Miyakogusa Predicted Gene
- Lj6g3v1480340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1480340.1 tr|B9HKI3|B9HKI3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_820184 PE=4
SV=1,37.12,3e-18,FAMILY NOT NAMED,NULL; no description,TRAF-type;
meprin and TRAF homology,MATH; MATH,MATH; TRAF doma,gene.g66282.t1.1
(298 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06600.3 | Symbols: UBP12 | ubiquitin-specific protease 12 | ... 92 3e-19
AT5G06600.2 | Symbols: UBP12 | ubiquitin-specific protease 12 | ... 92 3e-19
AT5G06600.1 | Symbols: UBP12 | ubiquitin-specific protease 12 | ... 92 3e-19
AT3G11910.1 | Symbols: UBP13 | ubiquitin-specific protease 13 | ... 84 1e-16
AT3G11910.2 | Symbols: UBP13 | ubiquitin-specific protease 13 | ... 84 1e-16
AT3G58260.1 | Symbols: | TRAF-like family protein | chr3:215737... 62 7e-10
AT2G25320.1 | Symbols: | TRAF-like family protein | chr2:107819... 61 1e-09
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:112431... 60 2e-09
AT3G58200.1 | Symbols: | TRAF-like family protein | chr3:215600... 60 2e-09
AT3G58210.1 | Symbols: | TRAF-like family protein | chr3:215626... 59 5e-09
AT3G58350.1 | Symbols: RTM3 | RESTRICTED TEV MOVEMENT 3 | chr3:2... 59 6e-09
AT3G58250.1 | Symbols: | TRAF-like family protein | chr3:215707... 57 1e-08
AT3G58360.1 | Symbols: | TRAF-like family protein | chr3:215935... 57 2e-08
AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:215890... 56 3e-08
AT3G58270.2 | Symbols: | Arabidopsis phospholipase-like protein... 55 6e-08
AT3G58270.1 | Symbols: | Arabidopsis phospholipase-like protein... 55 6e-08
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain... 53 2e-07
AT2G32870.1 | Symbols: | TRAF-like family protein | chr2:139449... 53 3e-07
AT3G17380.1 | Symbols: | TRAF-like family protein | chr3:595024... 52 4e-07
AT2G01790.1 | Symbols: | TRAF-like family protein | chr2:341322... 52 5e-07
AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:216048... 51 9e-07
AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:163287... 50 2e-06
AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:198390... 50 2e-06
AT5G52330.1 | Symbols: | TRAF-like superfamily protein | chr5:2... 49 3e-06
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:215646... 49 3e-06
AT5G43560.2 | Symbols: | TRAF-like superfamily protein | chr5:1... 49 4e-06
AT5G43560.1 | Symbols: | TRAF-like superfamily protein | chr5:1... 49 4e-06
AT3G58220.1 | Symbols: | TRAF-like family protein | chr3:215651... 49 5e-06
>AT5G06600.3 | Symbols: UBP12 | ubiquitin-specific protease 12 |
chr5:2020682-2027834 REVERSE LENGTH=985
Length = 985
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 80/132 (60%), Gaps = 25/132 (18%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
KFTWTI NFS+ + + S+ F +GG+ W+++++PKGN+ D LS+YL D + P
Sbjct: 56 KFTWTIPNFSR--QNTRKHYSDVFVVGGYK-WRILIFPKGNNVDH-LSMYLDVSDAASLP 111
Query: 64 NDWSIFANFNLALINQVYSQKTI---TKVEFN------------------NASSGFIVND 102
WS +A F+LA++NQ++++ T+ T+ +FN + S G++VND
Sbjct: 112 YGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVND 171
Query: 103 TCIVEVEIAVRK 114
T +VE E+AVRK
Sbjct: 172 TVLVEAEVAVRK 183
>AT5G06600.2 | Symbols: UBP12 | ubiquitin-specific protease 12 |
chr5:2019545-2027834 REVERSE LENGTH=1115
Length = 1115
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 80/132 (60%), Gaps = 25/132 (18%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
KFTWTI NFS+ + + S+ F +GG+ W+++++PKGN+ D LS+YL D + P
Sbjct: 55 KFTWTIPNFSR--QNTRKHYSDVFVVGGYK-WRILIFPKGNNVDH-LSMYLDVSDAASLP 110
Query: 64 NDWSIFANFNLALINQVYSQKTI---TKVEFN------------------NASSGFIVND 102
WS +A F+LA++NQ++++ T+ T+ +FN + S G++VND
Sbjct: 111 YGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVND 170
Query: 103 TCIVEVEIAVRK 114
T +VE E+AVRK
Sbjct: 171 TVLVEAEVAVRK 182
>AT5G06600.1 | Symbols: UBP12 | ubiquitin-specific protease 12 |
chr5:2019545-2027834 REVERSE LENGTH=1116
Length = 1116
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 80/132 (60%), Gaps = 25/132 (18%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
KFTWTI NFS+ + + S+ F +GG+ W+++++PKGN+ D LS+YL D + P
Sbjct: 56 KFTWTIPNFSR--QNTRKHYSDVFVVGGYK-WRILIFPKGNNVDH-LSMYLDVSDAASLP 111
Query: 64 NDWSIFANFNLALINQVYSQKTI---TKVEFN------------------NASSGFIVND 102
WS +A F+LA++NQ++++ T+ T+ +FN + S G++VND
Sbjct: 112 YGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVND 171
Query: 103 TCIVEVEIAVRK 114
T +VE E+AVRK
Sbjct: 172 TVLVEAEVAVRK 183
>AT3G11910.1 | Symbols: UBP13 | ubiquitin-specific protease 13 |
chr3:3761758-3770290 REVERSE LENGTH=1115
Length = 1115
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 25/132 (18%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
KFTWTI F++ + + S+ F +GG+ W+++++PKGN+ D LS+YL D + P
Sbjct: 55 KFTWTIPMFTRL--NTRKHYSDVFVVGGYK-WRILIFPKGNNVDH-LSMYLDVADAANLP 110
Query: 64 NDWSIFANFNLALINQV---YSQKTITKVEFNNASS------------------GFIVND 102
WS ++ F+LA++NQV YS + T+ +FN S G++VND
Sbjct: 111 YGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVND 170
Query: 103 TCIVEVEIAVRK 114
T ++E E+AVRK
Sbjct: 171 TVLIEAEVAVRK 182
>AT3G11910.2 | Symbols: UBP13 | ubiquitin-specific protease 13 |
chr3:3761758-3770290 REVERSE LENGTH=1114
Length = 1114
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 25/132 (18%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
KFTWTI F++ + + S+ F +GG+ W+++++PKGN+ D LS+YL D + P
Sbjct: 54 KFTWTIPMFTRL--NTRKHYSDVFVVGGYK-WRILIFPKGNNVDH-LSMYLDVADAANLP 109
Query: 64 NDWSIFANFNLALINQV---YSQKTITKVEFNNASS------------------GFIVND 102
WS ++ F+LA++NQV YS + T+ +FN S G++VND
Sbjct: 110 YGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVND 169
Query: 103 TCIVEVEIAVRK 114
T ++E E+AVRK
Sbjct: 170 TVLIEAEVAVRK 181
>AT3G58260.1 | Symbols: | TRAF-like family protein |
chr3:21573754-21575114 REVERSE LENGTH=321
Length = 321
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 5 FTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSI--- 61
FTW I N S E + S+ F +GG W++I YP+ ND+D LSL +Y G
Sbjct: 9 FTWVIKNLSTLQGLE--VRSKIFVVGGCK-WRLIAYPEVNDADGYLSLSVYLGVPDCCES 65
Query: 62 FPNDWSIFANFNLALINQV---YSQKTITKVEFN-NAS-----------------SGFIV 100
P+ W A F+L ++NQ+ SQ T+ F+ NA GF+V
Sbjct: 66 LPSGWKRHAKFSLTIVNQLSEGLSQVQETQAWFDENAPGWGFPPMLNLKDVSDKYGGFLV 125
Query: 101 NDTCIVEVEIAVRKHEHVNQVDPAVCSEIIEHVASDGEVVDFKSFGKIEKAFIPLLDEVC 160
ND +V V AV E V +D S E +D K F K+ + + ++ +
Sbjct: 126 NDEVMVAV--AVDVIEVVGSLDAPEMS----------ESMDIKGF-KVLPSQVKSVNRLF 172
Query: 161 SLHPSL-----IDCQQKRSRRFTEWAFTALGQVLHFLKSRKVKDMNADACSHLQALWEKL 215
HP + I Q ++ L + LH + +++ D S + +
Sbjct: 173 ESHPDIASKFSIKNQSLKTAYMN--VLLCLAETLH----QSPMEISEDDLSDAKTTLAYM 226
Query: 216 QTFNFELTWLQPHIRSALSMKSYIEKA---------QELKTMKENLATLEMETKSLKEKI 266
++ F+L WL+ + K E+A +ELK +++ ++LE K K +
Sbjct: 227 KSVGFKLDWLEKKLDELFEKKK--EEADKIRMQNIEEELKDLRQKCSSLEALLKKEKTGV 284
Query: 267 FTAE 270
A+
Sbjct: 285 LAAK 288
>AT2G25320.1 | Symbols: | TRAF-like family protein |
chr2:10781951-10788065 REVERSE LENGTH=1673
Length = 1673
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 31/140 (22%)
Query: 4 KFTWTINNFSKFADSEEE-----LC--SETFYIGGHPLWQVILYPKGNDSDDC-LSLYLY 55
KFTW I NF++ D ++ LC S+ F IG ++I+YP+G C LS++L
Sbjct: 404 KFTWRIENFTRLKDLLKKRKITGLCIKSKRFQIGNRDC-RLIVYPRGQSQPPCHLSVFLE 462
Query: 56 AGDLSIFPNDWSIFANFNLALINQVYSQKTITKVEFNNAS-------------------- 95
D S +DWS F + L+++NQ +K++TK N S
Sbjct: 463 VTD-SRSSSDWSCFVSHRLSVVNQRLEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQ 521
Query: 96 -SGFIVNDTCIVEVEIAVRK 114
SGF+V DT + E+ + K
Sbjct: 522 DSGFLVQDTVVFSAEVLILK 541
>AT1G31390.1 | Symbols: | TRAF-like family protein |
chr1:11243191-11244392 REVERSE LENGTH=268
Length = 268
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 3 EKFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGN--DSDDCLSLYLYAGDLS 60
+K TWTI NFS F S+ + S+ F +G W ++ YPKGN ++ CLSLYL D
Sbjct: 7 KKITWTIKNFS-FVQSQA-IDSDIFVVGDSK-WHLVAYPKGNGESTNKCLSLYLNVADFQ 63
Query: 61 IFPNDWSIFANFNLALINQV 80
PN W + L ++NQ+
Sbjct: 64 SLPNGWKRHIKYRLTVVNQM 83
>AT3G58200.1 | Symbols: | TRAF-like family protein |
chr3:21560086-21561358 REVERSE LENGTH=319
Length = 319
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
KF W I NFS E + S+ F +G W+++ YPKG + C SL+L D P
Sbjct: 8 KFRWVIKNFSSLGS--ERVFSDIFVVGSCK-WRLMAYPKGVRDNRCFSLFLVVTDFKTLP 64
Query: 64 NDWSIFANFNLALINQVYSQKTITK 88
DW L ++NQ+ + +I K
Sbjct: 65 CDWKRHTRLRLNVVNQLSEELSILK 89
>AT3G58210.1 | Symbols: | TRAF-like family protein |
chr3:21562645-21564067 REVERSE LENGTH=330
Length = 330
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKG-NDSDDCLSLYLYAGDLSIF 62
KFTW I NFS + + S F IGG W++++YP+G N S D LSL+L D
Sbjct: 8 KFTWVIQNFS--SSQSRVVPSNQFVIGGCK-WRLLVYPEGFNKSGDHLSLFLEVADPRSL 64
Query: 63 PNDWSIFANFNLALINQV-------------YSQK--------TITKVEFNNASSGFIVN 101
P WS A + L ++NQ ++QK I + + GF+VN
Sbjct: 65 PPGWSRHARYLLTIVNQHSDKISKRNEATKWFNQKIPGWGLSAMIPLTKLHAKDGGFLVN 124
Query: 102 DTCIVEVEIAV 112
D + E+ V
Sbjct: 125 DELKIVAEVNV 135
>AT3G58350.1 | Symbols: RTM3 | RESTRICTED TEV MOVEMENT 3 |
chr3:21591618-21592836 REVERSE LENGTH=301
Length = 301
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 50/309 (16%)
Query: 3 EKFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIF 62
+K TWTI NF+ + + S+ F +GG W + YPKG ++ + LSL+L +
Sbjct: 7 KKITWTIKNFASLLS--DLIYSDHFVVGGCK-WHLRAYPKGYNNANSLSLFLGVAVPTSL 63
Query: 63 PNDWSIFANFNLALINQVYSQKTITKV-----------------------EFNNASSGFI 99
P+ W F L L+NQ+ + + +K+ E + SGF+
Sbjct: 64 PSGWRRHTKFRLTLVNQLSDKLSQSKLNELEQWFDEKTTNWGLSSMCPLNEIHAKDSGFL 123
Query: 100 VNDTCIVEVEIAVRKHEHVNQVDPAVCSEIIEHVASDGEVVDFKSFGKIEKAFIPLLDEV 159
+N + VEI V E + ++D + E ++ E VD F ++ + + +
Sbjct: 124 LNGELKIVVEIKVL--ETIGKLD------VTEETSTITETVDVNGF-QLLPSQAKSVSRM 174
Query: 160 CSLHPSLI-DCQQKRSRRFTEWA--FTALGQVLHFLKSRKVKDMNADACSHLQALWEKLQ 216
+ HP L D + K T + +L + L L + KD DA L + ++
Sbjct: 175 FAKHPELASDLRPKNPNLRTGYMSLLLSLIETLSQLPQQMSKDDLLDAYDALGS----MR 230
Query: 217 TFNFELTWLQPHIRSALSMKSYIEKAQELKTMKENLATLEMETKSLKEKIFTAE--VDLE 274
F+L WL+ + +S K E+A E L +E E K +K+K E V+ E
Sbjct: 231 DAGFKLDWLEKKLYE-VSEKKENEEASE-----TGLQEMEEELKDMKQKCLEMEALVEKE 284
Query: 275 IARRHLAKG 283
A+ AK
Sbjct: 285 KAKVSTAKA 293
>AT3G58250.1 | Symbols: | TRAF-like family protein |
chr3:21570745-21572143 REVERSE LENGTH=317
Length = 317
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 123/304 (40%), Gaps = 54/304 (17%)
Query: 3 EKFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDS-DDCLSLYLYAGDLSI 61
+KF+W I NFS E++ S+ F I G W+++ +PKGND+ D LSLYL +
Sbjct: 9 KKFSWVIKNFSSL--QSEKIYSDQFVIDG-CRWRLLAFPKGNDTKSDHLSLYLDVAESES 65
Query: 62 FPNDWSIFANFNLALINQV---YSQKT------------------ITKVEFNNASSGFIV 100
P W A F+ ++N + SQ+ + +E SGF+V
Sbjct: 66 LPCGWRRHAQFSFTIVNHIPEKCSQRKETIHWFCEKVSDWGFTNLVPLIELKAEDSGFLV 125
Query: 101 NDTCIVEVEIAVRKHEHVNQVDPAVCSEIIEHV-ASDGEVVDFKSFGKI--EKAFIPLLD 157
+ VEI V E+I + S+ E +D F + + ++ L
Sbjct: 126 KGELKIVVEIEVL--------------EVIGLLNVSESESMDVNGFHVLPSQAKYVKSLF 171
Query: 158 EVCSLHPSLIDCQQKRSRRFTEWAFTALGQVLHFLKSRKVKDMNADACSHLQALWEKLQT 217
E+ HP + + +++ L ++ ++ R K+++ + + E L
Sbjct: 172 EI---HPDIATKFRIKNQYLKTGYMNVLLCLIETVR-RSPKEISKNDLADAYVALESLTD 227
Query: 218 FNFELTWLQPHI--------RSALSMKSYIEKAQELKTMKENLATLEMETKSLKEKIFTA 269
F+L WL+ + + A E +ELK +K + LE + +K K
Sbjct: 228 HGFKLDWLKKKLDQVTQKKEKEAAGETRMHEIGEELKDLKLKCSDLEAQLDKVKWKCSDL 287
Query: 270 EVDL 273
E L
Sbjct: 288 EAQL 291
>AT3G58360.1 | Symbols: | TRAF-like family protein |
chr3:21593505-21594866 REVERSE LENGTH=298
Length = 298
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 45/303 (14%)
Query: 1 MVEKFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLS 60
+ +K TW I NFS +++ S+ F +GG W+ ++YPKGN+ D L LYL D
Sbjct: 5 LAKKITWAIENFSSLHS--KKIYSDPFIVGGCK-WRFLVYPKGNNV-DYLFLYLEVADYE 60
Query: 61 IFPNDWSIFANFNLALINQVYSQKTITKV---------------------EFNNASSGFI 99
+W A + L ++NQ +++ E N SGF+
Sbjct: 61 SLSPEWRRHARYLLNVVNQNSVKRSKQNEEQKWFDVQSPRWGRLSMFPLNEINAKDSGFL 120
Query: 100 VNDTCIVEVEIAVRKHEHVNQVDPAVCSEIIEHVASDGEVVDFKSFGKIEKAFIPLLDEV 159
VN + EI V E + ++D + E ++ E +DF F ++ + + + +
Sbjct: 121 VNGELKIVAEIEVL--EVIGKLD------VSEETSTIMESMDFNGF-QLLPSQVDFVRHM 171
Query: 160 CSLHPSLIDCQQKRSRRFTEWAFTALGQVLHFLKSRKVKDMNADACSHLQALWEKLQTFN 219
HP + + ++ + L ++ L+ + D AL +
Sbjct: 172 FEKHPEIASEFRLKNPNLRAGYMSLLLSLIETLRQSPQELNKVDLAEGYVAL-RSITDAG 230
Query: 220 FELTWLQPHIRSALSMKSYIEKA---------QELKTMKENLATLEMETKSLKEKIFTAE 270
F++ WL+ + +S K E+A +EL+++K+ LE + + K ++F A+
Sbjct: 231 FKVDWLEKKL-VEISEKKNKEEAGETRMQEINEELESLKQKCLDLEAQLEKEKAEVFAAK 289
Query: 271 VDL 273
L
Sbjct: 290 SPL 292
>AT3G58340.1 | Symbols: | TRAF-like family protein |
chr3:21589071-21590401 REVERSE LENGTH=325
Length = 325
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 25/129 (19%)
Query: 3 EKFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIF 62
+KF W I NFS E C + G W+++ +PKG +D LSLYL D
Sbjct: 7 KKFCWEIKNFSSL---NSERCHSVPVVIGDCKWRLVAFPKGYKAD-YLSLYLEVADFKSL 62
Query: 63 PNDWSIFANFNLALINQVYSQKTITK---------------------VEFNNASSGFIVN 101
P+ W + F ++NQ+ + ++ + E N GF+VN
Sbjct: 63 PSGWRRYVKFRACIVNQLSQELSVQQETQRWFDQNAPGWGFENMLLLTELNAKDGGFLVN 122
Query: 102 DTCIVEVEI 110
++ E+
Sbjct: 123 GQVMIVAEV 131
>AT3G58270.2 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain |
chr3:21576033-21577655 REVERSE LENGTH=343
Length = 343
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
KFTW I NFS + + S+ F++ G W+++ +PKGN + LSLYL P
Sbjct: 8 KFTWVIKNFS--SQQSRKNYSDEFFVDGCK-WRLLAFPKGNGVEK-LSLYLAVAGSEFLP 63
Query: 64 NDWSIFANFNLALINQV---YSQKTITKVEFNNASS------------------GFIVND 102
+ W A F+ +++NQ+ SQ TK F+ ++S GF+VN
Sbjct: 64 DGWRRHAYFHFSVVNQLSDELSQARETKNWFDASTSDWGFTSMLSLKKLHDKDGGFLVNG 123
Query: 103 TCIVEVEIAVRKHEHVNQVDPAVCSE 128
+ V+++V E + ++D V SE
Sbjct: 124 ELKIVVDVSVL--EVIGKLDVPVESE 147
>AT3G58270.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain |
chr3:21576033-21577655 REVERSE LENGTH=343
Length = 343
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
KFTW I NFS + + S+ F++ G W+++ +PKGN + LSLYL P
Sbjct: 8 KFTWVIKNFS--SQQSRKNYSDEFFVDGCK-WRLLAFPKGNGVEK-LSLYLAVAGSEFLP 63
Query: 64 NDWSIFANFNLALINQV---YSQKTITKVEFNNASS------------------GFIVND 102
+ W A F+ +++NQ+ SQ TK F+ ++S GF+VN
Sbjct: 64 DGWRRHAYFHFSVVNQLSDELSQARETKNWFDASTSDWGFTSMLSLKKLHDKDGGFLVNG 123
Query: 103 TCIVEVEIAVRKHEHVNQVDPAVCSE 128
+ V+++V E + ++D V SE
Sbjct: 124 ELKIVVDVSVL--EVIGKLDVPVESE 147
>AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology
domain-containing protein | chr3:16343333-16346027
FORWARD LENGTH=564
Length = 564
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 24/131 (18%)
Query: 3 EKFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIF 62
EKFTW I NFS E + S+ F IGG W ++ YP G + LSLYL L
Sbjct: 4 EKFTWVIKNFSSL--QSEYIKSDIFVIGGCK-WCLLAYPNGKQNASYLSLYLDGPTLKTL 60
Query: 63 PNDWSIFANFNLALINQVYS---------------------QKTITKVEFNNASSGFIVN 101
P F L ++NQ+ ++ + + N GF+VN
Sbjct: 61 PCGCRRRIRFRLTVVNQLSENLSRRGEGKRWFDKKLPLCGYEEVLLLTKLNAKHGGFLVN 120
Query: 102 DTCIVEVEIAV 112
+ + E+ V
Sbjct: 121 NEVKIVAEVDV 131
>AT2G32870.1 | Symbols: | TRAF-like family protein |
chr2:13944968-13946776 REVERSE LENGTH=416
Length = 416
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGN--DSDDCLSLYLYAGDLSI 61
+FTW I FS F D EE E F +G W++++YPKGN + LSLYL+A D
Sbjct: 277 RFTWKITQFSSF-DGEEHSSYE-FTVGPR-RWKLVMYPKGNGDGKGNSLSLYLFASDYVT 333
Query: 62 FPNDWSIFANFNLALINQVYSQKTITKV-------------------------EFNNASS 96
A + L +++Q+ T+ E + +S
Sbjct: 334 NGPKGGTLAIYKLRVLDQLNRNHCETECRYWFPYNPVNQMDSLWGRPKFLPLEELHKSSR 393
Query: 97 GFIVNDTCIVEVEIAV 112
GF+VND + VEI++
Sbjct: 394 GFLVNDQIYIGVEISI 409
>AT3G17380.1 | Symbols: | TRAF-like family protein |
chr3:5950240-5952124 FORWARD LENGTH=309
Length = 309
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 28/155 (18%)
Query: 20 EELCSETFYIGGHPLWQVILYPKGNDSD---DCLSLYLYAGDLSIFPNDWSIFANFNLAL 76
E +E+F GG+ W+++LYP GN S D +S+YL D S W ++A F L L
Sbjct: 38 ERYETESFEAGGYK-WKLVLYPNGNKSKNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYL 96
Query: 77 INQVYSQ---------------------KTITKVEFNNASSGFIVNDTCIVEVEIAVRKH 115
++Q K I F++AS+G+++ DTC+ ++ V K
Sbjct: 97 LDQNKDNYLILQGNERRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKE 156
Query: 116 EHVNQVDPAVCSEIIEHVASDGEVVDFKSFGKIEK 150
+ + C +I+ S V ++F K++K
Sbjct: 157 RRSGRGE---CLSMIKDATSSKHVWKIENFSKLDK 188
>AT2G01790.1 | Symbols: | TRAF-like family protein |
chr2:341322-342480 REVERSE LENGTH=269
Length = 269
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 118/295 (40%), Gaps = 60/295 (20%)
Query: 7 WTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSD--DCLSLYLYAGDLSIFPN 64
W INNFS F DS+ + S+ F +GG W ++ P+GN++ D SLYL D P+
Sbjct: 11 WVINNFS-FLDSDR-VYSDIFVVGGCK-WCLLALPEGNNNYIYDYFSLYLCVPDSEYLPS 67
Query: 65 DWSIFANFNLALINQV-------------YSQKTITK--------VEFNNASSGFIVNDT 103
W A + ++NQV + +K T+ + F ++ GF+VN
Sbjct: 68 GWRRRAKVSFTMVNQVTGELSQQQEGVYWFDEKNTTQGFGSMFRLLVFQSSYKGFLVNGE 127
Query: 104 CIVEVEIAVRKHEHVNQVDPAVCSEIIEHVASDGEVVDFKSFGKIEKAFIPLLDEVCSLH 163
+ E+ V E + ++D + SE I+ D +S + + ++C
Sbjct: 128 VDIVAEVDV--VEVIGKLDVSEESESIDSNGFDVLASQVESVNSLFGKYPCFASKLCPKT 185
Query: 164 PSLIDCQQKRSRRFTEWAFTALGQVLHFLKSRKVKDM-NADACSHLQALWEKLQTFNFEL 222
P R + +L ++L + K++ N D AL + F+L
Sbjct: 186 P-----------RLKKNVVQSLNEIL----CKSTKELSNGDLAEAYSAL-RFVTKAGFKL 229
Query: 223 TWLQPHIRSALSMKSYIEKAQELKTMKENLATLEMETKSLKEKIFTAEVDLEIAR 277
WL+ ++ +T K L +E + K LK K + LE R
Sbjct: 230 DWLEKKLK---------------ETGKSRLQEIEEDLKDLKVKCADMDALLEFLR 269
>AT3G58410.1 | Symbols: | TRAF-like family protein |
chr3:21604871-21606229 REVERSE LENGTH=328
Length = 328
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 3 EKFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIF 62
+KF W I NFS ++ S F IG W++ +YPKGN+ D LSL+L D
Sbjct: 28 KKFAWVIKNFSSL--QCKKFYSVPFQIGDCK-WRLSIYPKGNNCD-YLSLFLEVADFKSL 83
Query: 63 PNDWSIFANFNLALINQ-------VYSQKTITKVEFNNASSGFIVNDTCIVEVEI 110
P+ W + L ++ Q +Y + + ++ GF+VN ++ E+
Sbjct: 84 PSGWRRYVKLRLYIVKQEMWGWGFLY---MLPLTKLHDEKEGFLVNGELMIVAEV 135
>AT3G44790.1 | Symbols: | TRAF-like family protein |
chr3:16328792-16330265 FORWARD LENGTH=324
Length = 324
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 28/131 (21%)
Query: 3 EKFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIF 62
EKFTW I NFS + + S+ F IGG W + KG + + LSL+L
Sbjct: 4 EKFTWVIKNFSSL--QSKYINSDKFVIGGCK-W----FLKGYQNANYLSLFLMVATSKTL 56
Query: 63 PNDWSIFANFNLALINQV---YSQK------------------TITKVEFNNASSGFIVN 101
P W + F L ++NQ+ SQ+ I+ + N GF+VN
Sbjct: 57 PCGWRRYTRFRLTVVNQLSDELSQQRETETWFDQNVVLSGNRHMISLTKLNAKKGGFLVN 116
Query: 102 DTCIVEVEIAV 112
+ + VE+ V
Sbjct: 117 NEVKIVVEVDV 127
>AT2G05420.1 | Symbols: | TRAF-like family protein |
chr2:1983901-1985341 FORWARD LENGTH=297
Length = 297
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 123/301 (40%), Gaps = 51/301 (16%)
Query: 6 TWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSD-------DCLSLYLYAGD 58
TW I NFS + + S+ F +G W++ YPKGN+ + L+LYL +
Sbjct: 11 TWVIENFSSLQSAS--IHSDQFVVGDCK-WRLKAYPKGNEKATYLAYRANNLALYLNVAN 67
Query: 59 LSIFPNDWSIFANFNLALINQ---VYSQKTITKVEFNNASS-----------------GF 98
FP W+ F+L L+NQ S+ T ++ F++ S+ GF
Sbjct: 68 SKSFPIGWTRHTKFSLTLVNQKSEKLSKLTESQHWFDHKSTSRGFPAMIPLTNLHTNEGF 127
Query: 99 IVND--TCIVEVEIAVRKHEHVNQVDPAVCSEIIEHVASDGEVVDFKSFGKIEKAFIPLL 156
+VN T + +VE+ E V ++D + S + E +D F +P +
Sbjct: 128 LVNGELTLVAKVEVL----EVVGKLDVSKKSSPVM------ETIDVNGF-----QVLPQI 172
Query: 157 DEVCSLHPSLIDCQQKRSRRFTEWAFTALGQVLHFLKS--RKVKDMNADACSHLQALWEK 214
+ V L +D K + + +L K+ + +D++ D S A
Sbjct: 173 ESVNRLFAKHLDIASKFRPKKPYMKTAYMNVLLSLTKTLCQSPQDLSNDDISGAGAALTY 232
Query: 215 LQTFNFELTWLQPHIRSALSMKSYIEKAQELKTMKENLATLEMETKSLKEKIFTAEVDLE 274
L+ F+L WL+ + + ++ LK ++E + E + KEK+ A L
Sbjct: 233 LREAGFKLDWLE--KKHGEIKEKKKKEEASLKRLQEMEKQIFNEAQIYKEKVLAARAPLS 290
Query: 275 I 275
+
Sbjct: 291 L 291
>AT5G52330.1 | Symbols: | TRAF-like superfamily protein |
chr5:21247596-21249732 REVERSE LENGTH=397
Length = 397
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
K TW I FS+ S+ E S F IGG+ W +++YP+G D + LSL+L +
Sbjct: 20 KNTWKIKKFSQI--SKREFASSVFEIGGYS-WHILMYPEGCDVSNHLSLFLCVANHDELL 76
Query: 64 NDWSIFANFNLALINQ 79
WS A F ++++++
Sbjct: 77 PGWSQLAQFTISVMHK 92
>AT3G58220.2 | Symbols: | TRAF-like family protein |
chr3:21564677-21566435 REVERSE LENGTH=453
Length = 453
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 5 FTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFPN 64
F+W I +FS + S+ F IGG W++I YP GN +SLY+ D P+
Sbjct: 13 FSWVIKDFSSLG--VRAIYSDEFVIGGCK-WRLIAYPMGNRIKKYMSLYVEVADSKHLPS 69
Query: 65 DWSIFANFNLALIN 78
WSI + ++N
Sbjct: 70 GWSINTELRMEVVN 83
>AT5G43560.2 | Symbols: | TRAF-like superfamily protein |
chr5:17501043-17505526 FORWARD LENGTH=1055
Length = 1055
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
K TWTI FS ++ EL + F +GG+ W +++YP+G D + LSL+L
Sbjct: 70 KNTWTIEKFSDI--NKRELRGDVFEVGGY-KWYILIYPQGCDVCNHLSLFLCVAHHEKLL 126
Query: 64 NDWSIFANFNLALINQ 79
WS FA F +A+ N+
Sbjct: 127 PGWSHFAQFTIAVSNK 142
>AT5G43560.1 | Symbols: | TRAF-like superfamily protein |
chr5:17501043-17505526 FORWARD LENGTH=1055
Length = 1055
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 4 KFTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFP 63
K TWTI FS ++ EL + F +GG+ W +++YP+G D + LSL+L
Sbjct: 70 KNTWTIEKFSDI--NKRELRGDVFEVGGY-KWYILIYPQGCDVCNHLSLFLCVAHHEKLL 126
Query: 64 NDWSIFANFNLALINQ 79
WS FA F +A+ N+
Sbjct: 127 PGWSHFAQFTIAVSNK 142
>AT3G58220.1 | Symbols: | TRAF-like family protein |
chr3:21565173-21566435 REVERSE LENGTH=351
Length = 351
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 5 FTWTINNFSKFADSEEELCSETFYIGGHPLWQVILYPKGNDSDDCLSLYLYAGDLSIFPN 64
F+W I +FS + S+ F IGG W++I YP GN +SLY+ D P+
Sbjct: 13 FSWVIKDFSSLGVRA--IYSDEFVIGGCK-WRLIAYPMGNRIKKYMSLYVEVADSKHLPS 69
Query: 65 DWSIFANFNLALIN 78
WSI + ++N
Sbjct: 70 GWSINTELRMEVVN 83