Miyakogusa Predicted Gene

Lj6g3v1318650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1318650.1 tr|Q0JAK5|Q0JAK5_ORYSJ OSJNBa0009P12.21 protein
OS=Oryza sativa subsp. japonica GN=Os04g0592700 PE=2,37.41,1e-18,no
description,WD40/YVTN repeat-like-containing domain; WD40,WD40 repeat;
SUBFAMILY NOT NAMED,NULL; ,gene.g66049.t1.1
         (156 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16750.1 | Symbols: TOZ | Transducin family protein / WD-40 r...   103   5e-23

>AT5G16750.1 | Symbols: TOZ | Transducin family protein / WD-40
           repeat family protein | chr5:5504541-5509266 REVERSE
           LENGTH=876
          Length = 876

 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 85/135 (62%), Gaps = 6/135 (4%)

Query: 1   MIACICGDAIKILNSTTKSSITSAPHGYPESPKALSLSPCNRFLYTSA-SREIHAWEVST 59
            IAC CGD I I++ST  SS+ S   G  ++  AL+LSP ++ L+++  SR+I  W++ T
Sbjct: 33  FIACACGDVINIVDST-DSSVKSTIEGESDTLTALALSPDDKLLFSAGHSRQIRVWDLET 91

Query: 60  LTRSKNVWKGTKGTVTCMECHPSGKWLATGGDDRKVLIFNVDCDSGTHCKKILVHGAIVS 119
           L +    WKG +G V  M CH SG  LAT G DRKVL+++VD    TH  +   H  +VS
Sbjct: 92  L-KCIRSWKGHEGPVMGMACHASGGLLATAGADRKVLVWDVDGGFCTHYFR--GHKGVVS 148

Query: 120 CVMFHPDPDK-LLVS 133
            ++FHPD +K +L+S
Sbjct: 149 SILFHPDSNKNILIS 163