Miyakogusa Predicted Gene
- Lj6g3v1331890.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1331890.1 Non Chatacterized Hit- tr|I1JRP0|I1JRP0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57407 PE,46.15,3e-19,K
homology RNA-binding domain,K Homology domain; KH DOMAIN CONTAINING
RNA BINDING PROTEIN,NULL; no d,CUFF.59361.1
(323 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr... 296 9e-81
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr... 203 1e-52
AT5G15270.1 | Symbols: | RNA-binding KH domain-containing prote... 86 3e-17
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prote... 86 3e-17
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prote... 83 2e-16
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p... 73 2e-13
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p... 73 2e-13
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p... 73 2e-13
AT4G18375.1 | Symbols: | RNA-binding KH domain-containing prote... 70 1e-12
AT1G14170.2 | Symbols: | RNA-binding KH domain-containing prote... 70 2e-12
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prote... 70 2e-12
AT1G14170.1 | Symbols: | RNA-binding KH domain-containing prote... 70 2e-12
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prote... 70 2e-12
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prote... 69 3e-12
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prote... 58 7e-09
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prote... 56 3e-08
AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (lon... 48 7e-06
>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197280-13199539 FORWARD LENGTH=495
Length = 495
Score = 296 bits (759), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 139/216 (64%), Positives = 178/216 (82%), Gaps = 2/216 (0%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
++WPGWPGDCV+R++VPV KVG+IIGRKG+ IKK+CEETRAR++VL+ V TPDRIVLIS
Sbjct: 65 ERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLIS 124
Query: 116 GKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGK 175
GKEE +A +SPAMDAV+RVF+RVSGL + D + A + F S+RLL A+TQAINLIGK
Sbjct: 125 GKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDD-DVQNAGSVFSSVRLLVASTQAINLIGK 183
Query: 176 QGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLV 235
QGS I++I EN+GAS+++LS +E +A DERI++LQGEALK+L ALEA+VGHLR+FLV
Sbjct: 184 QGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRRFLV 243
Query: 236 DHSVLPLFEKTYNTPIAQDRQAETWS-NKSSLHTIC 270
DH+V+PLFEK Y ++Q RQ E + +KSSLHTI
Sbjct: 244 DHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTIS 279
>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250762-1254272 REVERSE LENGTH=577
Length = 577
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 137/199 (68%), Gaps = 5/199 (2%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
K+WPGWPG+ V+R++VP KVGSIIGRKG++IKKI EETRAR+++L+ GT +R V++S
Sbjct: 178 KRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVS 237
Query: 116 GKEELDAALSPAMDAVIRVFKR-VSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIG 174
GKEE +++L P+MD ++RV R V GL DGE A + S RLL A+QA +LIG
Sbjct: 238 GKEEPESSLPPSMDGLLRVHMRIVDGL---DGEAS-QAPPPSKVSTRLLVPASQAGSLIG 293
Query: 175 KQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL 234
KQG T++AI E + ++VL +++ FA D+R++E+ GE V ALE + HLRKFL
Sbjct: 294 KQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFL 353
Query: 235 VDHSVLPLFEKTYNTPIAQ 253
VD S++P FE P Q
Sbjct: 354 VDRSIIPFFENQMQKPTRQ 372
>AT5G15270.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLI-SGKEELDA 122
D V+R + PV K+GS+IGR G+++K++ +TR+++R+ EA G +R++ I S +E +A
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108
Query: 123 ------ALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQ 176
LSPA DA+ R+ RV D + S + +LL + Q ++G+
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVA---DDARSEDSPEGEKQVTAKLLVPSDQIGCILGRG 165
Query: 177 GSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRK 232
G ++ I TGA I+++ + A + +I++ GE L V AL + L +
Sbjct: 166 GQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 12/193 (6%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPA 127
RLV PV + S+IG+ G LI ++ +ETRA ++V + D ++ IS +E + A SP
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPT 346
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
++AV+R+ + S E D + +F + RLL +++ ++GK G+ I + T
Sbjct: 347 IEAVMRLQPKCSDKVERD------SGLVSFTT-RLLVPSSRIGCILGKGGAIITEMRRMT 399
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVDH-----SVLPL 242
A+I++L + + A+ D+ ++++ GE AL + LR + D +++P+
Sbjct: 400 KANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDREGAVSALMPV 459
Query: 243 FEKTYNTPIAQDR 255
P A DR
Sbjct: 460 LPYVPVAPDAGDR 472
>AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLI-SGKEELDA 122
D V+R + PV K+GS+IGR G+++K++ +TR+++R+ EA G +R++ I S +E +A
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108
Query: 123 ------ALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQ 176
LSPA DA+ R+ RV D + S + +LL + Q ++G+
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVA---DDARSEDSPEGEKQVTAKLLVPSDQIGCILGRG 165
Query: 177 GSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRK 232
G ++ I TGA I+++ + A + +I++ GE L V AL + L +
Sbjct: 166 GQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 12/193 (6%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPA 127
RLV PV + S+IG+ G LI ++ +ETRA ++V + D ++ IS +E + A SP
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPT 346
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
++AV+R+ + S E D + +F + RLL +++ ++GK G+ I + T
Sbjct: 347 IEAVMRLQPKCSDKVERD------SGLVSFTT-RLLVPSSRIGCILGKGGAIITEMRRMT 399
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVDH-----SVLPL 242
A+I++L + + A+ D+ ++++ GE AL + LR + D +++P+
Sbjct: 400 KANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDREGAVSALMPV 459
Query: 243 FEKTYNTPIAQDR 255
P A DR
Sbjct: 460 LPYVPVAPDAGDR 472
>AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125612-19128102 FORWARD LENGTH=621
Length = 621
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
+ +RL+ P KVGS+IG+ G +++ + E+ A ++V + + + +RI++IS +E L+
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR 334
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
S A D V+RV R+ EI +AA RLL + L+GK G I +
Sbjct: 335 HSLAQDGVMRVHNRIV-------EIGFEPSAAVVA--RLLVHSPYIGRLLGKGGHLISEM 385
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL 234
TGASI+V + D+ + + + I+++ G V +AL ++ LR+ +
Sbjct: 386 RRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAM 436
>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=857
Length = 857
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 33/185 (17%)
Query: 63 GDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDA 122
G +RL+ P+ VG++IG+ G +IK++ + T A++RV E G+PDR++ I + + +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 123 AL---------------------SPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIR 161
+ S A A+I+VF+ ++ +++D C R
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSD---------TVVC--R 153
Query: 162 LLTAATQAINLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLN 221
LLT ++ A +IGK G + +I + TG I + + + A D+ ++E++G A+ V
Sbjct: 154 LLTESSHAGAVIGKGGQMVGSIRKETGCKISIRI-ENLPICADTDDEMVEVEGNAIAVKK 212
Query: 222 ALEAV 226
AL ++
Sbjct: 213 ALVSI 217
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 113/241 (46%), Gaps = 22/241 (9%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
D V++++ G +IG G++++ + ET A + V +R++ ++ E +
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
SPA A++ +F R+ L A +I + ++ + RL+ +Q ++GK G + +
Sbjct: 511 SSPAQKAIMLIFSRLFEL--ATNKILDNGPRSSITA-RLVVPTSQIGCVLGKGGVIVSEM 567
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVDHSVLPLF 243
+ TGA+I++L ++ + +++++++ GE V A+ + LR + +S+
Sbjct: 568 RKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSL 627
Query: 244 EKTYN---TPIAQDRQAET-------------WSNKSSLHTICRLQQKGILSLWTVKVNW 287
K+ + T DRQ++ +N SSLH R + LS VN+
Sbjct: 628 AKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLH---RRSEDSFLSGSHSSVNY 684
Query: 288 T 288
+
Sbjct: 685 S 685
>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25746742 FORWARD LENGTH=824
Length = 824
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 33/185 (17%)
Query: 63 GDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDA 122
G +RL+ P+ VG++IG+ G +IK++ + T A++RV E G+PDR++ I + + +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 123 AL---------------------SPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIR 161
+ S A A+I+VF+ ++ +++D C R
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSD---------TVVC--R 153
Query: 162 LLTAATQAINLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLN 221
LLT ++ A +IGK G + +I + TG I + + + A D+ ++E++G A+ V
Sbjct: 154 LLTESSHAGAVIGKGGQMVGSIRKETGCKISIRI-ENLPICADTDDEMVEVEGNAIAVKK 212
Query: 222 ALEAV 226
AL ++
Sbjct: 213 ALVSI 217
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 111/241 (46%), Gaps = 22/241 (9%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
D V++++ G +IG G++++ + ET A + V +R++ ++ E +
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
SPA A++ +F R+ L+ G ++ T RL+ +Q ++GK G + +
Sbjct: 511 SSPAQKAIMLIFSRLFELATNKILDNGPRSSIT---ARLVVPTSQIGCVLGKGGVIVSEM 567
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVDHSVLPLF 243
+ TGA+I++L ++ + +++++++ GE V A+ + LR + +S+
Sbjct: 568 RKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSL 627
Query: 244 EKTYN---TPIAQDRQAET-------------WSNKSSLHTICRLQQKGILSLWTVKVNW 287
K+ + T DRQ++ +N SSLH R + LS VN+
Sbjct: 628 AKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLH---RRSEDSFLSGSHSSVNY 684
Query: 288 T 288
+
Sbjct: 685 S 685
>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=866
Length = 866
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 33/185 (17%)
Query: 63 GDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDA 122
G +RL+ P+ VG++IG+ G +IK++ + T A++RV E G+PDR++ I + + +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 123 AL---------------------SPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIR 161
+ S A A+I+VF+ ++ +++D C R
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSD---------TVVC--R 153
Query: 162 LLTAATQAINLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLN 221
LLT ++ A +IGK G + +I + TG I + + + A D+ ++E++G A+ V
Sbjct: 154 LLTESSHAGAVIGKGGQMVGSIRKETGCKISIRI-ENLPICADTDDEMVEVEGNAIAVKK 212
Query: 222 ALEAV 226
AL ++
Sbjct: 213 ALVSI 217
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 113/241 (46%), Gaps = 22/241 (9%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
D V++++ G +IG G++++ + ET A + V +R++ ++ E +
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
SPA A++ +F R+ L A +I + ++ + RL+ +Q ++GK G + +
Sbjct: 511 SSPAQKAIMLIFSRLFEL--ATNKILDNGPRSSITA-RLVVPTSQIGCVLGKGGVIVSEM 567
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVDHSVLPLF 243
+ TGA+I++L ++ + +++++++ GE V A+ + LR + +S+
Sbjct: 568 RKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSL 627
Query: 244 EKTYN---TPIAQDRQAET-------------WSNKSSLHTICRLQQKGILSLWTVKVNW 287
K+ + T DRQ++ +N SSLH R + LS VN+
Sbjct: 628 AKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLH---RRSEDSFLSGSHSSVNY 684
Query: 288 T 288
+
Sbjct: 685 S 685
>AT4G18375.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10154836 FORWARD LENGTH=532
Length = 532
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 16/201 (7%)
Query: 66 VYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLI-----SGKEEL 120
VYR++ P+ VG +IG+ G++I I T+A+++V + G R++ I +EE+
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 121 ------DAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIG 174
+ L A DA+++V+ + S+ + K + RLL +Q+ +LIG
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVA-SDEENNTKTNVDRDDNKECRLLVPFSQSSSLIG 155
Query: 175 KQGSTIRAIHENTGASIKVLS---GDEVQSFATADERIIELQGEALKVLNALEAVVGHLR 231
K G I+ I T AS+KV+S D A + ++ + GE V AL AV +
Sbjct: 156 KAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMY 215
Query: 232 KFLVDHSVLPLFEKTYNTPIA 252
K ++ PL + + P A
Sbjct: 216 KINPRENI-PLDSTSQDVPAA 235
>AT1G14170.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=446
Length = 446
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 12/174 (6%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIV-LISGKEELD- 121
D VYR + PV K GSIIG+ GE+ K+I ET++ +R+ EA G +R+V + S EEL+
Sbjct: 10 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 69
Query: 122 -----AALSPAMDAVIRVFKRVSGLSEADGEIKGSA--AAATFCSIRLLTAATQAINLIG 174
+ PA+DA+ +V V ++ D ++R+L + Q +IG
Sbjct: 70 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 129
Query: 175 KQGSTIRAIHENTGASIKVLSGDEVQSFA--TADERIIELQGEALKVLNALEAV 226
K G I+ + +T A I+V+ D + + A + + ++ + GE L V AL V
Sbjct: 130 KGGQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLLIIGEPLVVREALYQV 182
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 86 LIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPAMDAVIRVFKRVSGLSEAD 145
I +I +ET A +RV + D I+ IS KE + SPA++A IR+ +R S
Sbjct: 257 FINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCS------ 309
Query: 146 GEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATA 205
E G A S RLL +++Q LIGK G+ I + T A+I++L ++V A
Sbjct: 310 -EKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIARE 368
Query: 206 DERIIELQGEALKVLNALEAVVGHLR--KFLVDHSVLPL 242
DE ++++ G + AL V+ LR F +DH ++ L
Sbjct: 369 DEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 407
>AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=479
Length = 479
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 12/174 (6%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIV-LISGKEELD- 121
D VYR + PV K GSIIG+ GE+ K+I ET++ +R+ EA G +R+V + S EEL+
Sbjct: 43 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 102
Query: 122 -----AALSPAMDAVIRVFKRVSGLSEADGEIKGSA--AAATFCSIRLLTAATQAINLIG 174
+ PA+DA+ +V V ++ D ++R+L + Q +IG
Sbjct: 103 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 162
Query: 175 KQGSTIRAIHENTGASIKVLSGDEVQSFA--TADERIIELQGEALKVLNALEAV 226
K G I+ + +T A I+V+ D + + A + + ++ + GE L V AL V
Sbjct: 163 KGGQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLLIIGEPLVVREALYQV 215
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 86 LIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPAMDAVIRVFKRVSGLSEAD 145
I +I +ET A +RV + D I+ IS KE + SPA++A IR+ +R S
Sbjct: 290 FINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCS------ 342
Query: 146 GEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATA 205
E G A S RLL +++Q LIGK G+ I + T A+I++L ++V A
Sbjct: 343 -EKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIARE 401
Query: 206 DERIIELQGEALKVLNALEAVVGHLR--KFLVDHSVLPL 242
DE ++++ G + AL V+ LR F +DH ++ L
Sbjct: 402 DEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 440
>AT1G14170.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=454
Length = 454
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 12/174 (6%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIV-LISGKEELD- 121
D VYR + PV K GSIIG+ GE+ K+I ET++ +R+ EA G +R+V + S EEL+
Sbjct: 18 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 77
Query: 122 -----AALSPAMDAVIRVFKRVSGLSEADGEIKGSA--AAATFCSIRLLTAATQAINLIG 174
+ PA+DA+ +V V ++ D ++R+L + Q +IG
Sbjct: 78 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 137
Query: 175 KQGSTIRAIHENTGASIKVLSGDEVQSFA--TADERIIELQGEALKVLNALEAV 226
K G I+ + +T A I+V+ D + + A + + ++ + GE L V AL V
Sbjct: 138 KGGQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLLIIGEPLVVREALYQV 190
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 86 LIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPAMDAVIRVFKRVSGLSEAD 145
I +I +ET A +RV + D I+ IS KE + SPA++A IR+ +R S
Sbjct: 265 FINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCS------ 317
Query: 146 GEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATA 205
E G A S RLL +++Q LIGK G+ I + T A+I++L ++V A
Sbjct: 318 -EKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIARE 376
Query: 206 DERIIELQGEALKVLNALEAVVGHLR--KFLVDHSVLPL 242
DE ++++ G + AL V+ LR F +DH ++ L
Sbjct: 377 DEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 415
>AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10155125 FORWARD LENGTH=606
Length = 606
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 16/201 (7%)
Query: 66 VYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLI-----SGKEEL 120
VYR++ P+ VG +IG+ G++I I T+A+++V + G R++ I +EE+
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 121 ------DAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIG 174
+ L A DA+++V+ + S+ + K + RLL +Q+ +LIG
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVA-SDEENNTKTNVDRDDNKECRLLVPFSQSSSLIG 155
Query: 175 KQGSTIRAIHENTGASIKVLS---GDEVQSFATADERIIELQGEALKVLNALEAVVGHLR 231
K G I+ I T AS+KV+S D A + ++ + GE V AL AV +
Sbjct: 156 KAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMY 215
Query: 232 KFLVDHSVLPLFEKTYNTPIA 252
K ++ PL + + P A
Sbjct: 216 KINPRENI-PLDSTSQDVPAA 235
>AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723435-18725834 REVERSE LENGTH=644
Length = 644
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 66 VYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLI----SGKEELD 121
VYR++ P G +GS+IG+ G++I I +ETRAR++V++ G +R++ I S K+++
Sbjct: 45 VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIV 104
Query: 122 AALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAAT---------FCSIRLLTAATQAINL 172
+D + + + L + I S A A F RLL ++Q +
Sbjct: 105 DIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIV 164
Query: 173 IGKQGSTIRAIHENTGASIKVLS---GDEVQSFATADERIIELQGEALKVLNALEAV 226
IGK GS I+ I T A++KV+S D + A + I+ + GE V AL AV
Sbjct: 165 IGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAV 221
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVL-ISGKEELDAALSP 126
+++ K+G +IG+ G IK I + + + + V ++ D V+ ++ E D S
Sbjct: 320 KVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSM 379
Query: 127 AMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHEN 186
A++AV+ + ++++ E + ++K ++LL ++ +IGK GS I I +
Sbjct: 380 AVEAVLLLQEKIN--DEDEDKVK----------MQLLVSSKVIGCIIGKSGSIISEIRKR 427
Query: 187 TGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLR 231
T A I + G+ A ++ ++E+ GE V +AL +V LR
Sbjct: 428 TKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLR 472
>AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=632
Length = 632
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 20/215 (9%)
Query: 65 CVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTP-----DRIVLISGKEE 119
V++++ G IIG++G +I+ + ET A + SVG P +R+V +S +E
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASI-----SVGAPLKVSGERVVTVSAREN 331
Query: 120 LDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGST 179
L++ S A +A+ VF R + G G A +LL + A + G+
Sbjct: 332 LESRYSHAQNALALVFARSVEIDVEKGLRPGLHNGA-IVKTKLLVPSHFANSF---NGNG 387
Query: 180 IRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVDHSV 239
R TGA + + G++V + + +E +IE++GE V AL V LR+ L+ V
Sbjct: 388 NREAIIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKV 447
Query: 240 LPLFEKTYNTPIAQDRQAETWSNKSSLHTICRLQQ 274
L + P E+ +S ++ + QQ
Sbjct: 448 LGEMRARVSNPY------ESAGGRSQIYNLQPSQQ 476
>AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21518197 FORWARD LENGTH=652
Length = 652
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 12/175 (6%)
Query: 61 WPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEEL 120
+ + V++++ P K+ ++G +I + E VRV + G+ ++I+ IS +E
Sbjct: 321 YSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAP 380
Query: 121 DAALSPAMDAVIRVFKRVSGL-SEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGST 179
D PA +A++ + ++ L + D + RLL + +I L GK GS
Sbjct: 381 DDPFFPAQEALLHIQTQIIDLIPDKD----------NLITTRLLVPSRDSICLEGKAGS- 429
Query: 180 IRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL 234
+ I TG S+++L+ +E+ A+ ++ +I++ GE AL + LR +
Sbjct: 430 VSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHM 484
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 16/193 (8%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
K P YR++ K G +IG+ G +IK I + T A + V E G +RI+ IS
Sbjct: 59 KSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 118
Query: 116 GKEELD-----AALSPAMDAVIRVFKRV----------SGLSEADGEIKGSAAAATFCSI 160
D + SPA +A+ V R+ E + + G
Sbjct: 119 DNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVT 178
Query: 161 RLLTAATQAINLIGKQGSTIRAIHENTGASIKVLSGD-EVQSFATADERIIELQGEALKV 219
RL+ + L+GK G I + T I++L + + + E I+++ GE V
Sbjct: 179 RLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAV 238
Query: 220 LNALEAVVGHLRK 232
NAL V LR+
Sbjct: 239 KNALAIVSSRLRE 251
>AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (long
form) | chr5:1250602-1253523 REVERSE LENGTH=334
Length = 334
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARV---RVLEASVGTPDRIVLISGK-EELDAA 123
R +V GS+IG+ G I + ++ AR+ R E GT DRI++ISG +E+
Sbjct: 38 RFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNG 97
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
L +D K S L DG IRL+ + +IGK G+TI++
Sbjct: 98 LELILD------KLHSELHAEDGN-----EVEPRRRIRLVVPNSSCGGIIGKGGATIKSF 146
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
E + A IK+ D +F +R++ L G + + A++ ++ L
Sbjct: 147 IEESKAGIKISPLD--NTFYGLSDRLVTLSGTFEEQMRAIDLILAKL 191