Miyakogusa Predicted Gene

Lj6g3v1417030.4

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1417030.4 Non Chatacterized Hit- tr|I1F931|I1F931_AMPQE
Uncharacterized protein (Fragment) OS=Amphimedon
queen,28.9,0.00000000004,YqaJ,YqaJ viral recombinase; Restriction
endonuclease-like,Restriction endonuclease  type II--like;
,CUFF.59470.4
         (319 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13810.1 | Symbols:  | Restriction endonuclease, type II-like...   278   3e-75
AT1G67660.1 | Symbols:  | Restriction endonuclease, type II-like...   166   2e-41
AT1G67660.3 | Symbols:  | Restriction endonuclease, type II-like...   166   2e-41
AT1G67660.2 | Symbols:  | Restriction endonuclease, type II-like...   166   3e-41

>AT1G13810.1 | Symbols:  | Restriction endonuclease, type II-like
           superfamily protein | chr1:4734088-4735164 FORWARD
           LENGTH=303
          Length = 303

 Score =  278 bits (711), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/276 (50%), Positives = 177/276 (64%), Gaps = 5/276 (1%)

Query: 47  NNPSRRSGSVDSLLKYTSSETYPVLQASSLQHWFKNWQELRKYKLTASTFAGAIGFWPRR 106
           N P   S ++  ++   S +   V+      HW KNW++LRK +LTAS FA AIGF P  
Sbjct: 26  NEPEPDSKAISEIVGIVSKKEEAVVVTEPTHHWRKNWEDLRKNRLTASNFARAIGFSPDG 85

Query: 107 RVQLWLEKIGAIEPFHGNLATCWSNIKEEEALERYKLITGNTVLFPEFQVY--SVKPEDD 164
           R  LWLEKIGA +PF GN AT W    E EALERY  +TGN +L PEF VY     PE++
Sbjct: 86  RRNLWLEKIGAAKPFAGNRATFWDIENEVEALERYNELTGNEILIPEFVVYKNGESPEEN 145

Query: 165 WLAASPDGV---VVYELPSSGVLEIKCPYFNGDKNKAFPWSRIPLYCIPQAQGLMEILGT 221
           WL ASPDGV   V   + S GVLE+KCP+ N D +K +PW ++P  C+PQ QGLMEI+ T
Sbjct: 146 WLGASPDGVINVVKDGVTSCGVLEVKCPFDNRDNSKVYPWKKVPYNCVPQLQGLMEIVDT 205

Query: 222 DWMDFYVWTLNGSSLFRLYRDAEYWDVMKTALSDFWLNHVLPARELYSSNVITDPLYQLR 281
           DW+D Y WT NGSSLFR++RD  +W+ MK AL DFW NHVLPARE+Y++  I DP  +LR
Sbjct: 206 DWLDLYCWTRNGSSLFRVWRDTAFWEDMKPALFDFWQNHVLPAREIYNNFDIKDPQVKLR 265

Query: 282 SLRPAPRHELCSYIVYKSKHIVDNSQLLMREFNGKL 317
             +P   HE C  I+  ++ I  N+  L  E +G L
Sbjct: 266 EFKPKHWHEDCKKIMRGAERISANANRLFYEIDGNL 301


>AT1G67660.1 | Symbols:  | Restriction endonuclease, type II-like
           superfamily protein | chr1:25363587-25365069 FORWARD
           LENGTH=355
          Length = 355

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 81  KNWQELRKYKLTASTFAGAIGFWP-RRRVQLWLEKI----GAIEPFHGNLATCWSNIKEE 135
           + W  LRK KLT STF+ A+GFW   RR +LW EK+      +       A  W    E 
Sbjct: 119 EEWFALRKDKLTTSTFSTALGFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMES 178

Query: 136 EALERYKLITGNTVLFPEFQVYSVKPEDDWLAASPDGVVVYELPSSGVLEIKCPYFNGDK 195
            A+ERYK I G  V    F ++S   E  WL ASPDG+    L   G+LE+KCPY  G  
Sbjct: 179 SAIERYKRIMGCEVGTMGFAIHS-NEEFHWLGASPDGI----LDCFGILEVKCPYNKGKT 233

Query: 196 NKAFPWSRIPLYCIPQAQGLMEILGTDWMDFYVWTLNGSSLFRLYRDAEYWDVMKTALSD 255
               PW ++P Y +PQ QG MEI+  +W++ Y WT NGS++FR+ RD  YW ++   L +
Sbjct: 234 ETVLPWKKVPYYYMPQLQGQMEIMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHDVLRE 293

Query: 256 FWLNHVLPARELYSSNVITDPLYQLRSLRPAPRHELCSYIVYKSKHIVDNSQLLMREFNG 315
           FW   V+PARE     ++     +++   P   H+     + KS ++   S+L+ RE   
Sbjct: 294 FWWESVIPAREAL---LLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLAAESKLVCREIAD 350

Query: 316 KLQ 318
            ++
Sbjct: 351 HVE 353


>AT1G67660.3 | Symbols:  | Restriction endonuclease, type II-like
           superfamily protein | chr1:25364065-25365069 FORWARD
           LENGTH=334
          Length = 334

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 81  KNWQELRKYKLTASTFAGAIGFWP-RRRVQLWLEKI----GAIEPFHGNLATCWSNIKEE 135
           + W  LRK KLT STF+ A+GFW   RR +LW EK+      +       A  W    E 
Sbjct: 98  EEWFALRKDKLTTSTFSTALGFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMES 157

Query: 136 EALERYKLITGNTVLFPEFQVYSVKPEDDWLAASPDGVVVYELPSSGVLEIKCPYFNGDK 195
            A+ERYK I G  V    F ++S   E  WL ASPDG+    L   G+LE+KCPY  G  
Sbjct: 158 SAIERYKRIMGCEVGTMGFAIHS-NEEFHWLGASPDGI----LDCFGILEVKCPYNKGKT 212

Query: 196 NKAFPWSRIPLYCIPQAQGLMEILGTDWMDFYVWTLNGSSLFRLYRDAEYWDVMKTALSD 255
               PW ++P Y +PQ QG MEI+  +W++ Y WT NGS++FR+ RD  YW ++   L +
Sbjct: 213 ETVLPWKKVPYYYMPQLQGQMEIMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHDVLRE 272

Query: 256 FWLNHVLPARELYSSNVITDPLYQLRSLRPAPRHELCSYIVYKSKHIVDNSQLLMREFNG 315
           FW   V+PARE     ++     +++   P   H+     + KS ++   S+L+ RE   
Sbjct: 273 FWWESVIPAREAL---LLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLAAESKLVCREIAD 329

Query: 316 KLQ 318
            ++
Sbjct: 330 HVE 332


>AT1G67660.2 | Symbols:  | Restriction endonuclease, type II-like
           superfamily protein | chr1:25364152-25365069 FORWARD
           LENGTH=305
          Length = 305

 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 81  KNWQELRKYKLTASTFAGAIGFWP-RRRVQLWLEKI----GAIEPFHGNLATCWSNIKEE 135
           + W  LRK KLT STF+ A+GFW   RR +LW EK+      +       A  W    E 
Sbjct: 69  EEWFALRKDKLTTSTFSTALGFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMES 128

Query: 136 EALERYKLITGNTVLFPEFQVYSVKPEDDWLAASPDGVVVYELPSSGVLEIKCPYFNGDK 195
            A+ERYK I G  V    F ++S   E  WL ASPDG+    L   G+LE+KCPY  G  
Sbjct: 129 SAIERYKRIMGCEVGTMGFAIHS-NEEFHWLGASPDGI----LDCFGILEVKCPYNKGKT 183

Query: 196 NKAFPWSRIPLYCIPQAQGLMEILGTDWMDFYVWTLNGSSLFRLYRDAEYWDVMKTALSD 255
               PW ++P Y +PQ QG MEI+  +W++ Y WT NGS++FR+ RD  YW ++   L +
Sbjct: 184 ETVLPWKKVPYYYMPQLQGQMEIMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHDVLRE 243

Query: 256 FWLNHVLPARELYSSNVITDPLYQLRSLRPAPRHELCSYIVYKSKHIVDNSQLLMREFNG 315
           FW   V+PARE     ++     +++   P   H+     + KS ++   S+L+ RE   
Sbjct: 244 FWWESVIPAREAL---LLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLAAESKLVCREIAD 300

Query: 316 KLQ 318
            ++
Sbjct: 301 HVE 303