Miyakogusa Predicted Gene

Lj6g3v1412720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1412720.1 tr|G8A1U4|G8A1U4_MEDTR Polygalacturonase QRT3
OS=Medicago truncatula GN=MTR_126s0003 PE=4 SV=1,47.2,2e-19,Pectin
lyase-like,Pectin lyase fold/virulence factor; no description,Pectin
lyase fold,gene.g66188.t1.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20040.1 | Symbols:  | Pectin lyase-like superfamily protein ...    85   3e-17
AT4G20050.2 | Symbols: QRT3 | Pectin lyase-like superfamily prot...    75   3e-14
AT4G20050.1 | Symbols: QRT3 | Pectin lyase-like superfamily prot...    75   3e-14

>AT4G20040.1 | Symbols:  | Pectin lyase-like superfamily protein |
           chr4:10847348-10848963 REVERSE LENGTH=483
          Length = 483

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 57/79 (72%), Gaps = 4/79 (5%)

Query: 50  GRVVNPIGYGADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGN 109
           G+V+ PIGYGADPTG  DSSDAIL+A+ + F +       E++  V DLGG+VIDLQGG+
Sbjct: 66  GKVIYPIGYGADPTGGQDSSDAILEALTDAFQLQTG---LEMLPRVADLGGLVIDLQGGS 122

Query: 110 YKISKPITFPSY-VGNVVV 127
           Y I KP+ FPS   GN+VV
Sbjct: 123 YMIGKPLRFPSSGGGNLVV 141


>AT4G20050.2 | Symbols: QRT3 | Pectin lyase-like superfamily protein
           | chr4:10849911-10852090 REVERSE LENGTH=481
          Length = 481

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 4/79 (5%)

Query: 51  RVVNPIGYGADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNY 110
           RV   I YGADPTG  DS+DAILKA+ E F          L+ G+ DLGG  IDLQGG+Y
Sbjct: 74  RVYQVISYGADPTGKLDSTDAILKAMEEAF---DGPNHGVLMQGINDLGGARIDLQGGSY 130

Query: 111 KISKPITFPSY-VGNVVVS 128
            IS+P+ FPS   GN+++S
Sbjct: 131 LISRPLRFPSAGAGNLLIS 149


>AT4G20050.1 | Symbols: QRT3 | Pectin lyase-like superfamily protein
           | chr4:10849911-10852090 REVERSE LENGTH=481
          Length = 481

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 4/79 (5%)

Query: 51  RVVNPIGYGADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNY 110
           RV   I YGADPTG  DS+DAILKA+ E F          L+ G+ DLGG  IDLQGG+Y
Sbjct: 74  RVYQVISYGADPTGKLDSTDAILKAMEEAF---DGPNHGVLMQGINDLGGARIDLQGGSY 130

Query: 111 KISKPITFPSY-VGNVVVS 128
            IS+P+ FPS   GN+++S
Sbjct: 131 LISRPLRFPSAGAGNLLIS 149