Miyakogusa Predicted Gene

Lj6g3v1333010.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1333010.2 Non Chatacterized Hit- tr|K3WGX2|K3WGX2_PYTUL
Uncharacterized protein OS=Pythium ultimum GN=PYU1_G00,26.99,4e-17,no
description,Zinc finger, RING/FYVE/PHD-type; no
description,Homeodomain-like; seg,NULL; PHD,Zinc ,CUFF.59393.2
         (721 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29940.1 | Symbols: PRHA | pathogenesis related homeodomain p...   307   2e-83
AT4G29940.2 | Symbols: PRHA | pathogenesis related homeodomain p...   306   3e-83
AT3G19510.1 | Symbols: HAT3.1 | Homeodomain-like protein with RI...   201   2e-51
AT1G77250.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family ...    51   3e-06

>AT4G29940.1 | Symbols: PRHA | pathogenesis related homeodomain
           protein  A | chr4:14648346-14652710 REVERSE LENGTH=796
          Length = 796

 Score =  307 bits (786), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 128/177 (72%), Positives = 155/177 (87%)

Query: 158 YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 217
           YLLIKMK++QNLIDAY+ EGWKGQSREKIRP+KEL+RA+K+ILNCKL +RDAIRQLD LS
Sbjct: 111 YLLIKMKMQQNLIDAYATEGWKGQSREKIRPDKELERARKEILNCKLGLRDAIRQLDLLS 170

Query: 218 SLGSIEDSVIDPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTE 277
           S+GS+E+ VI  DGS++H+HIFCA C  REAFPDNDIILCDGTCNRAFHQ+CL+PPL+TE
Sbjct: 171 SVGSMEEKVIASDGSIHHDHIFCAECNSREAFPDNDIILCDGTCNRAFHQKCLDPPLETE 230

Query: 278 NIPPGDQGWFCNFCECKIEILEATNAHLGTQISLDSTWQDVFKEEAAIPDGDNALLN 334
           +IPPGDQGWFC FC+CKIEI++  NA +GT   +DS WQD+F EEA++P G  A +N
Sbjct: 231 SIPPGDQGWFCKFCDCKIEIIDTMNAQIGTHFPVDSNWQDIFNEEASLPIGSEATVN 287



 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 143/276 (51%), Gaps = 36/276 (13%)

Query: 411 EIACGRRQRKSVDYKKLYDEMFGKDAPPCELVSEDEDWGTGKRKRREKESDAVNTLMTM- 469
           E  CG RQR++VDY +LY EMFGKDA   E  SEDEDWG   R++R++ESDA +TL+TM 
Sbjct: 366 ETVCGPRQRRTVDYTQLYYEMFGKDAVLQEQGSEDEDWGPNDRRKRKRESDAGSTLVTMC 425

Query: 470 -----HXXXXXXXXXXXXDGIREGSSGKPIRRSCFRIPHDALEKLRQVFAENELPPRSVK 524
                             D +   + G   RR  FR+P +A+EKLRQVFAE ELP ++V+
Sbjct: 426 ESSKKDQDVVETLEQSERDSVSVENKGG--RRRMFRLPRNAVEKLRQVFAETELPSKAVR 483

Query: 525 EGLSKELGIDAAKVSKWFKNARYFALKARKY----QAGGEQLQSFTSKTPKDSRSQNVDK 580
           + L+KEL +D  KV+KWFKN RY AL+ RK     Q G  +  S     P+     N + 
Sbjct: 484 DRLAKELSLDPEKVNKWFKNTRYMALRNRKTESVKQPGDSKTVSGGDSGPEAVMENNTET 543

Query: 581 DELLKSMASKITVTQYQKNGKNVTGREKIKSCSS---PLKKRRLQIPPPLRENGNKGSME 637
           +E+  ++   +        G + T +  +  C++     ++  +  P P  E  ++  +E
Sbjct: 544 NEVQDTLDDTVPP------GFDATNQNILSPCNNNQEEFQQENVSFPSPTDE--SQQYLE 595

Query: 638 VND-------------DVSLKKLLKEKKTRVNFISE 660
            ND             ++SLK  ++E +T    + E
Sbjct: 596 QNDSSFVLVPHEKQSSEISLKTAVEENETESKMMKE 631


>AT4G29940.2 | Symbols: PRHA | pathogenesis related homeodomain
           protein  A | chr4:14648346-14652710 REVERSE LENGTH=769
          Length = 769

 Score =  306 bits (785), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 128/177 (72%), Positives = 155/177 (87%)

Query: 158 YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 217
           YLLIKMK++QNLIDAY+ EGWKGQSREKIRP+KEL+RA+K+ILNCKL +RDAIRQLD LS
Sbjct: 111 YLLIKMKMQQNLIDAYATEGWKGQSREKIRPDKELERARKEILNCKLGLRDAIRQLDLLS 170

Query: 218 SLGSIEDSVIDPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTE 277
           S+GS+E+ VI  DGS++H+HIFCA C  REAFPDNDIILCDGTCNRAFHQ+CL+PPL+TE
Sbjct: 171 SVGSMEEKVIASDGSIHHDHIFCAECNSREAFPDNDIILCDGTCNRAFHQKCLDPPLETE 230

Query: 278 NIPPGDQGWFCNFCECKIEILEATNAHLGTQISLDSTWQDVFKEEAAIPDGDNALLN 334
           +IPPGDQGWFC FC+CKIEI++  NA +GT   +DS WQD+F EEA++P G  A +N
Sbjct: 231 SIPPGDQGWFCKFCDCKIEIIDTMNAQIGTHFPVDSNWQDIFNEEASLPIGSEATVN 287



 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 143/276 (51%), Gaps = 36/276 (13%)

Query: 411 EIACGRRQRKSVDYKKLYDEMFGKDAPPCELVSEDEDWGTGKRKRREKESDAVNTLMTM- 469
           E  CG RQR++VDY +LY EMFGKDA   E  SEDEDWG   R++R++ESDA +TL+TM 
Sbjct: 366 ETVCGPRQRRTVDYTQLYYEMFGKDAVLQEQGSEDEDWGPNDRRKRKRESDAGSTLVTMC 425

Query: 470 -----HXXXXXXXXXXXXDGIREGSSGKPIRRSCFRIPHDALEKLRQVFAENELPPRSVK 524
                             D +   + G   RR  FR+P +A+EKLRQVFAE ELP ++V+
Sbjct: 426 ESSKKDQDVVETLEQSERDSVSVENKGG--RRRMFRLPRNAVEKLRQVFAETELPSKAVR 483

Query: 525 EGLSKELGIDAAKVSKWFKNARYFALKARKY----QAGGEQLQSFTSKTPKDSRSQNVDK 580
           + L+KEL +D  KV+KWFKN RY AL+ RK     Q G  +  S     P+     N + 
Sbjct: 484 DRLAKELSLDPEKVNKWFKNTRYMALRNRKTESVKQPGDSKTVSGGDSGPEAVMENNTET 543

Query: 581 DELLKSMASKITVTQYQKNGKNVTGREKIKSCSS---PLKKRRLQIPPPLRENGNKGSME 637
           +E+  ++   +        G + T +  +  C++     ++  +  P P  E  ++  +E
Sbjct: 544 NEVQDTLDDTVPP------GFDATNQNILSPCNNNQEEFQQENVSFPSPTDE--SQQYLE 595

Query: 638 VND-------------DVSLKKLLKEKKTRVNFISE 660
            ND             ++SLK  ++E +T    + E
Sbjct: 596 QNDSSFVLVPHEKQSSEISLKTAVEENETESKMMKE 631


>AT3G19510.1 | Symbols: HAT3.1 | Homeodomain-like protein with
           RING/FYVE/PHD-type zinc finger domain |
           chr3:6763205-6766049 REVERSE LENGTH=723
          Length = 723

 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 116/167 (69%)

Query: 158 YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 217
           Y L ++  EQ+LIDAYS EGWKG S EKIRPEKEL+RA K+IL  KL IRD  + LD+L 
Sbjct: 186 YFLNRINYEQSLIDAYSLEGWKGSSLEKIRPEKELERATKEILRRKLKIRDLFQHLDTLC 245

Query: 218 SLGSIEDSVIDPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTE 277
           + GS+ +S+ D DG +  E IFCA C  ++   DNDIILCDG C+R FHQ CL PPL  E
Sbjct: 246 AEGSLPESLFDTDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQYCLEPPLRKE 305

Query: 278 NIPPGDQGWFCNFCECKIEILEATNAHLGTQISLDSTWQDVFKEEAA 324
           +IPP D+GW C  C+CK + L+  N  LGT+ S+  +W+ +F E AA
Sbjct: 306 DIPPDDEGWLCPGCDCKDDSLDLLNDSLGTKFSVSDSWEKIFPEAAA 352


>AT1G77250.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family
           protein | chr1:29020444-29022938 REVERSE LENGTH=522
          Length = 522

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 10/68 (14%)

Query: 239 FCANCKLREAFPDND---IILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCNFCECKI 295
           +C++C  R    D D   I+LCDG C+ A+H  C+ PP   E++P G+  WFC    CK 
Sbjct: 399 YCSSCLCRNCLTDKDDDKIVLCDG-CDDAYHIYCMRPPC--ESVPNGE--WFCT--ACKA 451

Query: 296 EILEATNA 303
            IL+   A
Sbjct: 452 AILKVQKA 459