Miyakogusa Predicted Gene

Lj6g3v1417010.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1417010.1 tr|Q9SY32|Q9SY32_ARATH F17F8.27 OS=Arabidopsis
thaliana PE=4 SV=1,48.6,5e-18,seg,NULL; coiled-coil,NULL,CUFF.59472.1
         (665 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20160.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN:...    88   2e-17
AT1G30860.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    87   4e-17
AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein | ...    83   5e-16
AT5G44690.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    50   5e-06

>AT4G20160.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN: 6
           plant structures; EXPRESSED DURING: L mature pollen
           stage, M germinated pollen stage, 4 anthesis, petal
           differentiation and expansion stage; BEST Arabidopsis
           thaliana protein match is: RING/U-box superfamily
           protein (TAIR:AT1G30860.1); Has 64917 Blast hits to
           39974 proteins in 1949 species: Archae - 279; Bacteria -
           7425; Metazoa - 26604; Fungi - 5788; Plants - 3193;
           Viruses - 275; Other Eukaryotes - 21353 (source: NCBI
           BLink). | chr4:10890983-10894971 FORWARD LENGTH=1188
          Length = 1188

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 17/176 (9%)

Query: 327 VANIIKRLQTQNDD--NDHEGCGGTSSVADSPSAAENSEQRVFPQVTCTPRVRGRKAFDD 384
           V +II++L   ++   N+  G  G     D+    + +E R FPQV C+PR+RGR+A  D
Sbjct: 218 VMDIIRKLSNDSETITNNDNGSSGN----DNSKEVQTTEARSFPQVACSPRIRGRQALAD 273

Query: 385 LLMKLEQDRHGELKNLSERGAVSKFTQRGRIQASXXXXXXXXXXXXNEPYRLKSTA--SE 442
           LL+++ +DR  +L  L ER  VSKFT RGRIQ++               +R KST+  S+
Sbjct: 274 LLVQMTRDREKDLACLRERHCVSKFTNRGRIQSTLRIRCYERCLAIQGRHRSKSTSAGSD 333

Query: 443 VNRQPAQGSAIMQ-LREKFSNGAEQRKTVQAEVASP-------KSPHKEIANKTTQ 490
            NR  ++GS +M  LREK+   +E  +T  +   +        K PHK    K  Q
Sbjct: 334 SNR-SSRGSGVMHLLREKYKANSENIETGASTSHASTRGRIMDKDPHKATEKKVLQ 388


>AT1G30860.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:10986696-10989246 REVERSE LENGTH=730
          Length = 730

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 1/99 (1%)

Query: 362 SEQRVFPQVTCTPRVRGRKAFDDLLMKLEQDRHGELKNLSERGAVSKFTQRGRIQASXXX 421
           SE+  FP V+ +P++RGR+AF D LM++E+DRH EL +L ER AVS+FTQRGR+Q+    
Sbjct: 197 SEKSNFPVVSFSPKIRGRQAFTDFLMQMERDRHRELDSLFERNAVSRFTQRGRLQSMLRL 256

Query: 422 XXXXXXXXXNEPYRLKSTASEVNRQPAQGSAIMQLREKF 460
                     +  R  +  + +NR  + GSA++ LREKF
Sbjct: 257 RNLNRCLVIQDRNRSNAKTTGLNRIES-GSAVLHLREKF 294


>AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein |
           chr2:14728375-14730816 REVERSE LENGTH=652
          Length = 652

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 9/136 (6%)

Query: 327 VANIIKRLQT-QNDDNDHEGCGGTSSVADSPSAAENSEQRVFPQVTCTPRVRGRKAFDDL 385
           V++II+RL   Q     + G      +  +P+  ++S    F  VTC+PR+RGR+A+ DL
Sbjct: 157 VSDIIRRLSNEQKLTASNNGGAVDMPIVKTPTLEKSS----FQVVTCSPRIRGRQAYSDL 212

Query: 386 LMKLEQDRHGELKNLSERGAVSKFTQRGRIQASXXXXXXXXXXXXNEPYRLKSTASEVNR 445
           L+ LE++RH EL++L  R AVS+F QRGR+Q+              + +R  +T S++NR
Sbjct: 213 LVHLERERHRELESLLGRNAVSRFPQRGRLQSMLRLRSLKRGLAIQDRHR-GTTKSDLNR 271

Query: 446 -QPAQGSAIMQLREKF 460
            QP+  S I+ LREK 
Sbjct: 272 FQPS--STILHLREKL 285


>AT5G44690.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G20160.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:18029707-18032293 REVERSE LENGTH=662
          Length = 662

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 355 SPSAAENSEQRVFPQV-TC-TPRVRGRKAFDDLLMKLEQDRHGELKNLSERGAVSKFTQR 412
           S S   + E R F ++ +C TPR+RGR+A +D+   + +DR  EL+ L  R AVSKF+ R
Sbjct: 156 SNSYENDGEGRCFLELASCSTPRIRGRQASEDVCKMILRDRENELELLGGRYAVSKFSPR 215

Query: 413 --GRIQASXXXXXXXXXXXXNEPYRLKSTASEVNR 445
             GR+Q               E YR KS  +  +R
Sbjct: 216 GCGRLQYMLMIRSLERCIVIQERYRSKSDVNRFSR 250