Miyakogusa Predicted Gene

Lj6g3v1412710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1412710.1 tr|B2KZH0|B2KZH0_PICAB Quartet 3 (Fragment)
OS=Picea abies GN=QRT3 PE=2
SV=1,64.44,0.000000002,seg,NULL,gene.g66187.t1.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20040.1 | Symbols:  | Pectin lyase-like superfamily protein ...   214   3e-56
AT4G20050.2 | Symbols: QRT3 | Pectin lyase-like superfamily prot...   172   2e-43
AT4G20050.1 | Symbols: QRT3 | Pectin lyase-like superfamily prot...   172   2e-43

>AT4G20040.1 | Symbols:  | Pectin lyase-like superfamily protein |
           chr4:10847348-10848963 REVERSE LENGTH=483
          Length = 483

 Score =  214 bits (545), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 127/157 (80%), Gaps = 5/157 (3%)

Query: 1   MITGVHCYNKATAFGGIGILVKLAGYSQTRIDNCYMDYTGIVMEDPVQVHVTNGFFLGGA 60
           M+TGVHCYNKAT FGGIGILVK      TRIDNCY+DYTGIV+EDPV VHVTN  FLG A
Sbjct: 296 MVTGVHCYNKATWFGGIGILVK---SHLTRIDNCYLDYTGIVIEDPVHVHVTNALFLGDA 352

Query: 61  NIVLKSIKGKVSGLNIVDNMFSGKW-NQVPIVALDGQFSSIDQVVIDRNNVYGSMSLRST 119
           NIVL+S+ GK+SG+NIV+NMFSG   N  PIV L+G+F  I+QVVID+NN  G M L+ST
Sbjct: 353 NIVLRSVHGKISGVNIVNNMFSGTAKNNFPIVKLEGEFHDINQVVIDQNNAEG-MMLKST 411

Query: 120 VSKLTVAGNGSKWVADFSNVLVFPNRISHFQYSFYSQ 156
             K  V+ NG++W+ADFS VLVFPNRI+H+Q+SF++Q
Sbjct: 412 TGKAMVSANGTRWIADFSPVLVFPNRINHYQHSFFAQ 448


>AT4G20050.2 | Symbols: QRT3 | Pectin lyase-like superfamily protein
           | chr4:10849911-10852090 REVERSE LENGTH=481
          Length = 481

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 117/167 (70%), Gaps = 4/167 (2%)

Query: 1   MITGVHCYNKATAFGGIGILVKLAGYSQTRIDNCYMDYTGIVMEDPVQVHVTNGFFLGGA 60
           +++GVHCYNKAT FGG GI ++L G +Q RI N Y+DYTGIV EDPVQ+ ++  FFLG A
Sbjct: 286 LLSGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDA 345

Query: 61  NIVLKSIKGKVSGLNIVDNMFSGKWNQVPIVALDGQ---FSSIDQVVIDRNNVYGSMSLR 117
            I+LKSI G + G++IVDNMFSG  + V IV LD +   F  + QVV+DRN+V G M  +
Sbjct: 346 FILLKSIAGYIRGVSIVDNMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNG-MVEK 404

Query: 118 STVSKLTVAGNGSKWVADFSNVLVFPNRISHFQYSFYSQGEPKFLAH 164
           STV++ +V GNG+ W  DF+ VL+FP+ I+H QY+  +     F  H
Sbjct: 405 STVARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLH 451


>AT4G20050.1 | Symbols: QRT3 | Pectin lyase-like superfamily protein
           | chr4:10849911-10852090 REVERSE LENGTH=481
          Length = 481

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 117/167 (70%), Gaps = 4/167 (2%)

Query: 1   MITGVHCYNKATAFGGIGILVKLAGYSQTRIDNCYMDYTGIVMEDPVQVHVTNGFFLGGA 60
           +++GVHCYNKAT FGG GI ++L G +Q RI N Y+DYTGIV EDPVQ+ ++  FFLG A
Sbjct: 286 LLSGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDA 345

Query: 61  NIVLKSIKGKVSGLNIVDNMFSGKWNQVPIVALDGQ---FSSIDQVVIDRNNVYGSMSLR 117
            I+LKSI G + G++IVDNMFSG  + V IV LD +   F  + QVV+DRN+V G M  +
Sbjct: 346 FILLKSIAGYIRGVSIVDNMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNG-MVEK 404

Query: 118 STVSKLTVAGNGSKWVADFSNVLVFPNRISHFQYSFYSQGEPKFLAH 164
           STV++ +V GNG+ W  DF+ VL+FP+ I+H QY+  +     F  H
Sbjct: 405 STVARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLH 451