Miyakogusa Predicted Gene

Lj6g3v1444590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1444590.1 tr|G7L2J4|G7L2J4_MEDTR 40S ribosomal protein S21
OS=Medicago truncatula GN=MTR_7g076530 PE=3 SV=1,92.59,7e-38,40S
RIBOSOMAL PROTEIN S21,Ribosomal protein S21e;
RS21B_ARATH_Q9M337;,Ribosomal protein S21e; Riboso,CUFF.59500.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27700.1 | Symbols:  | Ribosomal protein S21e  | chr5:9807541...   152   4e-38
AT3G53890.2 | Symbols:  | Ribosomal protein S21e  | chr3:1995558...   146   2e-36
AT3G53890.1 | Symbols:  | Ribosomal protein S21e  | chr3:1995558...   146   2e-36

>AT5G27700.1 | Symbols:  | Ribosomal protein S21e  |
          chr5:9807541-9808048 REVERSE LENGTH=82
          Length = 82

 Score =  152 bits (384), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 77/82 (93%)

Query: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
          MQNEEGQ+TELYIPRKCSATNRLIT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSAIDRLWQKKKAEIKQH 82
          QGDADS +DRLWQKKK E KQ+
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQN 82


>AT3G53890.2 | Symbols:  | Ribosomal protein S21e  |
          chr3:19955582-19956049 REVERSE LENGTH=82
          Length = 82

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 75/82 (91%)

Query: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
          M+N+ GQ+TELYIPRKCSATNR+IT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSAIDRLWQKKKAEIKQH 82
          QGDADS +DRLWQKKK E KQ 
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82


>AT3G53890.1 | Symbols:  | Ribosomal protein S21e  |
          chr3:19955582-19956049 REVERSE LENGTH=82
          Length = 82

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 75/82 (91%)

Query: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
          M+N+ GQ+TELYIPRKCSATNR+IT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSAIDRLWQKKKAEIKQH 82
          QGDADS +DRLWQKKK E KQ 
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82