Miyakogusa Predicted Gene

Lj6g3v1415950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1415950.1 tr|Q8H3W6|Q8H3W6_ORYSJ WD-40 repeat protein-like
OS=Oryza sativa subsp. japonica GN=P0585H11.112
PE=,37.34,7e-19,seg,NULL,CUFF.59463.1
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17370.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    91   8e-19

>AT5G17370.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:5721801-5724719 REVERSE LENGTH=529
          Length = 529

 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 97/218 (44%), Gaps = 15/218 (6%)

Query: 5   PELPGFYYDPEKNRYFXXXXXXXXXXXXXXXXXXXXDLNXXXXXXXXXXXXXXXXYCWKV 64
           PELPGFYYD EKNRYF                      +                Y  + 
Sbjct: 22  PELPGFYYDEEKNRYFPIKGPIPGAKSSS---------SSRTKQKPEPKPEQETNYQKRT 72

Query: 65  RNRTTSNLLQGRELGGHHVSASH---CFSEEFRKMQASQPAVWKYQGTDKIGISALEHMK 121
           + +    L+  REL G+ +S +     F +E +K QAS P VW+Y  T+ IG +AL+  +
Sbjct: 73  KLKAL-KLVYSRELNGNVISVNKKMSNFRDEIQKTQASYPVVWRYGSTEDIGDTALKQFQ 131

Query: 122 VDVKTAEGRVETDVLLTGSINGTLSFCEVGRVGQNFDSGVTWMPDHVKNYVGGKTDERYE 181
           VDV+T  G    ++L+ GS  G LS   V +  Q +D  +   P  V       T+ER E
Sbjct: 132 VDVQTPVGLTRKNILVAGSAGGCLSILRVSKDRQVYDGVIECDPVSVLPCKENDTEER-E 190

Query: 182 VPGPVSRPNGASLIMSSRVSCIRLGSKCSSTAVNDDPI 219
            P  + RP    L+  S +S I L  + S  + N  P+
Sbjct: 191 APEHILRPTQPCLVALSSISSIELIGR-SDASENSHPV 227