Miyakogusa Predicted Gene
- Lj6g3v1525980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1525980.1 Non Chatacterized Hit- tr|F6HQT4|F6HQT4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,29.41,0.00000000000009,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; ZF_SWIM,Zinc finger, SWIM-type; SWIM,Zinc finger,
S,CUFF.59586.1
(268 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 | chr1:3... 224 4e-59
AT5G28530.1 | Symbols: FRS10 | FAR1-related sequence 10 | chr5:1... 140 1e-33
AT4G38170.1 | Symbols: FRS9 | FAR1-related sequence 9 | chr4:179... 74 8e-14
AT2G27110.2 | Symbols: FRS3 | FAR1-related sequence 3 | chr2:115... 71 8e-13
AT2G27110.1 | Symbols: FRS3 | FAR1-related sequence 3 | chr2:115... 71 8e-13
AT2G27110.3 | Symbols: FRS3 | FAR1-related sequence 3 | chr2:115... 71 8e-13
AT4G38180.1 | Symbols: FRS5 | FAR1-related sequence 5 | chr4:179... 67 9e-12
AT3G22170.2 | Symbols: FHY3 | far-red elongated hypocotyls 3 | c... 60 1e-09
AT3G22170.1 | Symbols: FHY3 | far-red elongated hypocotyls 3 | c... 60 1e-09
AT4G19990.1 | Symbols: FRS1 | FAR1-related sequence 1 | chr4:108... 56 3e-08
AT3G06250.1 | Symbols: FRS7 | FAR1-related sequence 7 | chr3:188... 56 3e-08
AT4G15090.1 | Symbols: FAR1 | FRS (FAR1 Related Sequences) trans... 56 3e-08
AT4G19990.2 | Symbols: FRS1 | FAR1-related sequence 1 | chr4:108... 55 5e-08
AT5G18960.1 | Symbols: FRS12 | FAR1-related sequence 12 | chr5:6... 55 7e-08
AT2G32250.4 | Symbols: FRS2 | FAR1-related sequence 2 | chr2:136... 54 1e-07
AT2G32250.2 | Symbols: FRS2 | FAR1-related sequence 2 | chr2:136... 54 1e-07
AT2G32250.3 | Symbols: FRS2 | FAR1-related sequence 2 | chr2:136... 54 1e-07
AT2G32250.1 | Symbols: FRS2 | FAR1-related sequence 2 | chr2:136... 54 1e-07
AT1G80010.1 | Symbols: FRS8 | FAR1-related sequence 8 | chr1:300... 50 2e-06
>AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 |
chr1:3356835-3359271 REVERSE LENGTH=680
Length = 680
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 105/185 (56%), Positives = 141/185 (76%), Gaps = 2/185 (1%)
Query: 1 MQRKLQKVCLKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHAHT 60
MQ+ LQ + LKTG+P+ESHAA+VLTP+A SKLQ++LVLA YASF +DEG + VRHH
Sbjct: 491 MQQNLQNISLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFQMDEG-YLVRHHTKL 549
Query: 61 DGGCKVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLSP 120
DGG KV+WVP E ISCSC LFEF+G LCRH LRV+ST NCF +PD+YLP RWR S
Sbjct: 550 DGGRKVYWVPQEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQVPDRYLPLRWRRISTSF 609
Query: 121 TNPFRGTNSRDQPDKIQFLESMVSTLLMESIETEERLDVACEQVPMVLSQIKTLPRSAHA 180
+ FR +N+ D +++Q L+++VSTL+ ES +++ERLD+A EQ ++LS+I+ P S+ A
Sbjct: 610 SKTFR-SNAEDHGERVQLLQNLVSTLVSESAKSKERLDIATEQTSILLSRIREQPVSSLA 668
Query: 181 VNDIT 185
+ DI+
Sbjct: 669 IRDIS 673
>AT5G28530.1 | Symbols: FRS10 | FAR1-related sequence 10 |
chr5:10525078-10527300 REVERSE LENGTH=685
Length = 685
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Query: 10 LKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHAHTDGGCKVFWV 69
LKT P+E HA +LTPYA S LQ+E+VL+ QYA + G F V H+ +G C V W
Sbjct: 513 LKTCMPMEDHARGILTPYAFSVLQNEMVLSVQYAVAEMANGPFIVHHYKKMEGECCVIWN 572
Query: 70 PCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLSPTNPFRGTNS 129
P E I CSC FE +GILCRH LRV++ NCFHIP+QY RWR SP N
Sbjct: 573 PENEEIQCSCKEFEHSGILCRHTLRVLTVKNCFHIPEQYFLLRWRQE--SPHVATENQNG 630
Query: 130 RD-QPDKIQFLESMVSTLLMESIETEERLDVACEQVPMVLSQIKT 173
+ D Q S+ TLL ES+ +++RLD A +++ +++ +++
Sbjct: 631 QGIGDDSAQTFHSLTETLLTESMISKDRLDYANQELSLLIDRVRN 675
>AT4G38170.1 | Symbols: FRS9 | FAR1-related sequence 9 |
chr4:17904613-17906439 FORWARD LENGTH=545
Length = 545
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 9 CLKTGSPIESHAATVLTPYALSKLQDELVLAPQY-ASFLVDEGC---FQVRHHAHTDGGC 64
+KT SP+E AA++ T A K Q+E V A+ + D G ++V G
Sbjct: 286 VMKTPSPMEKQAASLYTRAAFIKFQEEFVETLAIPANIISDSGTHTTYRVAKFGEVHKGH 345
Query: 65 KVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLSPTNPF 124
V + E +CSC +FE++GI+CRH+L V S N +P +YL RW
Sbjct: 346 TVSFDSLEVKANCSCQMFEYSGIICRHILAVFSAKNVLALPSRYLLRRWTKEA-----KI 400
Query: 125 RGTNSRDQPD 134
RGT +QP+
Sbjct: 401 RGTE--EQPE 408
>AT2G27110.2 | Symbols: FRS3 | FAR1-related sequence 3 |
chr2:11576969-11580405 REVERSE LENGTH=851
Length = 851
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 9 CLKTGSPIESHAATVLTPYALSKLQDELVLA-PQYASFLVDEGC---FQVRHHAHTDGGC 64
LKT SP+E+ AA + T K Q+ELV A+ + D+G F+V + + +
Sbjct: 466 VLKTPSPMENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFENDNKAY 525
Query: 65 KVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRW 113
V + E +CSC +FE +GILCRHVL V + N +P Y+ RW
Sbjct: 526 IVTFCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRW 574
>AT2G27110.1 | Symbols: FRS3 | FAR1-related sequence 3 |
chr2:11576969-11580405 REVERSE LENGTH=851
Length = 851
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 9 CLKTGSPIESHAATVLTPYALSKLQDELVLA-PQYASFLVDEGC---FQVRHHAHTDGGC 64
LKT SP+E+ AA + T K Q+ELV A+ + D+G F+V + + +
Sbjct: 466 VLKTPSPMENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFENDNKAY 525
Query: 65 KVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRW 113
V + E +CSC +FE +GILCRHVL V + N +P Y+ RW
Sbjct: 526 IVTFCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRW 574
>AT2G27110.3 | Symbols: FRS3 | FAR1-related sequence 3 |
chr2:11576969-11580259 REVERSE LENGTH=706
Length = 706
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 9 CLKTGSPIESHAATVLTPYALSKLQDELV-LAPQYASFLVDEGC---FQVRHHAHTDGGC 64
LKT SP+E+ AA + T K Q+ELV A+ + D+G F+V + + +
Sbjct: 321 VLKTPSPMENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFENDNKAY 380
Query: 65 KVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRW 113
V + E +CSC +FE +GILCRHVL V + N +P Y+ RW
Sbjct: 381 IVTFCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRW 429
>AT4G38180.1 | Symbols: FRS5 | FAR1-related sequence 5 |
chr4:17906702-17909404 REVERSE LENGTH=788
Length = 788
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 9 CLKTGSPIESHAATVLTPYALSKLQDELVLAPQY-ASFLVDEG---CFQVRHHAHTDGGC 64
LKT SP+E A+ + T + Q+ELV + AS D+G +QV +
Sbjct: 521 VLKTPSPMEKQASELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYGEAHKAH 580
Query: 65 KVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLS 119
V + E +CSC +FEF+GI+CRH+L V N +P Y+ RW S
Sbjct: 581 FVKFNVLEMRANCSCQMFEFSGIICRHILAVFRVTNLLTLPPYYILKRWTRNAKS 635
>AT3G22170.2 | Symbols: FHY3 | far-red elongated hypocotyls 3 |
chr3:7822359-7825414 REVERSE LENGTH=839
Length = 839
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 9 CLKTGSPIESHAATVLTPYALSKLQDELVLA----PQYASFLVDEGCFQVRHHAHTDGGC 64
+K+ SP E + V TP K Q E++ A P+ + F+V+ + +
Sbjct: 506 AMKSPSPFEKSVSEVYTPAVFKKFQIEVLGAIACSPREENRDATCSTFRVQDFEN-NQDF 564
Query: 65 KVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRW 113
V W + +SC C LFE+ G LCRH L V+ + IP QY+ RW
Sbjct: 565 MVTWNQTKAEVSCICRLFEYKGYLCRHTLNVLQCCHLSSIPSQYILKRW 613
>AT3G22170.1 | Symbols: FHY3 | far-red elongated hypocotyls 3 |
chr3:7822359-7825414 REVERSE LENGTH=839
Length = 839
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 9 CLKTGSPIESHAATVLTPYALSKLQDELVLA----PQYASFLVDEGCFQVRHHAHTDGGC 64
+K+ SP E + V TP K Q E++ A P+ + F+V+ + +
Sbjct: 506 AMKSPSPFEKSVSEVYTPAVFKKFQIEVLGAIACSPREENRDATCSTFRVQDFEN-NQDF 564
Query: 65 KVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRW 113
V W + +SC C LFE+ G LCRH L V+ + IP QY+ RW
Sbjct: 565 MVTWNQTKAEVSCICRLFEYKGYLCRHTLNVLQCCHLSSIPSQYILKRW 613
>AT4G19990.1 | Symbols: FRS1 | FAR1-related sequence 1 |
chr4:10832848-10835389 FORWARD LENGTH=687
Length = 687
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 10 LKTGSPIESHAATVLTPYALSKLQDELVLA----PQYASFL--VDEGCFQVRHHAHTDGG 63
LK+ SP A V T K Q E++ P+ S V++ F+V+ +
Sbjct: 381 LKSPSPFGKQMAEVYTREMFKKFQVEVLGGVACHPKKESEEDGVNKRTFRVQDYEQNRSF 440
Query: 64 CKVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRW 113
V W + CSC LFE G LCRH + V+ + IP QY+ RW
Sbjct: 441 V-VVWNSESSEVVCSCRLFELKGFLCRHAMIVLQMSGELSIPSQYVLKRW 489
>AT3G06250.1 | Symbols: FRS7 | FAR1-related sequence 7 |
chr3:1889771-1892065 REVERSE LENGTH=764
Length = 764
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 10 LKTGSPIESHAATVLTPYALSKLQDELVLAPQYASF-LVDEGC---FQVRHHAHTDGGCK 65
L+T P+E + T Q EL + Y +EG F VR + +
Sbjct: 592 LQTKEPVEEQCRRLYTLTIFRIFQSELAQSYNYLGLKTYEEGAISRFLVRKCGNENEKHA 651
Query: 66 VFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRW 113
V + + SCSC +FE+ G+LCRH+L+V + + +P +Y+ RW
Sbjct: 652 VTFSASNLNASCSCQMFEYEGLLCRHILKVFNLLDIRELPSRYILHRW 699
>AT4G15090.1 | Symbols: FAR1 | FRS (FAR1 Related Sequences)
transcription factor family | chr4:8614806-8617870
FORWARD LENGTH=827
Length = 827
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 9 CLKTGSPIESHAATVLTPYALSKLQDEL--VLA--PQYASFLVDEGCFQVRHHAHTDGGC 64
LK+ SP E AT T K Q E+ V+A P+ + F+V+ D
Sbjct: 497 ALKSPSPWEKQMATTYTHTIFKKFQVEVLGVVACHPRKEKEDENMATFRVQD-CEKDDDF 555
Query: 65 KVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLSPTNPF 124
V W + + C C +FE+ G LCRH L ++ IP QY+ RW S
Sbjct: 556 LVTWSKTKSELCCFCRMFEYKGFLCRHALMILQMCGFASIPPQYILKRWTKDAKSGVLAG 615
Query: 125 RGTNS-RDQPDKIQFLESMVSTLLMESIETEERLDVACEQVPMVLSQIKTLPRSAHAVND 183
G + + + + L S + L E +EE ++A + ++ +K +A N+
Sbjct: 616 EGADQIQTRVQRYNDLCSRATELSEEGCVSEENYNIA---LRTLVETLKNCVDMNNARNN 672
Query: 184 IT 185
IT
Sbjct: 673 IT 674
>AT4G19990.2 | Symbols: FRS1 | FAR1-related sequence 1 |
chr4:10832848-10835559 FORWARD LENGTH=774
Length = 774
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 10 LKTGSPIESHAATVLTPYALSKLQDELVLA----PQYASFL--VDEGCFQVRHHAHTDGG 63
LK+ SP A V T K Q E++ P+ S V++ F+V+ +
Sbjct: 446 LKSPSPFGKQMAEVYTREMFKKFQVEVLGGVACHPKKESEEDGVNKRTFRVQDYEQNRSF 505
Query: 64 CKVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRW 113
V W + CSC LFE G LCRH + V+ + IP QY+ RW
Sbjct: 506 V-VVWNSESSEVVCSCRLFELKGFLCRHAMIVLQMSGELSIPSQYVLKRW 554
>AT5G18960.1 | Symbols: FRS12 | FAR1-related sequence 12 |
chr5:6330556-6333071 FORWARD LENGTH=788
Length = 788
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 10 LKTGSPIESHAATVLTPYALSKLQDELVLAPQYASF-LVDEGC---FQVRHHAHTDGGCK 65
L+T P+E + T Q+ELV + Y +EG F VR +
Sbjct: 616 LQTKEPVEEQCRRLYTLTVFRIFQNELVQSYNYLCLKTYEEGAISRFLVRKCGNESEKHA 675
Query: 66 VFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRW 113
V + + SCSC +FE G+LCRH+L+V + + +P +Y+ RW
Sbjct: 676 VTFSASNLNSSCSCQMFEHEGLLCRHILKVFNLLDIRELPSRYILHRW 723
>AT2G32250.4 | Symbols: FRS2 | FAR1-related sequence 2 |
chr2:13693518-13696783 FORWARD LENGTH=805
Length = 805
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 77 CSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLSPTNPFRGTNSRDQPDK 135
CSCHLFE+ G LC+H + V+ + + +P QY+ RW +G N D+ DK
Sbjct: 512 CSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWSK---------KGNNKEDKNDK 561
>AT2G32250.2 | Symbols: FRS2 | FAR1-related sequence 2 |
chr2:13693518-13696783 FORWARD LENGTH=805
Length = 805
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 77 CSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLSPTNPFRGTNSRDQPDK 135
CSCHLFE+ G LC+H + V+ + + +P QY+ RW +G N D+ DK
Sbjct: 512 CSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWSK---------KGNNKEDKNDK 561
>AT2G32250.3 | Symbols: FRS2 | FAR1-related sequence 2 |
chr2:13693518-13696783 FORWARD LENGTH=807
Length = 807
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 77 CSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLSPTNPFRGTNSRDQPDK 135
CSCHLFE+ G LC+H + V+ + + +P QY+ RW +G N D+ DK
Sbjct: 512 CSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWSK---------KGNNKEDKNDK 561
>AT2G32250.1 | Symbols: FRS2 | FAR1-related sequence 2 |
chr2:13693518-13696783 FORWARD LENGTH=807
Length = 807
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 77 CSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLSPTNPFRGTNSRDQPDK 135
CSCHLFE+ G LC+H + V+ + + +P QY+ RW +G N D+ DK
Sbjct: 512 CSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWSK---------KGNNKEDKNDK 561
>AT1G80010.1 | Symbols: FRS8 | FAR1-related sequence 8 |
chr1:30097565-30099846 FORWARD LENGTH=725
Length = 725
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 29/124 (23%)
Query: 10 LKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHAHTDGGCKVFWV 69
LKT P ES A V T + QDE+ CF V H++G + V
Sbjct: 544 LKTTHPYESQMAKVFTMEIFRRFQDEVSAM---------SSCFGVTQ-VHSNGSASSYVV 593
Query: 70 PCEE-------------------HISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLP 110
E C C F F G CRHVL ++S N +P QY+
Sbjct: 594 KEREGDKVRDFEVIYETSAAAQVRCFCVCGGFSFNGYQCRHVLLLLSHNGLQEVPPQYIL 653
Query: 111 SRWR 114
RWR
Sbjct: 654 QRWR 657