Miyakogusa Predicted Gene
- Lj6g3v1239580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1239580.1 Non Chatacterized Hit- tr|K3XHX2|K3XHX2_SETIT
Uncharacterized protein OS=Setaria italica GN=Si001494,31.77,4e-18,no
description,Helix-loop-helix domain; HLH,Helix-loop-helix domain;
helix loop helix domain,Helix-l,CUFF.59285.1
(398 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G56960.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 181 1e-45
AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 2e-07
AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 53 3e-07
AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 6e-07
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |... 52 1e-06
AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 1e-06
AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 1e-06
AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 1e-06
AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 1e-06
AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHL... 51 2e-06
AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 50 2e-06
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-... 50 3e-06
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 50 3e-06
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 50 3e-06
AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 5e-06
AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 8e-06
AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 8e-06
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 8e-06
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL... 49 8e-06
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 9e-06
>AT5G56960.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:23038703-23041174 REVERSE
LENGTH=466
Length = 466
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 150/408 (36%), Positives = 201/408 (49%), Gaps = 59/408 (14%)
Query: 17 QADLQTALRSLFPEDFSRQTQQIDHNNXX---XXXXXXXXXXXXXXXEYSSLLFNNIPGT 73
Q ++ +LR FPEDF+R++ + + EYSSLLF IP
Sbjct: 87 QMKIEASLREWFPEDFNRKSSPANSDYLRPPHYPSSSSSSLSPNNISEYSSLLFPLIPKP 146
Query: 74 SSQPHFPETLRGALPPINPSTSPXXXXXXXXXXXXXXXXXTTPIQFPTTPN--IEHDAIM 131
S+ T P+ P +P Q P N E +A+
Sbjct: 147 ST------TTEAVNVPVLPPLAPINMIHPQH-------------QEPLFRNRQREEEAMT 187
Query: 132 RAILNVISPVPSQQQNLPYMVHP-EATAFMRYSNRPDHITSSQMGSNLRRQSLMKRSFAF 190
+AIL V++ S ATAF RY + + + S +R+QS+M R+ +F
Sbjct: 188 QAILAVLTGPSSPPSTSSSPQRKGRATAFKRYYSMISDRGRAPLPS-VRKQSMMTRAMSF 246
Query: 191 FRSLNFVRMRER----NQATR----------------PSSTQLHHMISERRRREKLNENF 230
+ LN + RER N T PS+TQL HMISER+RREKLNE+F
Sbjct: 247 YNRLN-INQRERFTRENATTHGEGSGGSGGGGRYTSGPSATQLQHMISERKRREKLNESF 305
Query: 231 QALRALLPPGTKKDKASILITAKETLSSLLAEIDKQAKKNQELTSLFPAKESTTEGTKAT 290
QALR+LLPPGTKKDKAS+L A+E LSSL EI K ++N+E+ + + +
Sbjct: 306 QALRSLLPPGTKKDKASVLSIAREQLSSLQGEISKLLERNREVEAKLAGEREIENDLRP- 364
Query: 291 LSSSSNERFXXXXXXXXXXXXXXXRTVDLQVNLRGQISQA-DVLIRLLEFLKQVHHVSLI 349
ERF RT+DL+V LRG I + D++IRLLEFLKQ+++VSL+
Sbjct: 365 -----EERF-NVRIRHIPESTSRERTLDLRVVLRGDIIRVDDLMIRLLEFLKQINNVSLV 418
Query: 350 SMS----TNAEGNAIHQLTFRLRIIQGSEWDELAFQEAVRRVVADLAQ 393
S+ AEG+ L LR+ EWDE AFQEAVRRVVADLA
Sbjct: 419 SIEARTLARAEGDTSIVLVISLRLKIEGEWDESAFQEAVRRVVADLAH 466
>AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:9267599-9269002 FORWARD
LENGTH=467
Length = 467
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 8/87 (9%)
Query: 202 RNQATRPSSTQ---LHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSS 258
R + +P++ + L+H+ +ER+RREKLN+ F ALRA++P +K DKAS+L A ++
Sbjct: 305 RKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITD 364
Query: 259 L-----LAEIDKQAKKNQELTSLFPAK 280
+ + E +KQ K +E + PA+
Sbjct: 365 MQKKIRVYETEKQIMKRRESNQITPAE 391
>AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr4:9933702-9935471 REVERSE LENGTH=589
Length = 589
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 202 RNQATRPSSTQ---LHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSS 258
R + +P++ + L+H+ +ER+RREKLN+ F +LRA++P +K DKAS+L A +S
Sbjct: 401 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISE 460
Query: 259 LLAEIDKQAKKNQEL 273
L +++ K +EL
Sbjct: 461 LKSKLQKAESDKEEL 475
>AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17796362-17797647 REVERSE
LENGTH=328
Length = 328
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 206 TRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSL---LAE 262
+R S H+I+ER+RREKL + F AL AL+P K DKAS+L A + + L + E
Sbjct: 144 SRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGE 203
Query: 263 IDKQAKKNQELTSLFPAKES--TTEGTKATLSSSSNERFXXXXXXXXXXXXXXXRTVDL- 319
+++Q KK + L S+ K+S + + SSS + F +DL
Sbjct: 204 LEEQ-KKERRLESMVLVKKSKLILDDNNQSFSSSCEDGFS---------------DLDLP 247
Query: 320 QVNLRGQISQADVLIRLL 337
++ +R S DVLI++L
Sbjct: 248 EIEVR--FSDEDVLIKIL 263
>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
Basic helix-loop-helix (bHLH) DNA-binding family protein
| chr1:11799042-11800913 REVERSE LENGTH=623
Length = 623
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 197 VRMRERNQATRPSSTQ---LHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAK 253
V R + + +P++ + L+H+ +ER+RREKLN+ F ALRA++P +K DKAS+L A
Sbjct: 432 VEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAI 491
Query: 254 ETLSSLLAEIDK 265
++ L +++ K
Sbjct: 492 AYINELKSKVVK 503
>AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 200 RERNQATRPSSTQ---LHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETL 256
R R + RP++ + L+H+ +ER+RREKLN+ F ALR+++P +K DKAS+L A +
Sbjct: 416 RPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYI 475
Query: 257 SSLLAEI 263
+ L A++
Sbjct: 476 NELHAKL 482
>AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 200 RERNQATRPSSTQ---LHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETL 256
R R + RP++ + L+H+ +ER+RREKLN+ F ALR+++P +K DKAS+L A +
Sbjct: 416 RPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYI 475
Query: 257 SSLLAEI 263
+ L A++
Sbjct: 476 NELHAKL 482
>AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 200 RERNQATRPSSTQ---LHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETL 256
R R + RP++ + L+H+ +ER+RREKLN+ F ALR+++P +K DKAS+L A +
Sbjct: 416 RPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYI 475
Query: 257 SSLLAEI 263
+ L A++
Sbjct: 476 NELHAKL 482
>AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:362230-363639 REVERSE
LENGTH=423
Length = 423
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 213 LHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLLAEID 264
L H+ +E++RREKLN F ALRA++P ++ DKAS+L A + SL ++ID
Sbjct: 248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKID 299
>AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:6182067-6186261
FORWARD LENGTH=518
Length = 518
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 213 LHHMISERRRREKLNENFQALRALLPPGTKKDKASIL 249
L H+++ERRRREKLNE F LR+++P TK DK SIL
Sbjct: 362 LSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSIL 398
>AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:18974231-18976009 FORWARD
LENGTH=592
Length = 592
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 202 RNQATRPSSTQ---LHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSS 258
R + +P++ + L+H+ +ER+RREKLN+ F +LRA++P +K DKAS+L A ++
Sbjct: 400 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINE 459
Query: 259 LLAEIDKQAKKNQELTSLFPA--KESTTE---GTKATLSSSSNERFXXXXXXXXXXXXXX 313
L +++ + +E+ KE G++A SSN+
Sbjct: 460 LKSKLQQAESDKEEIQKKLDGMSKEGNNGKGCGSRAKERKSSNQ----DSTASSIEMEID 515
Query: 314 XRTVDLQVNLRGQISQADV-LIRLLEFLK----QVHHVSL 348
+ + V +R Q + D R +E LK +V+H SL
Sbjct: 516 VKIIGWDVMIRVQCGKKDHPGARFMEALKELDLEVNHASL 555
>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:23599809-23602734
FORWARD LENGTH=596
Length = 596
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 214 HHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLLAEIDKQAKKNQEL 273
+H +SE++RREKLNE F LR+++P +K DK SIL E L L K+ QEL
Sbjct: 405 NHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDL-------QKRVQEL 457
Query: 274 TSLFPAKESTTEGTKATL 291
S +ES T+ T+
Sbjct: 458 ES---CRESADTETRITM 472
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 214 HHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLLAEIDKQAKKNQEL 273
+H +SE++RREKLNE F LR+++P +K DK SIL E L L K+ QEL
Sbjct: 405 NHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDL-------QKRVQEL 457
Query: 274 TSLFPAKESTTEGTKATL 291
S +ES T+ T+
Sbjct: 458 ES---CRESADTETRITM 472
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 214 HHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLLAEIDKQAKKNQEL 273
+H +SE++RREKLNE F LR+++P +K DK SIL E L L K+ QEL
Sbjct: 405 NHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDL-------QKRVQEL 457
Query: 274 TSLFPAKESTTEGTKATL 291
S +ES T+ T+
Sbjct: 458 ES---CRESADTETRITM 472
>AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9678012-9679165 FORWARD
LENGTH=295
Length = 295
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 21/140 (15%)
Query: 203 NQATRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLLAE 262
+ TR H+++ER+RREKL+E F AL ALLP K DK +IL A
Sbjct: 108 SHGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDA---------- 157
Query: 263 IDKQAKKNQELTSLFPAKESTTEGTKATLSSSSNERFXXXXXXXXXXXXXXXRTVDLQVN 322
I + + ++L +L KE+T + L S F +V ++ +
Sbjct: 158 ISRMKQLQEQLRTLKEEKEATRQMESMILVKKSKVFFDEEPNLSCSP------SVHIEFD 211
Query: 323 -----LRGQISQADVLIRLL 337
+ +ISQ D+LIR+L
Sbjct: 212 QALPEIEAKISQNDILIRIL 231
>AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=305
Length = 305
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 196 FVRMRERNQA-TRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASIL 249
+R +R Q+ TR S H+++ER+RREKL + F AL AL+P K DKAS+L
Sbjct: 107 IIRGTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVL 161
>AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=304
Length = 304
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 196 FVRMRERNQA-TRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASIL 249
+R +R Q+ TR S H+++ER+RREKL + F AL AL+P K DKAS+L
Sbjct: 107 IIRGTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVL 161
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14220173 FORWARD
LENGTH=413
Length = 413
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 205 ATRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLLAEI 263
+++ S + H +SERRRR+K+NE +AL+ LLP TK D++S+L E + SL ++I
Sbjct: 272 SSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQI 330
>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:16529457-16532866
FORWARD LENGTH=637
Length = 637
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 214 HHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLLAEIDKQAKKNQEL 273
+H + E++RREKLNE F LR ++P K DK SIL E L L ++ QEL
Sbjct: 441 NHAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQEL-------ERRVQEL 493
Query: 274 TSLFPAKESTTEGT 287
S + ++ T GT
Sbjct: 494 ESCRESTDTETRGT 507
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14219887 FORWARD
LENGTH=340
Length = 340
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 205 ATRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLLAEI 263
+++ S + H +SERRRR+K+NE +AL+ LLP TK D++S+L E + SL ++I
Sbjct: 272 SSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQI 330