Miyakogusa Predicted Gene

Lj6g3v1249680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1249680.1 Non Chatacterized Hit- tr|B9RK72|B9RK72_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,34.58,7e-19,DUF761,Protein of unknown function DUF761, plant;
DUF4408,Domain of unknown function DUF4408,CUFF.59298.1
         (228 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56980.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    66   2e-11
AT2G26110.1 | Symbols:  | Protein of unknown function (DUF761) |...    61   6e-10
AT4G26130.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    55   4e-08

>AT5G56980.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 18 plant structures; EXPRESSED
           DURING: 12 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT4G26130.1);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:23056574-23057713
           REVERSE LENGTH=379
          Length = 379

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 5/65 (7%)

Query: 162 ERIVSLNFRRSDSVKSEKGSGPDVTGLMEEEKGVDARADDFIKSFKQQLRMQRLDSILRY 221
           E + SL  RR D+ + E+      T   + E GVDA+A DFI  FKQQL++QRLDSILRY
Sbjct: 318 ETVESLERRRPDTTRVERS-----TSFGDGEDGVDAKASDFINKFKQQLKLQRLDSILRY 372

Query: 222 RNMLR 226
           + ML+
Sbjct: 373 KEMLK 377



 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 76/174 (43%), Gaps = 31/174 (17%)

Query: 18  TMIASWLTPSCLFILLNLVIGTIAITSRSACQKRRQ------LDSCGAP-----SPSLLD 66
           T +AS+ TP+ LF+LLNL+IGTI +TSR     R+         S  AP     +PS++D
Sbjct: 5   TTVASFFTPTTLFLLLNLMIGTIVVTSRLGSGSRKHYQHHDGFGSGHAPAPLARAPSIID 64

Query: 67  RVTSFGLGCCKIKPAATVSESQRSVVDPVQNSDSPRLNRVPSSCEIANPAAPDRDPN--- 123
           RV S      K     T   S  +  D +  SD   L+  P      NPA   R P+   
Sbjct: 65  RVKSINFHLYKFPHPETELFSMTAHHD-IIGSD---LHVYPD----PNPAPLQRAPSLLD 116

Query: 124 -----ELGQNQLPCD--GLDQVPSCETESPAAPDWNQLP--RAPSFLERIVSLN 168
                 +   + P D  G D      +     PD    P  RAPS L+R+ S+N
Sbjct: 117 RVKSINMSYFKFPHDVTGSDPHSHSHSHLDLHPDPAPAPLQRAPSLLDRVKSIN 170


>AT2G26110.1 | Symbols:  | Protein of unknown function (DUF761) |
           chr2:11120869-11121798 FORWARD LENGTH=309
          Length = 309

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 160 FLERIVSLNFRRSDSVKSEKGSGPDVTGLMEEEKGVDARADDFIKSFKQQLRMQRLDSIL 219
           F E  +S+  RR  +VK      P VT + E ++ VDA+ADDFI  FK QL++QR+DSI 
Sbjct: 243 FQEDEISVEARRPATVK-----VPRVTTVEEADEEVDAKADDFINRFKHQLKLQRIDSIT 297

Query: 220 RYRNMLRR 227
           +Y+ M+++
Sbjct: 298 KYKEMVKK 305


>AT4G26130.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G56980.1);
           Has 121 Blast hits to 116 proteins in 19 species: Archae
           - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 113;
           Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
           | chr4:13240403-13241263 REVERSE LENGTH=286
          Length = 286

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 192 EKGVDARADDFIKSFKQQLRMQRLDSILRYRNMLR 226
           E+GVD +A +FI  FKQQL++QRLDS LRYR ML+
Sbjct: 250 EEGVDDKASNFINKFKQQLKLQRLDSFLRYREMLK 284