Miyakogusa Predicted Gene

Lj6g3v1358590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1358590.1 Non Chatacterized Hit- tr|D7L1Z2|D7L1Z2_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,40.12,3e-18,seg,NULL,CUFF.59390.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18969.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   104   3e-23
AT4G30180.1 | Symbols:  | sequence-specific DNA binding transcri...    88   4e-18

>AT2G18969.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: sequence-specific DNA binding transcription
           factors;transcription regulators (TAIR:AT4G30180.1); Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr2:8229047-8229574
           REVERSE LENGTH=175
          Length = 175

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 18/181 (9%)

Query: 7   KRRRVYSVEPNKVVEAAFARNYMNYLVPALMKI----KEINTCGGDIQNVVKHEVDMAMV 62
           KR+RV+S++PNK  +A FAR Y+++LVPAL KI        T    ++  VKHEVDMA  
Sbjct: 8   KRKRVFSLQPNKNPKAVFARRYVSHLVPALKKINMNKSSSKTNKQSLEQTVKHEVDMAFA 67

Query: 63  SSAQGFAWSNSLKLKLQNQREDIGVSVNGNTSIPQSPSSESQAKILVSKSKNNDMPTMKR 122
            SAQ FAWS  L+ KL +   D  +S + + S     SS+ Q      K +++D      
Sbjct: 68  LSAQEFAWSRFLQQKLLSSPYDDPISTSSSPSEILERSSKRQGG---EKHQDSDEEEEGG 124

Query: 123 DLXXXXXXXXXXNGQLKSLKRLIPGGENMCNDEMVVELESYIGCLQMQVNILQYLA-DQT 181
           ++            +LK L++L+PGGE M  +E++ E+ SYI CL++Q+ +L+ +  D T
Sbjct: 125 EI----------KKRLKELQKLLPGGEEMNMEEILSEIGSYIVCLELQMIVLKSIVQDNT 174

Query: 182 S 182
           S
Sbjct: 175 S 175


>AT4G30180.1 | Symbols:  | sequence-specific DNA binding
           transcription factors;transcription regulators |
           chr4:14769028-14769504 FORWARD LENGTH=158
          Length = 158

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 25/176 (14%)

Query: 7   KRRRVYSVEPNKVVEAAFARNYMNYLVPALMKIKEINTCGGDIQNVVKHEVDMAMVSSAQ 66
           +++RV+S+EPNK   A F R Y ++LVPAL   K++N      +  VKHEVDMA+  SAQ
Sbjct: 8   RKKRVFSLEPNKNPSAVFTRKYTSHLVPAL---KKLNMNKNSSKQTVKHEVDMALALSAQ 64

Query: 67  GFAWSNSLKLKLQNQREDIGVSVNGNTSIPQSPSSESQAKILVSKSKNNDMPTMKRDLXX 126
            FAWS  L  KL +       + + +  I          +IL            +R    
Sbjct: 65  EFAWSRFLLQKLSSSSNPTTTTSSSSDGI----------RIL------------ERPDKE 102

Query: 127 XXXXXXXXNGQLKSLKRLIPGGENMCNDEMVVELESYIGCLQMQVNILQYLADQTS 182
                     +L+ LK+L+PGGE M  +EM+ E+ +YI CL++Q   L+ +   ++
Sbjct: 103 GGNEEGGIEERLRELKKLLPGGEEMNVEEMLSEIGNYIKCLELQTIALKSIVQDST 158