Miyakogusa Predicted Gene
- Lj6g3v1572430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1572430.1 Non Chatacterized Hit- tr|I1MGB0|I1MGB0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.25,0,S1,Ribosomal
protein S1, RNA-binding domain; coiled-coil,NULL; Nucleic acid-binding
proteins,Nucleic,CUFF.59629.1
(404 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr... 622 e-178
AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfam... 104 1e-22
AT3G23700.1 | Symbols: | Nucleic acid-binding proteins superfam... 100 2e-21
AT5G14580.1 | Symbols: | polyribonucleotide nucleotidyltransfer... 65 1e-10
AT4G29060.1 | Symbols: emb2726 | elongation factor Ts family pro... 64 2e-10
AT4G29060.2 | Symbols: emb2726 | elongation factor Ts family pro... 64 3e-10
AT3G11964.1 | Symbols: | RNA binding;RNA binding | chr3:3793957... 62 6e-10
>AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 |
chr5:11619262-11621223 REVERSE LENGTH=416
Length = 416
Score = 622 bits (1605), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/406 (74%), Positives = 359/406 (88%), Gaps = 11/406 (2%)
Query: 3 MASVAQQLSAVRWSPMLWR--------RSQKQRRGAG---TIVCSVAISNAQNKERAKLK 51
MAS+AQQ S +R SP+ ++ Q + A TIV +VA+S+ Q KER +LK
Sbjct: 1 MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMSSGQTKERLELK 60
Query: 52 QLFEDAYERCRTAPTDGVSFTLEQFTTALEKYDFDAEIGTKVKGTVFGTDASGAYVDITA 111
++FEDAYERCRT+P +GV+FT++ F A+E+YDF++EIGT+VKGTVF TDA+GA VDI+A
Sbjct: 61 KMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDISA 120
Query: 112 KSTAYLPLQEACIHKIKHVEEAGLVPGVRDEFVIIGENESDDTLFLSLKSIQFGLAWERC 171
KS+AYL +++ACIH+IKHVEEAG+VPG+ +EFVIIGENESDD+L LSL++IQ+ LAWERC
Sbjct: 121 KSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWERC 180
Query: 172 RQLQAEDAVVKGKIVNANKGGVVAEVEGLKGFVPFSQISTKSTGEELLEKEIPLKFVEVD 231
RQLQAED +VK K++ ANKGG+VA VEGL+GFVPFSQIS+K+ EELLEKEIPLKFVEVD
Sbjct: 181 RQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVEVD 240
Query: 232 EEQSRLILSHRKAVADSQGQLGIGSVVTGSVQSLKPYGAFIDIGGISGLLHVSQISHDRI 291
EEQ++L+LS+RKAVADSQ QLGIGSVV G VQSLKPYGAFIDIGGI+GLLHVSQISHDR+
Sbjct: 241 EEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHDRV 300
Query: 292 TDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 351
+DI+TVLQPGD LKVMILSHDR+RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360
Query: 352 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPAEGLDLS 397
QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGS+LP +G+DL+
Sbjct: 361 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELPDDGVDLT 406
>AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfamily
| chr1:26983744-26985893 FORWARD LENGTH=500
Length = 500
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 116/195 (59%), Gaps = 9/195 (4%)
Query: 166 LAWERCRQLQAEDAVVKGKIVNANKGGVVAEVEGLKGFVPFSQISTK-STGEELLE---K 221
+AW R RQ++ + ++ KI N GG++ +EGL+ F+P ++ K +T EL E +
Sbjct: 271 IAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELKENVGR 330
Query: 222 EIPLKFVEVDEEQSRLILSHRKAVADSQGQLGIGSVVTGSVQSLKPYGAFIDIG--GISG 279
++ ++E+++ LILS + VA + L G+++ G+V + PYGA + +G SG
Sbjct: 331 RFLVQITRLNEDKNDLILSEK--VAWEKLYLREGTLLEGTVVKILPYGAQVKLGDSSRSG 388
Query: 280 LLHVSQISHDRITDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLV 339
LLH+S I+ RI +S VLQ + +KV+++ ++SLS LE PG I + + V
Sbjct: 389 LLHISNITRRRIGSVSDVLQVDESVKVLVVKS-LFPDKISLSIADLESEPGLFISDREKV 447
Query: 340 FEKAEEMAQTFRQRI 354
F +AEEMA+ +R+++
Sbjct: 448 FTEAEEMAKKYREKM 462
>AT3G23700.1 | Symbols: | Nucleic acid-binding proteins superfamily
| chr3:8531689-8533742 REVERSE LENGTH=392
Length = 392
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 18/180 (10%)
Query: 168 WERCRQLQAEDAVVKGKIVNANKGGVVAEVEGLKGFVPFSQISTKSTGEE---------- 217
W+ + +G++ N GG++ L GF+P+ Q+S + +E
Sbjct: 97 WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156
Query: 218 -LLEKEIPLKFVEVDEEQSRLILSHRKAVADSQGQ-LGIGSVVTGSVQSLKPYGAFIDI- 274
L+ ++P+K V+ DEE +LILS + A+ Q + +G V G V S++ YGAFI +
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216
Query: 275 -----GGISGLLHVSQISHDRITDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTP 329
++GL+HVS++S D + D+ VL+ GD ++V++ + D+E+ R++LS K+LE P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276
>AT5G14580.1 | Symbols: | polyribonucleotide
nucleotidyltransferase, putative | chr5:4697612-4703013
REVERSE LENGTH=991
Length = 991
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 251 QLGIGSVVTGSVQSLKPYGAFIDI-GGISGLLHVSQISHDRITDISTVLQPGDILKVMIL 309
+L +G V G+V S+K YGAF++ GG GLLH+S++SH+ ++ +S VL G + M +
Sbjct: 674 ELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEPVSKVSDVLDIGQCITTMCI 733
Query: 310 SHDRERGRVSLSTKKLEPTP 329
D RG + LS K L P P
Sbjct: 734 ETD-VRGNIKLSRKALLPKP 752
>AT4G29060.1 | Symbols: emb2726 | elongation factor Ts family
protein | chr4:14317744-14321315 FORWARD LENGTH=953
Length = 953
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 251 QLGIGSVVTGSVQSLKPYGAFIDIGGIS-GLLHVSQISHDRITDISTVLQPGDILKVMIL 309
+L G+ TG V++++P+GAF+D G + GL+HVSQ+S + + D+S+V+ G +KV ++
Sbjct: 132 ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLV 191
Query: 310 SHDRERGRVSLSTKKLEPTP 329
D E R+SL+ ++ + P
Sbjct: 192 EADIESKRISLTMRENDDPP 211
>AT4G29060.2 | Symbols: emb2726 | elongation factor Ts family
protein | chr4:14317744-14321315 FORWARD LENGTH=709
Length = 709
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 251 QLGIGSVVTGSVQSLKPYGAFIDIGGIS-GLLHVSQISHDRITDISTVLQPGDILKVMIL 309
+L G+ TG V++++P+GAF+D G + GL+HVSQ+S + + D+S+V+ G +KV ++
Sbjct: 132 ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLV 191
Query: 310 SHDRERGRVSLSTKKLEPTP 329
D E R+SL+ ++ + P
Sbjct: 192 EADIESKRISLTMRENDDPP 211
>AT3G11964.1 | Symbols: | RNA binding;RNA binding |
chr3:3793957-3806626 REVERSE LENGTH=1896
Length = 1896
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 251 QLGIGSVVTGSVQSLKPYGAFIDIG--GISGLLHVSQISHDRITDISTVLQPGDILKVMI 308
+L +G +++G ++ ++P+G FIDI G+ GL H+SQ+S DR+ ++ + G+ ++ I
Sbjct: 1431 KLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKI 1490
Query: 309 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRF 368
L D E+ R+SL K GD + L + ++E +A D F
Sbjct: 1491 LKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPIND--PKSEVLAAVDDFGF 1548
Query: 369 QPESGLT------LSSDGILGPLGSDL 389
Q SG T + S + PL DL
Sbjct: 1549 QETSGGTSLVLAQVESRASIPPLEVDL 1575