Miyakogusa Predicted Gene
- Lj6g3v1333100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1333100.1 Non Chatacterized Hit- tr|I1LVM4|I1LVM4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32283
PE,40.14,1e-17,seg,NULL,CUFF.59354.1
(163 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19180.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 79 1e-15
AT1G16840.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 65 1e-11
AT1G16840.3 | Symbols: | unknown protein; BEST Arabidopsis thal... 65 1e-11
AT1G16840.4 | Symbols: | unknown protein; BEST Arabidopsis thal... 65 1e-11
AT1G16840.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 59 1e-09
AT1G78890.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 56 1e-08
>AT2G19180.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G16840.1); Has 64 Blast hits to 64 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr2:8324742-8325575 FORWARD
LENGTH=179
Length = 179
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 24 AVCHRHRSSRATKATLTEIDAEHEV---TLKMFDDLIQRILVKKATPDWLPFLPGYSFWX 80
VC R S + EID+++E LK ++ ++RI+V +TPDWLPF PG SFW
Sbjct: 31 VVCFSRRFSSIPQVIELEIDSKNEAEAAILKKLNEFVRRIIVHNSTPDWLPFAPGSSFWV 90
Query: 81 XX-XXXXXXXXHLAHRFNSSDQPQDALNLESHHGWPDPNYFL---QGNAPAHSGESGVEL 136
+L + + +++L+L S +GWP ++F+ G++ E+ VEL
Sbjct: 91 PPHQITATKIANLVDKVTNPLTEEESLSLSSPYGWPCSSFFIPPPDGSSSTQEEEASVEL 150
Query: 137 NLPEEGTVKVKVITFSDNVANSEDEEG 163
+P ++VK+ + D + + + E+G
Sbjct: 151 KIPGNEMLEVKLAHYPDPIYSFKPEDG 177
>AT1G16840.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:5763111-5763984 REVERSE
LENGTH=161
Length = 161
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 50 LKMFDDLIQRILVKKATPDWLPFLPGYSFWXXXXXXXXXXXHLAHRFNSSDQP---QDAL 106
++ +D + RI V++A PDWLPF+PG S+W +A P +++L
Sbjct: 60 IQKLEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESL 119
Query: 107 NLESHHGWPDPNYFLQGNAPAHSGESGVELNLPEEGTVKVKVITFSDNVANSEDEE 162
+ S HGWP +YFL+G P ++ K T S++ ++SEDEE
Sbjct: 120 STNSSHGWPSSDYFLKGVQPQ---------------LMETKTETTSNSESHSEDEE 160
>AT1G16840.3 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:5763111-5763984 REVERSE
LENGTH=161
Length = 161
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 50 LKMFDDLIQRILVKKATPDWLPFLPGYSFWXXXXXXXXXXXHLAHRFNSSDQP---QDAL 106
++ +D + RI V++A PDWLPF+PG S+W +A P +++L
Sbjct: 60 IQKLEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESL 119
Query: 107 NLESHHGWPDPNYFLQGNAPAHSGESGVELNLPEEGTVKVKVITFSDNVANSEDEE 162
+ S HGWP +YFL+G P ++ K T S++ ++SEDEE
Sbjct: 120 STNSSHGWPSSDYFLKGVQPQ---------------LMETKTETTSNSESHSEDEE 160
>AT1G16840.4 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G78890.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr1:5763111-5763984 REVERSE LENGTH=161
Length = 161
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 50 LKMFDDLIQRILVKKATPDWLPFLPGYSFWXXXXXXXXXXXHLAHRFNSSDQP---QDAL 106
++ +D + RI V++A PDWLPF+PG S+W +A P +++L
Sbjct: 60 IQKLEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESL 119
Query: 107 NLESHHGWPDPNYFLQGNAPAHSGESGVELNLPEEGTVKVKVITFSDNVANSEDEE 162
+ S HGWP +YFL+G P ++ K T S++ ++SEDEE
Sbjct: 120 STNSSHGWPSSDYFLKGVQPQ---------------LMETKTETTSNSESHSEDEE 160
>AT1G16840.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:5763499-5763984 REVERSE
LENGTH=161
Length = 161
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 36 KATLTEIDAE------HEVTLKMFDDLIQRILVKKATPDWLPFLPGYSFWXXXXXXXXXX 89
+ L EID + ++ +D + RI V++A PDWLPF+PG S+W
Sbjct: 40 RGDLYEIDTSAASQSPSDPLIQKLEDAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQS 99
Query: 90 XHLAHRFNSSDQP---QDALNLESHHGWPDPNYFLQGN 124
+A P +++L+ S HGWP +YFL+G+
Sbjct: 100 HGIAQLVVKLANPLTHEESLSTNSSHGWPSSDYFLKGS 137
>AT1G78890.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G16840.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr1:29656623-29657537 FORWARD LENGTH=155
Length = 155
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 37 ATLTEIDAEHEVTLKMFDDLIQRILVKKATPDWLPFLPGYSFWXXXXXXXX-XXXHLAHR 95
+ EID + + +D + RI+V+++ PDWLPF+PG SFW L +
Sbjct: 46 GVIYEIDIAADPLVNKLEDAVHRIMVRRSAPDWLPFVPGASFWVPPPRSQSHGIAKLVEK 105
Query: 96 FNSSDQPQDALNLESHHGWPDPNYFLQGNAP 126
+ ++++++ S GWP +YF++G P
Sbjct: 106 LANPISDEESISISSVRGWPCSDYFIKGVKP 136