Miyakogusa Predicted Gene

Lj6g3v1444540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1444540.1 tr|C1N8I6|C1N8I6_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_3024,59.57,9e-19,seg,NULL;
coiled-coil,NULL,CUFF.59497.1
         (121 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15790.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   145   8e-36

>AT4G15790.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
           growth stages; Has 411 Blast hits to 380 proteins in 121
           species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi
           - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127
           (source: NCBI BLink). | chr4:8982390-8984069 FORWARD
           LENGTH=147
          Length = 147

 Score =  145 bits (365), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 82/93 (88%)

Query: 16  KENITPISSKIAELNESRSELLGRIQGLKQDLQGWRSKLDTQVKVYRDELSELKKTLNVE 75
           K+N  P+ SK+ ELNESR+ELL RIQ LKQDLQ WR KLDTQVKVYR+ELS LKKTLN+E
Sbjct: 25  KDNTNPVDSKLTELNESRAELLNRIQNLKQDLQSWRGKLDTQVKVYREELSGLKKTLNLE 84

Query: 76  VEQLRTEFQDLRTTLQQQQEDVTASLRNLGLQD 108
           VEQLR EF+DL+TTL QQQ+DV+ASL++LGLQD
Sbjct: 85  VEQLREEFKDLKTTLNQQQDDVSASLKSLGLQD 117