Miyakogusa Predicted Gene

Lj6g3v1561410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1561410.1 Non Chatacterized Hit- tr|E9GES0|E9GES0_DAPPU
Putative uncharacterized protein OS=Daphnia pulex
GN=D,33.65,0.0001,IQ,IQ motif, EF-hand binding site,CUFF.59618.1
         (289 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17205.2 | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:...   355   3e-98
AT3G17205.3 | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:...   354   4e-98
AT3G17205.1 | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:...   354   4e-98

>AT3G17205.2 | Symbols: UPL6 | ubiquitin protein ligase 6 |
           chr3:5873528-5881132 FORWARD LENGTH=1015
          Length = 1015

 Score =  355 bits (910), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 169/289 (58%), Positives = 217/289 (75%)

Query: 1   MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNTAALKIQKCFRGRK 60
           MFFSGDPSTRKRVDLGGRS+KERD + LLEQTR+ERNRRL  +QQN+AALKIQK FRGR+
Sbjct: 1   MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61  VVRAEQSDLRERFLRIHGKNCQNLDRNAFGPDSDFLRQFLYFFNAENVDDFLVLVQICRL 120
            +  E+S +R  F   +G NCQN+DR+ F P S FLRQFL+FF A+N  DF++LV+ CRL
Sbjct: 61  SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121 LQQFVQESGDIVRLLAGADYSSVCALVNYRVKQLVHTCIRAIHHNRNQLKDQLLLTSKKS 180
           LQ FV  SGDIV L +G DYSS   LV++RVK+L  TCI AIH NRN+L+DQLL+T +++
Sbjct: 121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query: 181 NASAIPLLEVLVLLIDPKLPWSCKIVGYLSQNNAFSLLREIVLTGKDNVESCGYSEEGSS 240
           + S   L+E + LL+DPKLPW CKIV YL +   F L+RE+V T K++      +    S
Sbjct: 181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query: 241 LERLLTVLICHIGQKPCICSHIDQRYSFSSQILTIPFLWHTFPNLRQVF 289
           LER+L +++ HIG++PC C+ +D R+SFSS ILTIP +W  FPNL+ VF
Sbjct: 241 LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVF 289


>AT3G17205.3 | Symbols: UPL6 | ubiquitin protein ligase 6 |
           chr3:5873528-5881132 FORWARD LENGTH=1029
          Length = 1029

 Score =  354 bits (909), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 169/289 (58%), Positives = 217/289 (75%)

Query: 1   MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNTAALKIQKCFRGRK 60
           MFFSGDPSTRKRVDLGGRS+KERD + LLEQTR+ERNRRL  +QQN+AALKIQK FRGR+
Sbjct: 1   MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61  VVRAEQSDLRERFLRIHGKNCQNLDRNAFGPDSDFLRQFLYFFNAENVDDFLVLVQICRL 120
            +  E+S +R  F   +G NCQN+DR+ F P S FLRQFL+FF A+N  DF++LV+ CRL
Sbjct: 61  SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121 LQQFVQESGDIVRLLAGADYSSVCALVNYRVKQLVHTCIRAIHHNRNQLKDQLLLTSKKS 180
           LQ FV  SGDIV L +G DYSS   LV++RVK+L  TCI AIH NRN+L+DQLL+T +++
Sbjct: 121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query: 181 NASAIPLLEVLVLLIDPKLPWSCKIVGYLSQNNAFSLLREIVLTGKDNVESCGYSEEGSS 240
           + S   L+E + LL+DPKLPW CKIV YL +   F L+RE+V T K++      +    S
Sbjct: 181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query: 241 LERLLTVLICHIGQKPCICSHIDQRYSFSSQILTIPFLWHTFPNLRQVF 289
           LER+L +++ HIG++PC C+ +D R+SFSS ILTIP +W  FPNL+ VF
Sbjct: 241 LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVF 289


>AT3G17205.1 | Symbols: UPL6 | ubiquitin protein ligase 6 |
           chr3:5873528-5881132 FORWARD LENGTH=1029
          Length = 1029

 Score =  354 bits (909), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 169/289 (58%), Positives = 217/289 (75%)

Query: 1   MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNTAALKIQKCFRGRK 60
           MFFSGDPSTRKRVDLGGRS+KERD + LLEQTR+ERNRRL  +QQN+AALKIQK FRGR+
Sbjct: 1   MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61  VVRAEQSDLRERFLRIHGKNCQNLDRNAFGPDSDFLRQFLYFFNAENVDDFLVLVQICRL 120
            +  E+S +R  F   +G NCQN+DR+ F P S FLRQFL+FF A+N  DF++LV+ CRL
Sbjct: 61  SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121 LQQFVQESGDIVRLLAGADYSSVCALVNYRVKQLVHTCIRAIHHNRNQLKDQLLLTSKKS 180
           LQ FV  SGDIV L +G DYSS   LV++RVK+L  TCI AIH NRN+L+DQLL+T +++
Sbjct: 121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query: 181 NASAIPLLEVLVLLIDPKLPWSCKIVGYLSQNNAFSLLREIVLTGKDNVESCGYSEEGSS 240
           + S   L+E + LL+DPKLPW CKIV YL +   F L+RE+V T K++      +    S
Sbjct: 181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query: 241 LERLLTVLICHIGQKPCICSHIDQRYSFSSQILTIPFLWHTFPNLRQVF 289
           LER+L +++ HIG++PC C+ +D R+SFSS ILTIP +W  FPNL+ VF
Sbjct: 241 LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVF 289