Miyakogusa Predicted Gene

Lj6g3v1571420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1571420.1 Non Chatacterized Hit- tr|E0VUM3|E0VUM3_PEDHC
Serologically defined colon cancer antigen, putative
O,45.16,3e-18,DUF3441,Protein of unknown function DUF3441;
DUF814,Domain of unknown function DUF814; zf-CCHC,Zinc ,CUFF.59624.1
         (601 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49930.1 | Symbols: emb1441 | zinc knuckle (CCHC-type) family...   639   0.0  

>AT5G49930.1 | Symbols: emb1441 | zinc knuckle (CCHC-type) family
            protein | chr5:20308260-20312736 REVERSE LENGTH=1080
          Length = 1080

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/587 (58%), Positives = 392/587 (66%), Gaps = 56/587 (9%)

Query: 1    MRKVHWFEKFNWFISSENYLVISGCDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNH 60
            MRKVHWFEKFNWFISSENYLVISG DAQQNEMIVKRYMSKGDLYVHA+LHGASSTVIKNH
Sbjct: 529  MRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNH 588

Query: 61   KPEQPVPPLTLNQTGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRG 120
            KPEQ VPPLTLNQ GCFTVCHSQAWDSKIVTSAWWVYPHQV+KTAPTGEYLTVGSFMIRG
Sbjct: 589  KPEQNVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVTKTAPTGEYLTVGSFMIRG 648

Query: 121  KKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEETIDDHV-EADPLEEISDSESE 179
            KKNFLPPHPLIMGFGLLFRLDESSLG+HLNERRVRGEEE ++D V E    +E SD+ESE
Sbjct: 649  KKNFLPPHPLIMGFGLLFRLDESSLGAHLNERRVRGEEEGMNDVVMETHAPDEHSDTESE 708

Query: 180  KDTADGKSAGGSERNDNLSVDSHKSPSEVFHADSSQASLATVNTETEVSRDFPVKETITT 239
             +  +   +   E      VD  +S S     D+S   +++                   
Sbjct: 709  NEAVNEVVSASGE------VDLQES-STALSQDTSSLDMSS------------------- 742

Query: 240  NIGDGEELSDISGNGLTSVTPQLEELIDRALGLGSVAKSSTNYGVENSQIDSGSEQHFEQ 299
                    S I+   + S T QLE+L+DR LGLG+   +     +E S+ D   +   E+
Sbjct: 743  --------SGITEENVASATSQLEDLLDRTLGLGAATVAGKKDTIETSKDDMEEKMKQEE 794

Query: 300  NKPSVRDKPYISKAERRKVKKEQKYG-EADSSVEHGKDEPKLKDISANLPEKEVQNLNTC 358
                VRDKPY+SKAERRK+K  Q     AD +    K + K KD+S+     +    N  
Sbjct: 795  KNAVVRDKPYMSKAERRKLKMGQSGNTAADGNTGQEKQQRKEKDVSSLSQATKSIPDNKP 854

Query: 359  GGKKTSRGQRGKLKKIKEKYADQDEEERRIRMTLLASSGKAIKKE-ETSSGNEALDKGKK 417
             G+K SRGQRGKLKK+KEKYADQDE+ER+IRM LLASSGK  K + E+ +   A+ + KK
Sbjct: 855  AGEKVSRGQRGKLKKMKEKYADQDEDERKIRMALLASSGKPQKTDVESQNAKTAVTEVKK 914

Query: 418  PSTGPSDAPKICYKCKKVGHLSRDCKEKLLPGHAIDEAEQNPNMSASTTSPADRVAMXXX 477
            PS    DA KICY+CKKVGHL+RDC  K                    TS  D+V M   
Sbjct: 915  PSEETDDAVKICYRCKKVGHLARDCHGK-------------------ETSDMDKVVMEED 955

Query: 478  XXXXXXXXXXXXLNDVDYLTGIPLPNDILLYAVPVCAPYNAVQSYKYRVKIIPXXXXXXX 537
                        L DVDYLTG PLP DILLYAVPVC PYNA+QSYKYRVK IP       
Sbjct: 956  DIHEVGDEEKEKLIDVDYLTGNPLPTDILLYAVPVCGPYNALQSYKYRVKAIPGSMKKGK 1015

Query: 538  XXXXXMNLFSHMPDATNREKELMKACTDPELVAALVGNVKISAAGLT 584
                 MNLF+HM +A+ REKELMKACTDPEL+AALVGNVKI+AAGLT
Sbjct: 1016 AAKTAMNLFTHMSEASVREKELMKACTDPELMAALVGNVKITAAGLT 1062