Miyakogusa Predicted Gene
- Lj6g3v1259720.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1259720.1 tr|Q52ZH8|Q52ZH8_PEA FVE OS=Pisum sativum GN=FVE
PE=2 SV=1,88.47,0,WD40 repeat-like,WD40-repeat-containing domain; no
description,WD40/YVTN repeat-like-containing doma,CUFF.59301.1
(402 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Tr... 627 e-180
AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assembl... 544 e-155
AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 rep... 160 1e-39
AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin fam... 145 4e-35
AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein / ... 142 4e-34
AT2G19540.1 | Symbols: | Transducin family protein / WD-40 repe... 88 1e-17
AT5G13480.2 | Symbols: FY | Transducin/WD40 repeat-like superfam... 62 8e-10
AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 62 9e-10
AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 62 9e-10
AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:867... 62 1e-09
AT5G13480.1 | Symbols: FY | Transducin/WD40 repeat-like superfam... 62 1e-09
AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 57 2e-08
AT1G29260.1 | Symbols: PEX7, ATPEX7 | peroxin 7 | chr1:10224923-... 56 5e-08
AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Tran... 54 1e-07
AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 53 3e-07
AT4G34460.3 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein ... 51 1e-06
AT4G34460.1 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein ... 51 1e-06
AT4G34460.4 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein ... 51 2e-06
AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 51 2e-06
AT2G47410.2 | Symbols: | WD40/YVTN repeat-like-containing domai... 50 4e-06
AT2G47410.1 | Symbols: | WD40/YVTN repeat-like-containing domai... 50 4e-06
AT3G49660.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 49 6e-06
>AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 |
Transducin family protein / WD-40 repeat family protein
| chr2:8456006-8459235 FORWARD LENGTH=507
Length = 507
Score = 627 bits (1616), Expect = e-180, Method: Compositional matrix adjust.
Identities = 297/337 (88%), Positives = 319/337 (94%), Gaps = 4/337 (1%)
Query: 60 SVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVP 119
SVDEKY+QWK LVP+LYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVP
Sbjct: 63 SVDEKYSQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVP 122
Query: 120 NTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQSSRIVAT 179
NTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQ+S+IVAT
Sbjct: 123 NTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVAT 182
Query: 180 HTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNAEFALAMCPTEPYVLSGGKDK 239
HTDSPDVLIWDVE+QPNRHAVLGA NSRPDLILTGH DNAEFALAMCPTEP+VLSGGKDK
Sbjct: 183 HTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDK 242
Query: 240 TVVLWSIEDHVTS-ASDSKSAGSIIK--GEGYDKTADGPSVGPRGIYRGHEDTVEDVTFC 296
+VVLWSI+DH+T+ +DSKS+GSIIK GEG DK + P+VGPRG+Y GHEDTVEDV F
Sbjct: 243 SVVLWSIQDHITTIGTDSKSSGSIIKQTGEGTDKN-ESPTVGPRGVYHGHEDTVEDVAFS 301
Query: 297 PSSAQEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNS 356
P+SAQEFCSVGDDSCLILWDAR G +PV KVEKAHDADLHCVDWNPHDDNLILTGSADN+
Sbjct: 302 PTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNT 361
Query: 357 VRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPDK 393
VR+FDRR LT+NGVG+PI+KFEGHKAAVLCVQWSPDK
Sbjct: 362 VRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDK 398
>AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assembly
factor group C5 | chr4:14559255-14562522 REVERSE
LENGTH=487
Length = 487
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/338 (77%), Positives = 296/338 (87%), Gaps = 14/338 (4%)
Query: 59 SSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSV 118
++VD+ Y+QWK+L+P+LYD NH LVWPSLSCRWGPQLEQA K QRLYLSEQT+GSV
Sbjct: 52 ATVDDTYSQWKTLLPILYDSFVNHTLVWPSLSCRWGPQLEQAGSKT-QRLYLSEQTNGSV 110
Query: 119 PNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQSSRIVA 178
PNTLVIANCE V Q NE+A SPFVKKYKTIIHPGEVNRIRELPQ+S+IVA
Sbjct: 111 PNTLVIANCETVN---------RQLNEKAHSPFVKKYKTIIHPGEVNRIRELPQNSKIVA 161
Query: 179 THTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNAEFALAMCPTEPYVLSGGKD 238
THTDSPD+LIW+ E+QP+R+AVLGA +SRPDL+L GH D+AEFALAMCPTEP+VLSGGKD
Sbjct: 162 THTDSPDILIWNTETQPDRYAVLGAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKD 221
Query: 239 KTVVLWSIEDHVTSA-SDSKSAGSIIK--GEGYDKTADGPSVGPRGIYRGHEDTVEDVTF 295
K+V+LW+I+DH+T A SDSKS GS K GEG DKT GPSVGPRGIY GH+DTVEDV F
Sbjct: 222 KSVILWNIQDHITMAGSDSKSPGSSFKQTGEGSDKTG-GPSVGPRGIYNGHKDTVEDVAF 280
Query: 296 CPSSAQEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADN 355
CPSSAQEFCSVGDDSCL+LWDAR G SP +KVEKAHDADLHCVDWNPHD+NLILTGSADN
Sbjct: 281 CPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADN 340
Query: 356 SVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPDK 393
+VR+FDRRNLTSNGVG+P++KFEGH+AAVLCVQWSPDK
Sbjct: 341 TVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDK 378
>AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40
repeat-like superfamily protein | chr5:23556112-23557994
FORWARD LENGTH=424
Length = 424
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 171/344 (49%), Gaps = 46/344 (13%)
Query: 61 VDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSV 118
++E+Y WK P LYD + H L WPSL+ W P E+ + K+ Q++ L T S
Sbjct: 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSESE 76
Query: 119 PNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKYKTIIHPGEVNRIRE 169
PN L++A ++ P Q++++ RS F V+ + I H GEVNR R
Sbjct: 77 PNYLMLAQVQL--PLDDTESEARQYDDD-RSEFGGFGCATGKVQIIQQINHDGEVNRARY 133
Query: 170 LPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNAEFALAMCP-T 228
+PQ+ I+AT T + +V ++D P++ + GA N PDL L GH + L+
Sbjct: 134 MPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACN--PDLKLRGHSSEG-YGLSWSKFK 190
Query: 229 EPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGPRGIYRGHED 288
+ ++LSG D + LW I + T S+ + I++ HE
Sbjct: 191 QGHLLSGSDDAQICLWDI----------------------NATPKNKSLDAQQIFKAHEG 228
Query: 289 TVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GCSPVVKVEKAHDADLHCVDWNPHDDNL 347
VEDV + F SVGDD L++WD R S V+ AH +++C+ +NP ++ +
Sbjct: 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWV 288
Query: 348 ILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSP 391
+ TGS D +V++FD R L++ +H F+ HK V V W+P
Sbjct: 289 VATGSTDKTVKLFDLRKLST-----ALHTFDSHKEEVFQVGWNP 327
>AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin family
protein / WD-40 repeat family protein |
chr2:7281615-7283583 REVERSE LENGTH=415
Length = 415
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 162/338 (47%), Gaps = 42/338 (12%)
Query: 61 VDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQA----TYKNRQRLYLSEQTDG 116
V+E ++ WK P LYD L +H L WPSL+ W P +Y +L L T G
Sbjct: 14 VEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGVHKLILGTHTSG 73
Query: 117 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQSSRI 176
S + L++A+ VV P A I N++ P V+ + I GEVNR R +PQ +
Sbjct: 74 SAQDFLMVAD--VVTPTPNAEPGIGGANQDPFIPKVEIRQRIRVDGEVNRARCMPQKPTL 131
Query: 177 VATHTDSPDVLIWDVESQPNRHAVLGATNS-RPDLILTGHIDNAEFALAMCP-TEPYVLS 234
V T +V ++D +HA T+ PDL L GH D + L+ P E Y+LS
Sbjct: 132 VGAKTSGCEVFLFDYA----KHAAKSQTSECDPDLRLVGH-DKEGYGLSWSPFKEGYLLS 186
Query: 235 GGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGPRGIYRGHEDTVEDVT 294
G +D+ + LW V++ K ++ +Y GHE + DV+
Sbjct: 187 GSQDQKICLWD----VSATPQDKVLNAMF------------------VYEGHESAIADVS 224
Query: 295 FCPSSAQEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSAD 354
+ + F S G+D L++WD R + + K H+ +++ + +NP ++ ++ T S+D
Sbjct: 225 WHMKNENLFGSAGEDGRLVIWDTR--TNQMQHQVKVHEREVNYLSFNPFNEWVLATASSD 282
Query: 355 NSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPD 392
++V +FD R L AP+H H+ V V+W P+
Sbjct: 283 STVALFDLRKLN-----APLHVMSSHEGEVFQVEWDPN 315
>AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein /
WD-40 repeat family protein | chr4:16682752-16684751
REVERSE LENGTH=424
Length = 424
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 158/337 (46%), Gaps = 40/337 (11%)
Query: 61 VDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQTDG 116
V+E+++ WK P LYD + +H L WPSL+ W P + Y +L L T G
Sbjct: 15 VEEEFSIWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPYFAVHKLILGTHTSG 74
Query: 117 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQSSRI 176
+ L++A+ VV P A + ++E P V+ + I GEVNR R +PQ +
Sbjct: 75 GAQDFLMVAD--VVIPTPDAEPGLGGRDQEPIVPKVEIKQKIRVDGEVNRARCMPQKPTL 132
Query: 177 VATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNAEFALAMCP-TEPYVLSG 235
V T +V ++D + + PDL L GH + + LA E Y+LSG
Sbjct: 133 VGAKTSGSEVFLFDYARLSGKPQT---SECDPDLRLMGH-EQEGYGLAWSSFKEGYLLSG 188
Query: 236 GKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGPRGIYRGHEDTVEDVTF 295
+D+ + LW + TA + P +Y GH+ +EDV +
Sbjct: 189 SQDQRICLWDV----------------------SATATDKVLNPMHVYEGHQSIIEDVAW 226
Query: 296 CPSSAQEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADN 355
+ F S GDD L++WD R + + K H+ +++ + +NP ++ ++ T S+D+
Sbjct: 227 HMKNENIFGSAGDDCQLVIWDLR--TNQMQHQVKVHEREINYLSFNPFNEWVLATASSDS 284
Query: 356 SVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPD 392
+V +FD R LT AP+H H+ V V+W P+
Sbjct: 285 TVALFDLRKLT-----APLHVLSKHEGEVFQVEWDPN 316
>AT2G19540.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr2:8461804-8464347 FORWARD LENGTH=469
Length = 469
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 109/247 (44%), Gaps = 39/247 (15%)
Query: 154 KYKTIIHPGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPN---------RHAVLGAT 204
+ + + H G VNRIR +PQ+S I + DS V +WD+ S N +
Sbjct: 152 QVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAESETEGKDGTSPVL 211
Query: 205 NSRPDLILTGHIDNAEFALAMCP-TEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSII 263
N P + +GH D +A+ P T +LSG + LW AS S + I
Sbjct: 212 NQAPLVNFSGHKDEG-YAIDWSPATAGRLLSGDCKSMIHLWE------PASGSWAVDPI- 263
Query: 264 KGEGYDKTADGPSVGPRGIYRGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGCSP 323
+ GH +VED+ + P+ F S D + +WD R+G SP
Sbjct: 264 ------------------PFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSP 305
Query: 324 VVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAA 383
+ KAH+AD++ + WN ++ +GS D + + D R + G A + FE HK
Sbjct: 306 ALSF-KAHNADVNVISWNRLASCMLASGSDDGTFSIRDLRLI--KGGDAVVAHFEYHKHP 362
Query: 384 VLCVQWS 390
+ ++WS
Sbjct: 363 ITSIEWS 369
>AT5G13480.2 | Symbols: FY | Transducin/WD40 repeat-like superfamily
protein | chr5:4326638-4331506 REVERSE LENGTH=653
Length = 653
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 52/234 (22%)
Query: 164 VNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNAEFAL 223
+NR+ P R++ T + S + +W+ +S ++IL H D ++
Sbjct: 132 INRVLWTPSGRRLI-TGSQSGEFTLWNGQS------------FNFEMILQAH-DQPIRSM 177
Query: 224 AMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGPRGIY 283
E Y++SG T+ W ++++ + +K+A
Sbjct: 178 VWSHNENYMVSGDDGGTLKYW--QNNMNNVKANKTA------------------------ 211
Query: 284 RGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNPH 343
H++++ D++FC + +FCS DD+ + +WD C + H D+ VDW+P
Sbjct: 212 --HKESIRDLSFCKTDL-KFCSCSDDTTVKVWDF-TKCVDESSL-TGHGWDVKSVDWHP- 265
Query: 344 DDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPDKRWSL 397
+L+++G D V+++D R+ G + GHK VL V+W+ + W L
Sbjct: 266 TKSLLVSGGKDQLVKLWDTRS------GRELCSLHGHKNIVLSVKWNQNGNWLL 313
>AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=836
Length = 836
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 43/262 (16%)
Query: 153 KKYKTIIHPGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLIL 212
K + + H VN ++ +SSR++ T + V +W + +PN A+L L
Sbjct: 8 KLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPN--AILS---------L 55
Query: 213 TGH---IDNAEFALAMCPTEPYVLSGGKDKTVVLWSIED---------HVTS--ASDSKS 258
GH ID+ F +E V +G T+ LW +E+ H ++ + D
Sbjct: 56 YGHSSGIDSVTFD----ASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP 111
Query: 259 AGSIIKGEGYDKTADGPSVGPRG---IYRGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 315
G D + +G Y+GH V + F P + S G+D+ + +W
Sbjct: 112 FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPD-GRWVVSGGEDNIVKVW 170
Query: 316 DARVGCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIH 375
D G ++ K+H+ + +D++PH+ L+ TGSAD +V+ +D G G P
Sbjct: 171 DLTAG--KLLTEFKSHEGQIQSLDFHPHE-FLLATGSADRTVKFWDLETFELIGSGGP-- 225
Query: 376 KFEGHKAAVLCVQWSPDKRWSL 397
A V C+ ++PD + L
Sbjct: 226 ----ETAGVRCLSFNPDGKTVL 243
>AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=837
Length = 837
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 43/262 (16%)
Query: 153 KKYKTIIHPGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLIL 212
K + + H VN ++ +SSR++ T + V +W + +PN A+L L
Sbjct: 8 KLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPN--AILS---------L 55
Query: 213 TGH---IDNAEFALAMCPTEPYVLSGGKDKTVVLWSIED---------HVTS--ASDSKS 258
GH ID+ F +E V +G T+ LW +E+ H ++ + D
Sbjct: 56 YGHSSGIDSVTFD----ASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP 111
Query: 259 AGSIIKGEGYDKTADGPSVGPRG---IYRGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 315
G D + +G Y+GH V + F P + S G+D+ + +W
Sbjct: 112 FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPD-GRWVVSGGEDNIVKVW 170
Query: 316 DARVGCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIH 375
D G ++ K+H+ + +D++PH+ L+ TGSAD +V+ +D G G P
Sbjct: 171 DLTAG--KLLTEFKSHEGQIQSLDFHPHE-FLLATGSADRTVKFWDLETFELIGSGGP-- 225
Query: 376 KFEGHKAAVLCVQWSPDKRWSL 397
A V C+ ++PD + L
Sbjct: 226 ----ETAGVRCLSFNPDGKTVL 243
>AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 |
chr5:8677117-8682058 FORWARD LENGTH=669
Length = 669
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 41/196 (20%)
Query: 201 LGATNSRPDLILTGHIDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAG 260
+G R +L GH ++ P +VLS D T+ LWS +K
Sbjct: 403 IGPNGRRSYTLLLGH-SGPVYSATFSPPGDFVLSSSADTTIRLWS----------TKLNA 451
Query: 261 SIIKGEGYDKTADGPSVGPRGIYRGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA-RV 319
+++ Y+GH V D F P F S D +W R+
Sbjct: 452 NLV------------------CYKGHNYPVWDAQFSPF-GHYFASCSHDRTARIWSMDRI 492
Query: 320 GCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEG 379
+++ H +D+ CV W+P + N I TGS+D +VR++D + G + F G
Sbjct: 493 ---QPLRIMAGHLSDVDCVQWHP-NCNYIATGSSDKTVRLWDVQ------TGECVRIFIG 542
Query: 380 HKAAVLCVQWSPDKRW 395
H++ VL + SPD R+
Sbjct: 543 HRSMVLSLAMSPDGRY 558
>AT5G13480.1 | Symbols: FY | Transducin/WD40 repeat-like superfamily
protein | chr5:4326638-4331557 REVERSE LENGTH=647
Length = 647
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 52/234 (22%)
Query: 164 VNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNAEFAL 223
+NR+ P R++ T + S + +W+ +S ++IL H D ++
Sbjct: 126 INRVLWTPSGRRLI-TGSQSGEFTLWNGQS------------FNFEMILQAH-DQPIRSM 171
Query: 224 AMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGPRGIY 283
E Y++SG T+ W ++++ + +K+A
Sbjct: 172 VWSHNENYMVSGDDGGTLKYW--QNNMNNVKANKTA------------------------ 205
Query: 284 RGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNPH 343
H++++ D++FC + +FCS DD+ + +WD C + H D+ VDW+P
Sbjct: 206 --HKESIRDLSFCKTDL-KFCSCSDDTTVKVWDF-TKCVDESSL-TGHGWDVKSVDWHP- 259
Query: 344 DDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPDKRWSL 397
+L+++G D V+++D R+ G + GHK VL V+W+ + W L
Sbjct: 260 TKSLLVSGGKDQLVKLWDTRS------GRELCSLHGHKNIVLSVKWNQNGNWLL 307
>AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:2701448-2706910 FORWARD LENGTH=839
Length = 839
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 43/262 (16%)
Query: 153 KKYKTIIHPGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLIL 212
K + + H VN ++ +SSR++ T + V +W + +PN A+L L
Sbjct: 8 KLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPN--AILS---------L 55
Query: 213 TGH---IDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDH--VTSASDSKSA-------- 259
GH ID+ F +E V +G T+ LW +E+ V + + +S
Sbjct: 56 YGHSSGIDSVTFD----ASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHP 111
Query: 260 -GSIIKGEGYDKTADGPSVGPRG---IYRGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 315
G D + +G Y+GH V + F P + S G+D+ + +W
Sbjct: 112 FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPD-GRWIVSGGEDNVVKVW 170
Query: 316 DARVGCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIH 375
D G ++ K+H+ + +D++PH + L+ TGSAD +V+ +D G G
Sbjct: 171 DLTAG--KLLHEFKSHEGKIQSLDFHPH-EFLLATGSADKTVKFWDLETFELIGSGGT-- 225
Query: 376 KFEGHKAAVLCVQWSPDKRWSL 397
V C+ ++PD + L
Sbjct: 226 ----ETTGVRCLTFNPDGKSVL 243
>AT1G29260.1 | Symbols: PEX7, ATPEX7 | peroxin 7 |
chr1:10224923-10225876 FORWARD LENGTH=317
Length = 317
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 283 YRGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNP 342
++ H V + P F S D L +WD R S ++ AHD ++ DWN
Sbjct: 145 FKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMII--PAHDFEILSCDWNK 202
Query: 343 HDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPDKR 394
+DD ++ T S D +V+++D R+ P+ GH AV V++SP +R
Sbjct: 203 YDDCILATSSVDKTVKVWDVRSYR-----VPLAVLNGHGYAVRKVKFSPHRR 249
>AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 |
Transducin/WD40 repeat-like superfamily protein |
chr2:13978000-13983282 FORWARD LENGTH=675
Length = 675
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 283 YRGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNP 342
Y HE V F + S DD + +W R S V+ ++ A++ CV +NP
Sbjct: 459 YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEAS-VINIDMK--ANICCVKYNP 515
Query: 343 HDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQW 389
N I GSAD+ + +D RN++ P+H F GHK AV V++
Sbjct: 516 GSSNYIAVGSADHHIHYYDLRNISQ-----PLHVFSGHKKAVSYVKF 557
>AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:1207759-1209066 FORWARD LENGTH=333
Length = 333
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 22/159 (13%)
Query: 243 LWSIEDHVTSASDSKSA--GSIIKGEGYDKT-----ADGPSVGPRGIYRGHEDTVEDVTF 295
L ++E H + S K + G+++ DKT A S+ R Y GH + D+ +
Sbjct: 36 LKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHR--YEGHSSGISDLAW 93
Query: 296 CPSSAQEFCSVGDDSCLILWDARVGCSP--VVKVEKAHDADLHCVDWNPHDDNLILTGSA 353
S + CS DD L +WDAR SP +KV + H + CV++NP NLI++GS
Sbjct: 94 -SSDSHYTCSASDDCTLRIWDAR---SPYECLKVLRGHTNFVFCVNFNP-PSNLIVSGSF 148
Query: 354 DNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPD 392
D ++R+++ + G + + H + V ++ D
Sbjct: 149 DETIRIWEVK------TGKCVRMIKAHSMPISSVHFNRD 181
>AT4G34460.3 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein
beta 1 | chr4:16477586-16479266 REVERSE LENGTH=347
Length = 347
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 47/238 (19%)
Query: 160 HPGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNA 219
H G+V + P+ +RIV+ D +++W+ + HA+ P +
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGR-LIVWNALTSQKTHAI-----KLPCAWV------- 110
Query: 220 EFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGP 279
A P V GG D ++S+ TAD P
Sbjct: 111 -MTCAFSPNGQSVACGGLDSVCSIFSLS----------------------STADKDGTVP 147
Query: 280 RG-IYRGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGCSPVV---KVEKAHDAD 334
+ GH V + P+ A S GD +C ILWD G V + + H AD
Sbjct: 148 VSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTC-ILWDVTTGLKTSVFGGEFQSGHTAD 206
Query: 335 LHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPD 392
+ V + + N ++GS D++ R++D R + + F GH+ V V++ PD
Sbjct: 207 VLSVSISGSNPNWFISGSCDSTARLWDTRAASR-----AVRTFHGHEGDVNTVKFFPD 259
>AT4G34460.1 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein
beta 1 | chr4:16477393-16479266 REVERSE LENGTH=377
Length = 377
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 47/238 (19%)
Query: 160 HPGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNA 219
H G+V + P+ +RIV+ D +++W+ + HA+ P +
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGR-LIVWNALTSQKTHAI-----KLPCAWV------- 110
Query: 220 EFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGP 279
A P V GG D ++S+ TAD P
Sbjct: 111 -MTCAFSPNGQSVACGGLDSVCSIFSLS----------------------STADKDGTVP 147
Query: 280 RG-IYRGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGCSPVV---KVEKAHDAD 334
+ GH V + P+ A S GD +C ILWD G V + + H AD
Sbjct: 148 VSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTC-ILWDVTTGLKTSVFGGEFQSGHTAD 206
Query: 335 LHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPD 392
+ V + + N ++GS D++ R++D R + + F GH+ V V++ PD
Sbjct: 207 VLSVSISGSNPNWFISGSCDSTARLWDTRAASR-----AVRTFHGHEGDVNTVKFFPD 259
>AT4G34460.4 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein
beta 1 | chr4:16477393-16479266 REVERSE LENGTH=372
Length = 372
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 47/238 (19%)
Query: 160 HPGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNA 219
H G+V + P+ +RIV+ D +++W+ + HA+ P +
Sbjct: 59 HTGKVYSLDWTPERNRIVSASQDGR-LIVWNALTSQKTHAI-----KLPCAWV------- 105
Query: 220 EFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGP 279
A P V GG D ++S+ TAD P
Sbjct: 106 -MTCAFSPNGQSVACGGLDSVCSIFSLS----------------------STADKDGTVP 142
Query: 280 RG-IYRGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGCSPVV---KVEKAHDAD 334
+ GH V + P+ A S GD +C ILWD G V + + H AD
Sbjct: 143 VSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTC-ILWDVTTGLKTSVFGGEFQSGHTAD 201
Query: 335 LHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPD 392
+ V + + N ++GS D++ R++D R + + F GH+ V V++ PD
Sbjct: 202 VLSVSISGSNPNWFISGSCDSTARLWDTRAASR-----AVRTFHGHEGDVNTVKFFPD 254
>AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:3733406-3739363 FORWARD LENGTH=1021
Length = 1021
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 55/241 (22%)
Query: 153 KKYKTIIHPGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLIL 212
K + + H G VN + ++SR++ T D V +W + G T S + L
Sbjct: 7 KLQEFVAHSGNVNCLSIGKKTSRLLLTGGDDYKVNLWSI----------GKTTS--PMSL 54
Query: 213 TGHIDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTA 272
GH + ++A E VL+G + LW +E+ +++
Sbjct: 55 CGHTSPVD-SVAFNSEEVLVLAGASSGVIKLWDLEE-----------SKMVRA------- 95
Query: 273 DGPSVGPRGIYRGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDAR-VGCSPVVKVEKA 330
+ GH V F P EF + G D+ L +WD R GC ++ K
Sbjct: 96 ----------FTGHRSNCSAVEFHPFG--EFLASGSSDTNLRVWDTRKKGC---IQTYKG 140
Query: 331 HDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWS 390
H + ++++P D +++G DN V+++D LT+ G +H+F+ H+ + + +
Sbjct: 141 HTRGISTIEFSP-DGRWVVSGGLDNVVKVWD---LTA---GKLLHEFKCHEGPIRSLDFH 193
Query: 391 P 391
P
Sbjct: 194 P 194
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 40/169 (23%)
Query: 228 TEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGPRGIYRGHE 287
T +L+GG D V LWSI G + P + GH
Sbjct: 27 TSRLLLTGGDDYKVNLWSI---------------------------GKTTSPMSLC-GHT 58
Query: 288 DTVEDVTFCPSSAQEFCSVGDDSCLI-LWDARVGCSPVVKVEKAHDADLHCVDWNPHDDN 346
V+ V F +S + G S +I LWD + S +V+ H ++ V+++P +
Sbjct: 59 SPVDSVAF--NSEEVLVLAGASSGVIKLWD--LEESKMVRAFTGHRSNCSAVEFHPFGE- 113
Query: 347 LILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPDKRW 395
+ +GS+D ++R++D R I ++GH + +++SPD RW
Sbjct: 114 FLASGSSDTNLRVWDTRK------KGCIQTYKGHTRGISTIEFSPDGRW 156
>AT2G47410.2 | Symbols: | WD40/YVTN repeat-like-containing
domain;Bromodomain | chr2:19449133-19456991 FORWARD
LENGTH=1519
Length = 1519
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 34/211 (16%)
Query: 212 LTGHIDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKT 271
L GH NA + + YV++G D+ V +WS+E + AS G I
Sbjct: 231 LRGH-RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNN 289
Query: 272 A--------------DGPSVGPRGIYRGHEDTVEDVTFCP--SSAQEFCSVGDDSCLILW 315
A P P + RGH V + F P +S + S DD +W
Sbjct: 290 ALVASASNDFVIRVWRLPDGMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIW 349
Query: 316 DARVGC-SPVVKVEKAHDAD------------LHCVDWNPHDDNLILTGSADNSVRMFDR 362
DAR P + V DA+ + C +N + + +TGS+D++ R++
Sbjct: 350 DARYSQWLPRIYVPSPSDANTGSTSNASQSHQILCCAYNA-NGTIFVTGSSDSNARVWSA 408
Query: 363 RNLTSNGVGAPIHKFE---GHKAAVLCVQWS 390
+ P H+ + GH+ V VQ+S
Sbjct: 409 SKPNLDDAEQPTHELDVLRGHENDVNYVQFS 439
>AT2G47410.1 | Symbols: | WD40/YVTN repeat-like-containing
domain;Bromodomain | chr2:19449133-19456991 FORWARD
LENGTH=1520
Length = 1520
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 34/211 (16%)
Query: 212 LTGHIDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKT 271
L GH NA + + YV++G D+ V +WS+E + AS G I
Sbjct: 232 LRGH-RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNN 290
Query: 272 A--------------DGPSVGPRGIYRGHEDTVEDVTFCP--SSAQEFCSVGDDSCLILW 315
A P P + RGH V + F P +S + S DD +W
Sbjct: 291 ALVASASNDFVIRVWRLPDGMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIW 350
Query: 316 DARVGC-SPVVKVEKAHDAD------------LHCVDWNPHDDNLILTGSADNSVRMFDR 362
DAR P + V DA+ + C +N + + +TGS+D++ R++
Sbjct: 351 DARYSQWLPRIYVPSPSDANTGSTSNASQSHQILCCAYNA-NGTIFVTGSSDSNARVWSA 409
Query: 363 RNLTSNGVGAPIHKFE---GHKAAVLCVQWS 390
+ P H+ + GH+ V VQ+S
Sbjct: 410 SKPNLDDAEQPTHELDVLRGHENDVNYVQFS 440
>AT3G49660.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:18413690-18415223 FORWARD LENGTH=317
Length = 317
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 101/251 (40%), Gaps = 45/251 (17%)
Query: 162 GEVNRIRELPQSS--RIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNA 219
G N I ++ SS R + + +D + +WDVE+ ++G T N
Sbjct: 69 GHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHT-------------NY 115
Query: 220 EFALAMCPTEPYVLSGGKDKTVVLWSI------------EDHVTSASDSKSAGSIIKGEG 267
F + P ++SG D+TV +W + D VT A D GS+I
Sbjct: 116 AFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVT-AVDFNRDGSLIVSSS 174
Query: 268 YDKTA----DGPSVGPRGIYRGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGCS 322
YD G + + V V F P+ +F VG D+ L LW+ + +
Sbjct: 175 YDGLCRIWDSGTGHCVKTLIDDENPPVSFVRFSPNG--KFILVGTLDNTLRLWN--ISSA 230
Query: 323 PVVKVEKAHDADLHCVD--WNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGH 380
+K H +C+ ++ + I++GS DN V M++ L S + + K EGH
Sbjct: 231 KFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWE---LNSKKL---LQKLEGH 284
Query: 381 KAAVLCVQWSP 391
V+ V P
Sbjct: 285 TETVMNVACHP 295