Miyakogusa Predicted Gene

Lj6g3v1334380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1334380.1 tr|Q5Z846|Q5Z846_ORYSJ Os06g0700300 protein
OS=Oryza sativa subsp. japonica GN=P0468G03.21 PE=2
SV=1,42.86,0.000000000000006,DUF4228,Protein of unknown function
DUF4228; seg,NULL,CUFF.59373.1
         (190 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66580.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    49   2e-06

>AT5G66580.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: N-terminal
           protein myristoylation; LOCATED IN: cellular_component
           unknown; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT3G50800.1); Has 1807 Blast hits
           to 1807 proteins in 277 species: Archae - 0; Bacteria -
           0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
           0; Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:26572724-26573194 FORWARD LENGTH=156
          Length = 156

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 20  RLVHLSGYVEDFEQPISVSQVTGNSGNPTSHFVCTSVQL-LSSCSKSLKGDTQLQPGNVY 78
           +L+ L G +++F  P+ V Q+     NPTS FVC S ++       ++ G+ +L+ G +Y
Sbjct: 16  KLILLDGTLQEFSSPVKVWQIL--QKNPTS-FVCNSDEMDFDDAVSAVAGNEELRSGQLY 72

Query: 79  FMLPYSILQPDVSPVDLASLAKRLTS 104
           F+LP + L   +   ++A+LA + +S
Sbjct: 73  FVLPLTWLNHPLRAEEMAALAVKASS 98