Miyakogusa Predicted Gene

Lj6g3v1314090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1314090.1 tr|Q6I608|Q6I608_ORYSJ Os05g0556900 protein
OS=Oryza sativa subsp. japonica GN=OJ1214_E03.11 PE=1
SV,76.27,2e-19,Translation proteins,Translation elongation/initiation
factor/Ribosomal, beta-barrel; 60S RIBOSOMAL
,NODE_44211_length_208_cov_760.216370.path2.1
         (59 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07070.1 | Symbols:  | Ribosomal protein L35Ae family protein...   115   8e-27
AT1G74270.1 | Symbols:  | Ribosomal protein L35Ae family protein...   114   1e-26
AT1G41880.1 | Symbols:  | Ribosomal protein L35Ae family protein...   114   2e-26
AT3G55750.1 | Symbols:  | Ribosomal protein L35Ae family protein...   113   2e-26

>AT1G07070.1 | Symbols:  | Ribosomal protein L35Ae family protein |
           chr1:2168652-2169703 FORWARD LENGTH=112
          Length = 112

 Score =  115 bits (287), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 1   MAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 59
           MAYIYKAK K+NG+HYRCIWGKV RPHGNSGVVRAKF SNLPP+SMG+RVRVFMYPSNI
Sbjct: 54  MAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>AT1G74270.1 | Symbols:  | Ribosomal protein L35Ae family protein |
           chr1:27928415-27929466 REVERSE LENGTH=112
          Length = 112

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 1   MAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 59
           MAYIYKAK K+NG+HYRCIWGKV RPHGNSGVVRAKF SNLPP+SMG+RVRVFMYPSNI
Sbjct: 54  MAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>AT1G41880.1 | Symbols:  | Ribosomal protein L35Ae family protein |
           chr1:15651585-15652427 REVERSE LENGTH=111
          Length = 111

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 56/59 (94%)

Query: 1   MAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 59
           +AYIYKAK K+NG+HYRCIWGKV RPHGNSGVVR+KF SNLPP+SMGARVRVFMYPSNI
Sbjct: 53  LAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>AT3G55750.1 | Symbols:  | Ribosomal protein L35Ae family protein |
           chr3:20698641-20699553 FORWARD LENGTH=111
          Length = 111

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 56/59 (94%)

Query: 1   MAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 59
           +AYIYKAK K+NG+HYRCIWGKV RPHGNSGVVR+KF SNLPP+SMGARVRVFMYPSNI
Sbjct: 53  LAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111