Miyakogusa Predicted Gene

Lj6g3v1618210.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1618210.2 Non Chatacterized Hit- tr|B4FJA0|B4FJA0_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,29.52,1e-16,coiled-coil,NULL; seg,NULL,CUFF.59681.2
         (368 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19980.1 | Symbols:  | cytomatrix protein-related | chr1:6933...   202   3e-52

>AT1G19980.1 | Symbols:  | cytomatrix protein-related |
           chr1:6933162-6934643 FORWARD LENGTH=342
          Length = 342

 Score =  202 bits (514), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 201/365 (55%), Gaps = 50/365 (13%)

Query: 12  SSERKNWGNIFNLLVQMVRNQQNQLHSFANQHKLLEDRFKMQHERWLSDVRLHKDQISQM 71
           SSER+NW  IF  LV++++ +Q+QL S     K+LE   K  +E WLSDVR ++DQ+S M
Sbjct: 10  SSERENWETIFKSLVKILQTKQDQLESLLKDKKILESEIKTNNENWLSDVRNYEDQLSLM 69

Query: 72  KGFLMFEEKKGLLEAAKADLTLGFKHREASMLKWILEHTEDELVDFKACYDEYLSHISSD 131
              +   +   LLE  K++L  G K ++ S+    LEH+ DEL DFKA +D +L+  ++ 
Sbjct: 70  MKEIETTKMFQLLETYKSNLLCGLKEKDRSLCNLKLEHSLDELKDFKAWFD-FLTLNTNV 128

Query: 132 E----QNQGTVFKDASKRIKETTDSGNXXXXXXXXXXXXXXVIKDELSRLKGEYEKLALE 187
           E     ++GT  K    +I+                            +LK EYEKLA E
Sbjct: 129 ESVSGNSEGTAIKSLEAKIR----------------------------KLKLEYEKLASE 160

Query: 188 KNSELSALLAEKKFVWNQYNIMEKDYNDKLRSKQAEVEKANEKIRALVSSMEQLQSENIE 247
           K  E+S LL E  F WNQ+  +E ++ DKL+ K  E+ +AN KI +L+S  EQLQS N E
Sbjct: 161 KKCEVSDLLRENGFAWNQFKCIESEFTDKLKRKDDEIVQANTKISSLISYQEQLQSSNQE 220

Query: 248 KDSAISQLESKVADMEAETKRLNNQISGLSEELGSLRKCRNNQVAPVLKRCTEGTKTSDS 307
           KD  IS+L++K+A+ME  + + + +IS L+ +L S +K R     PVL RCT+  K S+ 
Sbjct: 221 KDETISRLKAKMAEMETNSTKKDEEISKLTRDLESAKKSRG--FTPVLTRCTKLEKRSNG 278

Query: 308 GTIKSSRRKNVTFNLKKEICTPDADSPAKLSEKDKKSLKRKGG----SVPASETPKLFSS 363
            T+ S        + KK     D  + +  +EK  KS KRK       V  SE PKLF+S
Sbjct: 279 NTVGSH------ISTKK-----DKSAASTTNEKVSKSSKRKRAKNMTPVSVSEVPKLFTS 327

Query: 364 SFKVP 368
           +F++P
Sbjct: 328 TFRLP 332