Miyakogusa Predicted Gene

Lj6g3v1392600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1392600.1 tr|A4S0M9|A4S0M9_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_24859,23.78,2e-18,seg,NULL,CUFF.59532.1
         (468 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 | ch...   513   e-146
AT3G06960.2 | Symbols: PDE320 | pigment defective 320 | chr3:219...   318   3e-87
AT2G44640.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   212   3e-55

>AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 |
           chr3:2194379-2196504 REVERSE LENGTH=479
          Length = 479

 Score =  513 bits (1322), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/484 (54%), Positives = 337/484 (69%), Gaps = 21/484 (4%)

Query: 1   MRKLRWVMDGGAFWDLDVSTPKTLDGLACPVPEDPLPLGLSRGTRLSRPKQLHFMHTFMH 60
           M ++RWV +G   WDLD+STP TL+G A  VP+DPLPLGLSRGTRLSRPKQ+ F H FM 
Sbjct: 1   MNRMRWVGEGD-IWDLDMSTPVTLEGTARAVPDDPLPLGLSRGTRLSRPKQVEFFHRFMA 59

Query: 61  ALLLPSYA--KPHG-------LTLQRVLSLPFSENWIVYLLGQFNLQRFVSSVKSSKETP 111
           + L+PS++  +P+         +LQRVL+LPFS NW+V LLGQF++QRFV+ +  +K   
Sbjct: 60  SPLIPSFSPIRPNTGDGGGGGFSLQRVLTLPFSNNWLVSLLGQFDVQRFVTEIDKTKAFG 119

Query: 112 EGFSSW----LKNIGKHLQQKSLYALGFCSEFQLTPNDTLLFGLDGY--DYADKPRGKAV 165
            G SS     L  IGKHL+ KSLYALGFCSEF L+P+DTLL   D Y  D    PR KA+
Sbjct: 120 RGSSSTVASRLNTIGKHLKDKSLYALGFCSEFLLSPDDTLLLSYDAYKGDLDKNPRAKAI 179

Query: 166 LHHEFPHHDLKVEAVYPGLFVDKTGNYWDVPFSMAIDLASVTTCDSSMGYHLSAQYTSGA 225
            +HEFP H+L  EAV+PGLFVDK G YWDVP SMAIDLAS+   +S   YHL   + SG+
Sbjct: 180 FNHEFPLHNLTAEAVWPGLFVDKHGEYWDVPLSMAIDLASLP-AESGPSYHLCLHHNSGS 238

Query: 226 PEQFESNQNQTVRVPP-TLLPGLAFKSVFSYRMNTDIWRSEGRKLKLVQPYDIFLSSPHV 284
           P++  S+   T+ VPP +LLPGL+ KS  SYR N D+WR    KL+  +PYD+FLSSPHV
Sbjct: 239 PKKLHSD---TMEVPPPSLLPGLSLKSAVSYRTNMDLWRGTTPKLETCKPYDVFLSSPHV 295

Query: 285 XXXXXXXXXXXXXFGDNSARAQVDDDRQGSPGFFIQAAGIKSSFVADMFASITLTAQHGN 344
                        FG+NS R++ ++D +G  GF +    + S F+AD     +LTAQ+GN
Sbjct: 296 AVSGIIGSVMTAAFGENSIRSKFENDSEGVGGFSLHFPSVNSGFMADALGRASLTAQYGN 355

Query: 345 FQRLFLDLTRFQARLDFPRGSKFLSGATNLAQDLLNSQKPNMDDVQAICPNATLSLQQQI 404
           FQ+ F DLTRF ARLDFP G +FL+GAT++AQDLLNS++P+++  Q ICP   +SLQQQI
Sbjct: 356 FQKFFFDLTRFHARLDFPHGLRFLTGATSVAQDLLNSRQPSLEAFQKICPEVLVSLQQQI 415

Query: 405 VGPVSFRVDSGVTIDVKNPDWLVHAQEPVFAVEYALEVLGSAKAVAWYCPKRQEFMAELR 464
           VGP SF+V+SG+ ID++N    V   + VFA+EYAL+VL SAKAV  Y PK+ EFM ELR
Sbjct: 416 VGPFSFKVESGIEIDLRNGANPVTVDKTVFAIEYALQVLLSAKAVVSYSPKQNEFMVELR 475

Query: 465 FYET 468
           F+ET
Sbjct: 476 FFET 479


>AT3G06960.2 | Symbols: PDE320 | pigment defective 320 |
           chr3:2195216-2196504 REVERSE LENGTH=341
          Length = 341

 Score =  318 bits (816), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 166/299 (55%), Positives = 208/299 (69%), Gaps = 19/299 (6%)

Query: 1   MRKLRWVMDGGAFWDLDVSTPKTLDGLACPVPEDPLPLGLSRGTRLSRPKQLHFMHTFMH 60
           M ++RWV +G   WDLD+STP TL+G A  VP+DPLPLGLSRGTRLSRPKQ+ F H FM 
Sbjct: 1   MNRMRWVGEGD-IWDLDMSTPVTLEGTARAVPDDPLPLGLSRGTRLSRPKQVEFFHRFMA 59

Query: 61  ALLLPSYA--KPHG-------LTLQRVLSLPFSENWIVYLLGQFNLQRFVSSVKSSKETP 111
           + L+PS++  +P+         +LQRVL+LPFS NW+V LLGQF++QRFV+ +  +K   
Sbjct: 60  SPLIPSFSPIRPNTGDGGGGGFSLQRVLTLPFSNNWLVSLLGQFDVQRFVTEIDKTKAFG 119

Query: 112 EGFSSW----LKNIGKHLQQKSLYALGFCSEFQLTPNDTLLFGLDGY--DYADKPRGKAV 165
            G SS     L  IGKHL+ KSLYALGFCSEF L+P+DTLL   D Y  D    PR KA+
Sbjct: 120 RGSSSTVASRLNTIGKHLKDKSLYALGFCSEFLLSPDDTLLLSYDAYKGDLDKNPRAKAI 179

Query: 166 LHHEFPHHDLKVEAVYPGLFVDKTGNYWDVPFSMAIDLASVTTCDSSMGYHLSAQYTSGA 225
            +HEFP H+L  EAV+PGLFVDK G YWDVP SMAIDLAS+   +S   YHL   + SG+
Sbjct: 180 FNHEFPLHNLTAEAVWPGLFVDKHGEYWDVPLSMAIDLASL-PAESGPSYHLCLHHNSGS 238

Query: 226 PEQFESNQNQTVRVPPTLLPGLAFKSVFSYRMNTDIWRSEGRKLKLVQPYDIFLSSPHV 284
           P++  S+  +    PP+LLPGL+ KS  SYR N D+WR    KL+  +PYD+FLSSPHV
Sbjct: 239 PKKLHSDTMEV--PPPSLLPGLSLKSAVSYRTNMDLWRGTTPKLETCKPYDVFLSSPHV 295


>AT2G44640.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           mitochondrion, chloroplast, plasma membrane, plastid,
           chloroplast envelope; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF3769
           (InterPro:IPR022244); BEST Arabidopsis thaliana protein
           match is: pigment defective 320 (TAIR:AT3G06960.1); Has
           49 Blast hits to 48 proteins in 15 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr2:18417286-18419063 FORWARD LENGTH=451
          Length = 451

 Score =  212 bits (540), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 231/469 (49%), Gaps = 44/469 (9%)

Query: 13  FWDLDVSTPKTLDGLACPVPEDPLPLGLSRGTRLSRPKQLHFMHTFMHALLLPSYA---- 68
           FWD +VS+P+TL+G A  VP +P PL  +R +R  R +QL  +       ++PS A    
Sbjct: 12  FWDQNVSSPQTLEGTARSVPGEPFPLDGARASRSHRIQQLSLLREGFPLGIIPSLAPASD 71

Query: 69  -KPHGLTLQRVLSLPFSENWIVYLLGQFNLQRFVSSVKSSKETPEGFS-SWLKNIGKHLQ 126
            +    +L  +L  P S NW + L+GQF  ++  + +K+     E +    +K+  KH+ 
Sbjct: 72  KRLGSFSLNSLLLSPSSNNWWLGLVGQFKPKKLFADIKADISNAEEWDLQVVKDTAKHIV 131

Query: 127 QKSLYALGFCSEFQLTPNDTLLFGLDGYDYADKPRGKAVLHHEFPHHDLKVEAVYPGLFV 186
            KSLY++G  ++  L  + +LL   +     +  R K +L H    HDL VEA +P LF+
Sbjct: 132 DKSLYSIGLWTQIALGTSSSLLLSTERLGDKNGLRNKLMLVHPLEKHDLTVEAAWPDLFL 191

Query: 187 DKTGNYWDVPFSMAIDLASVTTCDSSMGYHLSAQYTSGAPEQFESNQNQTVRVPPT-LLP 245
           D  G +WDVP S+ +D++S+   +S + Y      + G P+   +   ++    PT L+P
Sbjct: 192 DNKGRFWDVPESLNVDVSSLVP-ESGVRYRFGLHKSRGNPQPVNAAGVESGSDAPTSLMP 250

Query: 246 GLAFKSVFSYRMNTDIWR-------SEGRKLKLVQPYDIFLSSPHVXXXXXXXXXXXXXF 298
           GL  K+  SY++N D+WR       +E     +  PYD+ L  PH               
Sbjct: 251 GLCAKAAVSYKVNRDLWRPQEKEGNTEEEDKPVFLPYDLRLKEPHAAISGIVGSSLAAWI 310

Query: 299 GDNSARAQVDDDRQGSPGFFIQAAGIKSSFVADMFASITLTAQHGNFQRLFLDLTRFQAR 358
              + R  + + ++ SP              AD+F S   T Q G F +L+ DLTR  AR
Sbjct: 311 ---TGRGMLVNGKKRSP------------ISADVFGSACYTFQKGRFSKLYGDLTRVDAR 355

Query: 359 LDFPRGSKFLSGATNLAQDLLNSQKPNMDDVQAICPNATLSLQQQIVGPVSFRVDSGVTI 418
           +D P        A  LA+ L ++   N DD     P   L  QQQ+ GP+ F+VDS   +
Sbjct: 356 VDLP-------SAFALAKKLFHASSNNSDDT-LWSPRLNLIFQQQVAGPIVFKVDSQFQV 407

Query: 419 DVKNPDWLVHAQEPVFAVEYALEVLGSAKAVAWYCPKRQEFMAELRFYE 467
                      ++ ++++ Y+L +L S K VAWY PKR+E M ELR +E
Sbjct: 408 GA------ARMEDVIYSLNYSLRLLESGKIVAWYSPKRKEGMIELRVFE 450