Miyakogusa Predicted Gene

Lj6g3v1422210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1422210.2 tr|B9N510|B9N510_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_581778 PE=4
SV=1,65.28,3e-19,coiled-coil,NULL; seg,NULL,CUFF.59485.2
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18540.1 | Symbols:  | unknown protein; Has 2026 Blast hits t...    90   4e-19
AT5G18540.2 | Symbols:  | unknown protein; Has 1784 Blast hits t...    90   5e-19

>AT5G18540.1 | Symbols:  | unknown protein; Has 2026 Blast hits to
           792 proteins in 129 species: Archae - 2; Bacteria - 12;
           Metazoa - 1126; Fungi - 267; Plants - 292; Viruses - 0;
           Other Eukaryotes - 327 (source: NCBI BLink). |
           chr5:6153924-6155877 FORWARD LENGTH=168
          Length = 168

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 57/70 (81%)

Query: 12  RLAHPGGPLATNKAAALAKFLERKLKEPNGMDHINPDLLELAVNNAKQTVYASSASTSKR 71
           RLAHPGGPL TNKAAALAKFLERKL++PNG+  I+P L+ELAV NAK TV +S AS+S R
Sbjct: 39  RLAHPGGPLKTNKAAALAKFLERKLQDPNGLASIDPALVELAVKNAKDTVISSGASSSGR 98

Query: 72  TVRHVEFFGD 81
            ++HV  F D
Sbjct: 99  RIQHVASFED 108


>AT5G18540.2 | Symbols:  | unknown protein; Has 1784 Blast hits to
           634 proteins in 116 species: Archae - 0; Bacteria - 0;
           Metazoa - 1013; Fungi - 200; Plants - 288; Viruses - 0;
           Other Eukaryotes - 283 (source: NCBI BLink). |
           chr5:6153924-6155877 FORWARD LENGTH=166
          Length = 166

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 57/70 (81%)

Query: 12  RLAHPGGPLATNKAAALAKFLERKLKEPNGMDHINPDLLELAVNNAKQTVYASSASTSKR 71
           RLAHPGGPL TNKAAALAKFLERKL++PNG+  I+P L+ELAV NAK TV +S AS+S R
Sbjct: 39  RLAHPGGPLKTNKAAALAKFLERKLQDPNGLASIDPALVELAVKNAKDTVISSGASSSGR 98

Query: 72  TVRHVEFFGD 81
            ++HV  F D
Sbjct: 99  RIQHVASFED 108