Miyakogusa Predicted Gene

Lj6g3v1330870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1330870.1 tr|G7IG89|G7IG89_MEDTR DNA ligase OS=Medicago
truncatula GN=MTR_2g038030 PE=3 SV=1,90.31,0,DNA ligase/mRNA capping
enzyme, catalytic domain,NULL; seg,NULL; DNA_ligase_A_N,DNA ligase,
ATP-depe,CUFF.59350.1
         (270 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57160.1 | Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155...   466   e-132

>AT5G57160.1 | Symbols: ATLIG4, LIG4 | DNA ligase IV |
           chr5:23155150-23161688 REVERSE LENGTH=1219
          Length = 1219

 Score =  466 bits (1200), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 218/263 (82%), Positives = 245/263 (93%), Gaps = 1/263 (0%)

Query: 1   MARDSQDALRLINWRKGG-AKTGASAGNFALVASEVLQLRQGTASGGLTIKELNDLLDQL 59
           ++RD+ DA+RL+NWRKGG AK GA+AGNF+L+A+EVLQ RQG ASGGLTIKELNDLLD+L
Sbjct: 78  ISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMASGGLTIKELNDLLDRL 137

Query: 60  ASSENRAEKNLGLSTLIRKTNTQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVT 119
           ASSENRAEK L LSTLI+KTN QEMKW+I IILKDLKLG+SEKSIF EFHPDAEDLFNVT
Sbjct: 138 ASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKSIFQEFHPDAEDLFNVT 197

Query: 120 CDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGD 179
           CDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLA R+ +   AWKKLHGK+VV ECKFDGD
Sbjct: 198 CDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWKKLHGKDVVAECKFDGD 257

Query: 180 RIQIHKNGTEIHFFSRNFLDHSEYAHAMSAIIIQNILVDRCILDGEMLVWDTSLNRFAEF 239
           RIQIHKNGT+IH+FSRNFLDHSEYAHAMS +I+QNILVD+CILDGEMLVWDTSLNRFAEF
Sbjct: 258 RIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILDGEMLVWDTSLNRFAEF 317

Query: 240 GSNQEIAKAARDGLDSHRKLCCI 262
           GSNQEIAKAAR+GLDSH++LC +
Sbjct: 318 GSNQEIAKAAREGLDSHKQLCYV 340