Miyakogusa Predicted Gene

Lj6g3v1333190.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1333190.3 Non Chatacterized Hit- tr|J3N9K8|J3N9K8_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB11G2,34.71,4e-19,DNA
BINDING / DNA-DIRECTED RNA POLYMERASE,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; RNA_pol_I_A49,RNA p,CUFF.59368.3
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13940.1 | Symbols:  | DNA binding;DNA-directed RNA polymeras...   131   2e-31

>AT3G13940.1 | Symbols:  | DNA binding;DNA-directed RNA polymerases
           | chr3:4600647-4602412 REVERSE LENGTH=442
          Length = 442

 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 98/165 (59%), Gaps = 3/165 (1%)

Query: 1   MLQLGEEADFSAYPTFICNRIARLKQIKDESEKKKISCIYSYINHLIKFKDQHTLDGVSS 60
           +LQ   EA   AYP F+ NR+ RL+ IKD+ +K+ +    + + HL+KFKD+++++G  S
Sbjct: 278 LLQQETEAATEAYPVFVRNRLYRLRDIKDDMKKQTVCGAATLLTHLVKFKDRNSMNGYDS 337

Query: 61  AKSHKIPPILRHKFSSMFGVFEXXXXXXXXXXXXICYVLVLTLFCDEFQTDYTDISKDLR 120
           AK HK+P I R KF+SMF   E            I YVLVL+L  D F TD  DI+KDLR
Sbjct: 338 AKDHKMPDIFRQKFNSMFKDSESDRIPVDKINLLISYVLVLSLHVDNFMTDPEDIAKDLR 397

Query: 121 KGESLVRDCYNKLGCKIPPQKK--ICTLPVPLKFPPDSNQRKRKR 163
                +R  + +LGCK   Q    + TLP PL F P+ N+R+R R
Sbjct: 398 ISTVELRKHFLQLGCKFLKQNSTTVATLPTPLNF-PEVNRRRRAR 441