Miyakogusa Predicted Gene

Lj6g3v1333110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1333110.1 Non Chatacterized Hit- tr|B8LLC4|B8LLC4_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,39.26,3e-16,seg,NULL,CUFF.59355.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29960.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    91   6e-19

>AT4G29960.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:14660753-14662274 REVERSE LENGTH=291
          Length = 291

 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 37  PGGYYQMFPAGIYPALVPGLAPPQIDEHVNRGAGIYAVPVNPYDRNVTGFPYNTLIPLTY 96
           P G   M+P   YP LVPG  P Q +E +NRGAGIYAVPV+ +  +V G P N LIPLTY
Sbjct: 42  PNGDSPMYPV-FYPGLVPGSNPVQYEEQMNRGAGIYAVPVHQFGGHVAGLPSNYLIPLTY 100

Query: 97  RTPTRRXXXXXXXXXNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLLLMLKLAAVI 156
             PT R                                         +DL L+LKLAAVI
Sbjct: 101 NVPTTR-PNNEAETGGENQAQAGQGQQQQLPANQRHVVERRFQIAFQLDLFLILKLAAVI 159

Query: 157 FLFNQDGSRQR 167
           FLFNQDGSRQR
Sbjct: 160 FLFNQDGSRQR 170