Miyakogusa Predicted Gene

Lj6g3v1468230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1468230.1 Non Chatacterized Hit- tr|G1QJI6|G1QJI6_NOMLE
Uncharacterized protein OS=Nomascus leucogenys
GN=NCAP,43.8,3e-17,DUF1032,Non-SMC condensin II complex, subunit
H2-like; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NU,CUFF.59529.1
         (692 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16730.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Non-SMC co...   543   e-154

>AT3G16730.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Non-SMC
           condensin II complex, subunit H2-like
           (InterPro:IPR009378); Has 249 Blast hits to 211 proteins
           in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145;
           Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes -
           66 (source: NCBI BLink). | chr3:5695633-5698863 REVERSE
           LENGTH=683
          Length = 683

 Score =  543 bits (1398), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 327/678 (48%), Positives = 423/678 (62%), Gaps = 42/678 (6%)

Query: 7   EPAGGGFHTVHAERDLQSNWEVDLAKKLEDYLLKICSGEITG-EEEGHIPVNFAEAALLL 65
           E  G   HTV  ERDL +NWEVDL++KLE+YLLKICSGEITG EE+G IPVNFAEAALLL
Sbjct: 8   EVRGERIHTVQPERDLVANWEVDLSEKLEEYLLKICSGEITGNEEDGQIPVNFAEAALLL 67

Query: 66  QGSIQVYSRKVEYLYSLVLKALEFLSQKRQQEHVDGTSAQPEESGPSAVADEENDEFWGL 125
           QGS+QVYS+KVEYLY+LVL+ LEFLS++R QE   GTS + E S    V +EEND FW +
Sbjct: 68  QGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQEQSKGTSNENEASSSRQVDEEENDLFWNV 127

Query: 126 DDIPVEEKNSLDASTGKEVNLDQFIKPPANLVVLEGDCLDAVGDGGELESYLLSTTDLYQ 185
           DDIPV+ KN LD+S G +    QF+KPPANLVVLEGDCLD  GDGGELESYLL+TT LY+
Sbjct: 128 DDIPVDTKNRLDSSVGGDTCPSQFVKPPANLVVLEGDCLDTSGDGGELESYLLATTHLYR 187

Query: 186 DFILLDSSDAVAVDEFLKGRKAVMTQNGTSRGFSNRKSFLSPR-RTGGSAHRASAAKSPR 244
           DFILLD  DAVAV+EFL        +N   RG S RKSF S   R+GGSA ++S  K+  
Sbjct: 188 DFILLDPCDAVAVNEFLGDNYGGKGRNSAHRGSSVRKSFHSSVGRSGGSARKSSVGKNQG 247

Query: 245 ANSNCSPKNLNF-DDNNA--GPSSPVSAGLDNCDFGFNMNDGFDTXXXXXXXXXXXXXPW 301
            N + SP   N  +D N   G   PV    ++ D GF+M++ +               PW
Sbjct: 248 TNVHLSPICGNGPNDQNCDQGSQPPV---FEDNDHGFDMDNEYGGAMDFSDTDADEDDPW 304

Query: 302 KPLNPHEPGNLRVKPFRKVKALRKTAINVTRPISTSTLFPPAKLHGPVSPELMELWEMRH 361
           KPLNP+EPG L+VKPF+KVK L+K   ++T+   TS +FP A+ +GP+S EL+E+W+M  
Sbjct: 305 KPLNPYEPGKLKVKPFKKVKILKKIGWSITKDHMTS-MFPLARPNGPISSELIEIWKMHG 363

Query: 362 PAHEREKESQPPPPLYEKLRQSLINEENETGGIFFNSEADNDDNEYDSGNPDF------- 414
            A + E+ SQ   P YEKLR+ L+N  N+  G   N   ++ DN  ++ N DF       
Sbjct: 364 CASKDEQASQ-DIPYYEKLREMLVNGGNQPCGANGNYNDNDKDNHDEANNGDFHDFGEHD 422

Query: 415 -DMPGSAFMDEDLPPGNNEHGVDDAHVNVD---EEFPNSQTSMEDLCRSHLNALLASIAE 470
            D     FMDED+    N+ G  + H N D       N Q S+EDLCRSHL+ALLA+IA+
Sbjct: 423 GDDAEHPFMDEDV-LNMNDGGAAEFH-NYDGFENGESNCQESLEDLCRSHLDALLANIAK 480

Query: 471 NEKQTEMAARVSTWKQRIEHNLEEQDSHPPFDIQDYGAKILDKXXXXXXXXXXXXXXXDL 530
           +EKQT++AARVSTWKQ+IE NLEEQ+ HPPFDIQ+YG +I++K               DL
Sbjct: 481 SEKQTDLAARVSTWKQKIEQNLEEQELHPPFDIQEYGDRIINK--LTVEESGNVETFTDL 538

Query: 531 VKGQEKYDVSRSFSALLQLVNNRDVDLERNGFEGGS-VCYTTDNPFHVKLLENDKNRENK 589
           +K QEK++V+R+FSALLQLVNN DVDLE+ G      +CYT   PF V+LL+   NR+N+
Sbjct: 539 MKDQEKHEVARAFSALLQLVNNGDVDLEKPGNSTNEPMCYTAVKPFSVRLLKV-HNRKNE 597

Query: 590 QPPLLXXXXXXXXXXXXXXXGGDANKTRRDKXXXXXXXXXXXXXXXXXAPGNCKFSVKLG 649
           +  +                       +R+                       K S+K+ 
Sbjct: 598 KRGIHLPQKRAKSPITKGKSHESPPPKKRNTCSVSSQTR--------------KVSLKIS 643

Query: 650 KVSS-GIRLSPESKRRRR 666
           K++  G+R +P SK+RR+
Sbjct: 644 KINGVGVRCTPNSKKRRK 661