Miyakogusa Predicted Gene

Lj6g3v1331890.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1331890.3 Non Chatacterized Hit- tr|I1JRP0|I1JRP0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57407
PE,46.15,3e-19,KH_1,K Homology domain, type 1; Eukaryotic type
KH-domain (KH-domain type I),NULL; no description,NU,CUFF.59361.3
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr...   144   4e-35
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr...    80   6e-16

>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
           protein | chr4:13197280-13199539 FORWARD LENGTH=495
          Length = 495

 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 124/205 (60%), Gaps = 31/205 (15%)

Query: 5   AKRDSVFVDRESQLDSLLPSSTMSLYGQDASHSNIRSSALSRVGAPIVTTVIQTMQIPLS 64
           A+R+ +F++R+S++DS +  S +S+Y QD   S   S  L+RV +  VT V QTMQIP S
Sbjct: 291 ARREPLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVSQTMQIPFS 350

Query: 65  YAEDIIGIQGKNIDYIRRASGAILIVQESRVPDEIIVEIKGTSSQVQLAQELIQDIINSH 124
           YAEDIIG++G NI YIRR SGA + ++ES  PD+I VEIKGT+SQVQ A++LIQ+ I +H
Sbjct: 351 YAEDIIGVEGANIAYIRRRSGATITIKESPHPDQITVEIKGTTSQVQTAEQLIQEFIINH 410

Query: 125 REPVASS--YGRLDADL----------------------------RSSYSQMSTAPRFSS 154
           +EPV+ S  Y R+D+                               ++YSQ+     ++ 
Sbjct: 411 KEPVSVSGGYARIDSGYVPAYPPQLSNRQEPLPSTYMGTEPVQYRPTAYSQLGGPSTYTP 470

Query: 155 SMSSQPYNTGY-GASGLGDYSTFRL 178
           +++ Q Y + Y  AS +G YS++ L
Sbjct: 471 TLTGQTYGSEYRPASDVGGYSSYNL 495


>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
           protein | chr3:1250762-1254272 REVERSE LENGTH=577
          Length = 577

 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 13/152 (8%)

Query: 23  PSSTMSLYGQDASHSNIRSSALSRVGAPIVTTVIQTMQIPLSYAEDIIGIQGKNIDYIRR 82
           P   +S YG++   +   SSA   V       V Q MQIPLSYA+ +IG  G NI Y RR
Sbjct: 430 PHQGISAYGREPPMNVHVSSAPPMV----AQQVTQQMQIPLSYADAVIGTSGSNISYTRR 485

Query: 83  ASGAILIVQESR-VPDEIIVEIKGTSSQVQLAQELIQDIINSHREPVASSYGRLDADLRS 141
            SGA + +QE+R VP E+ VE+ GT SQVQ A +LIQ+ +     P A +  +  A  + 
Sbjct: 486 LSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFMAEAGAP-APAQPQTVAPEQQ 544

Query: 142 SYSQMSTAPRFSSSMSSQP-------YNTGYG 166
            Y+  +T     ++  + P       Y++GYG
Sbjct: 545 GYNPYATHGSVYAAAPTNPPGGYATDYSSGYG 576