Miyakogusa Predicted Gene

Lj6g3v1618200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1618200.1 Non Chatacterized Hit- tr|E2NIF0|E2NIF0_9BACE
Putative uncharacterized protein OS=Bacteroides
cellul,30.8,4e-18,Toprim_4,Toprim domain; DNA primase core,NULL; no
description,Toprim domain; seg,NULL,CUFF.59678.1
         (386 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30680.1 | Symbols:  | toprim domain-containing protein | chr...   308   3e-84
AT1G30660.1 | Symbols:  | nucleic acid binding;nucleic acid bind...   293   1e-79

>AT1G30680.1 | Symbols:  | toprim domain-containing protein |
           chr1:10881665-10886060 FORWARD LENGTH=709
          Length = 709

 Score =  308 bits (790), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 169/335 (50%), Positives = 213/335 (63%), Gaps = 10/335 (2%)

Query: 50  SVAHATTTVPSPPDGGEQIVDDDIFDAPRMKMLKQKMDLLGIKLDNTCVPALYHNLRCPK 109
           S  ++   VP+P D   ++  D      R+  L++K+   G+  +N C P  +  L CP 
Sbjct: 82  SSYNSIPRVPTPVD--TEVEADKRVVLSRLVTLRRKLAEQGVDAEN-CPPGQHSGLICPT 138

Query: 110 CKGGRSKERSLSFHIISDCEFAMWRCFRPECGWAGRVFADDMELDGKVSAN--AKPYGQT 167
           C+GG S E+SLS  I  D   A W CFR +CG  G V AD     G  SA+   K   + 
Sbjct: 139 CEGGNSGEKSLSLFIAPDGSSATWNCFRGKCGLKGGVRADG----GLASADPIEKVERKI 194

Query: 168 TEKSLGLEPLGPQLLAYFKERLISEKTLSRNAVRQLSDSDDKKVIAFTYKQNGLLVGCKY 227
           T + + LEPL  ++  YF  R IS KTL RN V Q    D+  VIAFTY Q G LV CKY
Sbjct: 195 TVEGIELEPLCDEIQDYFAARAISRKTLERNRVMQKRIGDEI-VIAFTYWQRGELVSCKY 253

Query: 228 RTVEKRFWQGKGTDKVLYGIDDISHASEIIIVEGEIDKLSLEEAGFQNCVSVPVGAPGKV 287
           R++ K F+Q + T ++LYG+DDI   SE+IIVEGEIDKL++EEAGF NCVSVP GAP KV
Sbjct: 254 RSLTKMFFQERKTRRILYGLDDIEKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKV 313

Query: 288 SFKDLPPREKDTAYQYLWNCKEYLDKVVRIILATDNDQPGQALAEELARRLGHERCWRVH 347
           S K++P  +KDT Y++LWNC +YL K  RI++ATD D PGQA+AEE+ARRLG ERCWRV 
Sbjct: 314 SSKEIPSEDKDTKYKFLWNCNDYLKKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVK 373

Query: 348 WPKKDESSCFKDANEVLKYMGADALKRMVENAEPY 382
           WPKK E   FKDANEVL   G   LK  + +AEPY
Sbjct: 374 WPKKSEDEHFKDANEVLMSKGPHLLKEAILDAEPY 408


>AT1G30660.1 | Symbols:  | nucleic acid binding;nucleic acid binding
           | chr1:10876853-10879017 FORWARD LENGTH=337
          Length = 337

 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/309 (52%), Positives = 200/309 (64%), Gaps = 13/309 (4%)

Query: 78  RMKMLKQKMDLLGIKLDNTCVPALYHNLRCPKCKGGRSKERSLSFHIISDCEFAMWRCFR 137
           ++  L +K+   GI   N C P +   L CPKC+ G S E+SL+ +I  D   A W C R
Sbjct: 34  KLVTLMRKLSEQGIDAQN-CPPGVRSCLICPKCEVGDSGEKSLTLYIYPDGSSAKWTC-R 91

Query: 138 PECGWAGRVFADDMELDGKVSANAKPYGQTTEK----SLGLEPLGPQLLAYFKERLISEK 193
            +CG  G      +++DGK+  +  P G+   K    S+ LEPL  ++  +F  R IS K
Sbjct: 92  RKCGLKGV-----LQVDGKL-VSKDPIGKVERKITVESIKLEPLCDEIQDFFAARAISGK 145

Query: 194 TLSRNAVRQLSDSDDKKVIAFTYKQNGLLVGCKYRTVEKRFWQGKGTDKVLYGIDDISHA 253
           TL RN V Q    DD+ VIAFTY Q G LV CKYR++ K+F Q + T K+LYG+DDI   
Sbjct: 146 TLERNRVMQ-KRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGLDDIEET 204

Query: 254 SEIIIVEGEIDKLSLEEAGFQNCVSVPVGAPGKVSFKDLPPREKDTAYQYLWNCKEYLDK 313
           SEIIIVEGE DKL++EEAGF NCVSVP GAP  VS K++P   KDTA++Y+WNC +YL K
Sbjct: 205 SEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAFKYIWNCNDYLKK 264

Query: 314 VVRIILATDNDQPGQALAEELARRLGHERCWRVHWPKKDESSCFKDANEVLKYMGADALK 373
             RI++ATD D PGQALAEELARRLG ERCW V WPKK E   FKDANEVL   G   LK
Sbjct: 265 ASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPHLLK 324

Query: 374 RMVENAEPY 382
             + NAEPY
Sbjct: 325 EAILNAEPY 333