjct: 289 LGKERCWLVKWPKKSEDEHFKDANEVLMSKGPHLLKEAILNAEPYPLK 336