Miyakogusa Predicted Gene
- Lj6g3v1249670.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1249670.1 tr|G7JDQ2|G7JDQ2_MEDTR CCP-like protein
OS=Medicago truncatula GN=MTR_4g066770 PE=4
SV=1,37.68,5e-19,F_box_assoc_1: F-box protein interaction domain,F-box
associated interaction domain,CUFF.59293.1
(190 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 62 3e-10
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 49 2e-06
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 49 2e-06
AT3G07870.1 | Symbols: | F-box and associated interaction domai... 48 3e-06
AT3G23880.1 | Symbols: | F-box and associated interaction domai... 47 6e-06
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 23/197 (11%)
Query: 1 MRVKVHTLGTNCWRMI------QDFPSFCVPQSAVFVSGKLNWLALASESVANLQRVRWV 54
+ V++L + WR I + S+ S V +G ++W+ +ES N QRV
Sbjct: 238 LDASVYSLKADSWRRICNLNYEHNDGSYT---SGVHFNGAIHWVF--TESRHN-QRV--- 288
Query: 55 IISQDLGKECYQELLLPGDYEDDGGK-QAMNLQVLKDCLCVYILSPRRRICDIWLMMEYG 113
+++ D+ E ++E+ +P + ED + + L LCV + S DIW+M EYG
Sbjct: 289 VVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCV-VNSCYDVHDDIWVMSEYG 347
Query: 114 RKESWTKLFTVPDPNICFSGTKILHISKEDEGLVVKEHGILYLYNFRDNTFKILPIRNIE 173
+SW+++ N+ + K L +K DE ++++ G L LYNF N L I ++
Sbjct: 348 EAKSWSRIRI----NLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFETNASSNLGICGVK 403
Query: 174 --DWTVPVVYVESLISP 188
D YVESLISP
Sbjct: 404 LSDGFEANTYVESLISP 420
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 20/202 (9%)
Query: 3 VKVHTLGTNCWRMIQDFPS------------FCVPQSAVFVSGKLNWLALASESVANLQR 50
VKV +L N W+ I+ S V L+W+ +
Sbjct: 175 VKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN- 233
Query: 51 VRWVIISQDLGKECYQELLLPGDYEDDGGKQAMNLQVLKDCLCVYILSPRRRICDIWLMM 110
+I+ DL E ++ + P + M++ VL CLC+ + + + D+W+M
Sbjct: 234 ---LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCL-MCNYDQSYVDVWMMK 289
Query: 111 EYGRKESWTKLFTVPDPNI--CFSGTKILHISKEDEGLVVKEHGI-LYLYNFRDNTFKIL 167
EY ++SWTK+FTV P FS + L SK+ + ++++ + L ++ L
Sbjct: 290 EYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTL 349
Query: 168 PIRNIEDWTVPVVYVESLISPC 189
I++ + V SL+ C
Sbjct: 350 RIKDCPSSYSAELVVSSLVLGC 371
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 20/202 (9%)
Query: 3 VKVHTLGTNCWRMIQDFPS------------FCVPQSAVFVSGKLNWLALASESVANLQR 50
VKV +L N W+ I+ S V L+W+ +
Sbjct: 175 VKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN- 233
Query: 51 VRWVIISQDLGKECYQELLLPGDYEDDGGKQAMNLQVLKDCLCVYILSPRRRICDIWLMM 110
+I+ DL E ++ + P + M++ VL CLC+ + + + D+W+M
Sbjct: 234 ---LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCL-MCNYDQSYVDVWMMK 289
Query: 111 EYGRKESWTKLFTVPDPNI--CFSGTKILHISKEDEGLVVKEHGI-LYLYNFRDNTFKIL 167
EY ++SWTK+FTV P FS + L SK+ + ++++ + L ++ L
Sbjct: 290 EYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTL 349
Query: 168 PIRNIEDWTVPVVYVESLISPC 189
I++ + V SL+ C
Sbjct: 350 RIKDCPSSYSAELVVSSLVLGC 371
>AT3G07870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:2510871-2512124
FORWARD LENGTH=417
Length = 417
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 13 WRMIQDFP-SFCVPQSAVFVSGKLNWLALASESVANLQRVRWVIISQDLGKECYQELLLP 71
WR + P F S V+G+L+++ V + + +S DL E ++E+ P
Sbjct: 224 WRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRK-----FVSFDLEDEEFKEIPKP 278
Query: 72 GDYEDDGGKQAMNLQV--LKDCLCVYILSPRRRICDIWLMMEYGRKESWTKLFTV 124
D GG N ++ LK CLC + ++ DIW+M YG KESW K +++
Sbjct: 279 ----DCGGLNRTNHRLVNLKGCLCAVVYGNYGKL-DIWVMKTYGVKESWGKEYSI 328
>AT3G23880.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8622061-8623155
REVERSE LENGTH=364
Length = 364
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 22/194 (11%)
Query: 1 MRVKVHTLGTNCWRMIQDFPSFCV----PQSAVFVSGKLNWLALASESVANLQRVRWVII 56
+ K+++ WR FPS V +S ++++G LNW A +S S II
Sbjct: 184 IETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSW-------TII 236
Query: 57 SQDLGKECYQELLLPGDYEDDGGKQAMNLQVLKDCLCVYILSPRRRICDIWLMMEYGRKE 116
S D+ ++ ++EL PG G M L L+ CL + + + D+W+M E+G
Sbjct: 237 SYDMSRDEFKEL--PGPVCCGRGCFTMTLGDLRGCLSM-VCYCKGANADVWVMKEFGEVY 293
Query: 117 SWTKLFTVPDPNICFSGTKILHISKEDEGLVV--KEHGILYLYNFRDNTFKILPIRNIED 174
SW+KL ++P + L IS +GLVV + L LYN + F +I
Sbjct: 294 SWSKLLSIPGLT---DFVRPLWIS---DGLVVLLEFRSGLALYNCSNGRFHYPVSNSISG 347
Query: 175 WTVPVVYVESLISP 188
VY+++++SP
Sbjct: 348 CRDAKVYLKTMVSP 361