Miyakogusa Predicted Gene

Lj6g3v1239570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1239570.1 Non Chatacterized Hit- tr|C6TG27|C6TG27_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2 S,83.61,0,RNA
recognition motif,RNA recognition motif domain; RRM_1,RNA recognition
motif domain; PUTATIVE UNC,CUFF.59284.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04600.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   147   2e-36
AT4G26650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    53   9e-08
AT3G07810.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    51   4e-07
AT3G07810.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   4e-07
AT4G26650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   6e-07
AT5G40490.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   6e-07
AT5G55550.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    49   1e-06
AT5G55550.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    49   1e-06
AT5G55550.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    49   1e-06
AT5G55550.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    49   1e-06
AT2G43370.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   2e-06
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr...    47   6e-06
AT3G13224.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    46   8e-06

>AT5G04600.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:1323700-1325486 FORWARD LENGTH=222
          Length = 222

 Score =  147 bits (372), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 80/100 (80%), Gaps = 1/100 (1%)

Query: 22  PSEGPDFLPLEGGPARKLP-EQKPLENKGRVLYVGRIPHGFYEKEIEGYFGQFGTIKRLR 80
           P    DFLPLEGGPARK P    PL+NK  VLY+GRIPHGFYE EIE +F QFGT+KR+R
Sbjct: 31  PKPSADFLPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVR 90

Query: 81  IARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 120
           +ARNK TGKS+HFGFI+FE PEVA+I A  M++YLL EH+
Sbjct: 91  VARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHM 130


>AT4G26650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:13445552-13447592 FORWARD LENGTH=455
          Length = 455

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 40  PEQKPLENKGRV--LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIE 97
           PE++ +E+   +  L++G I     E+ ++ YFG++G +    I R++TTG++R FGFI 
Sbjct: 3   PEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIV 62

Query: 98  FESPEVAKIVADTMH 112
           F  P VA+ V    H
Sbjct: 63  FADPSVAERVIMDKH 77



 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIV 107
           ++VG +P    E E + YF QFGTI  + +  +  T + R FGFI F+S E   +V
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179


>AT3G07810.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:2492875-2495052 FORWARD LENGTH=494
          Length = 494

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTM 111
           L++G I     E+ ++ YF  FG +    I +++TTG++R FGF+ F  P VA+IV    
Sbjct: 8   LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67

Query: 112 HN 113
           HN
Sbjct: 68  HN 69


>AT3G07810.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:2492875-2495102 FORWARD LENGTH=495
          Length = 495

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTM 111
           L++G I     E+ ++ YF  FG +    I +++TTG++R FGF+ F  P VA+IV    
Sbjct: 8   LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67

Query: 112 HN 113
           HN
Sbjct: 68  HN 69


>AT4G26650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:13445265-13447592 FORWARD LENGTH=452
          Length = 452

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTM 111
           L++G I     E+ ++ YFG++G +    I R++TTG++R FGFI F  P VA+ V    
Sbjct: 14  LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 73

Query: 112 H 112
           H
Sbjct: 74  H 74



 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIV 107
           ++VG +P    E E + YF QFGTI  + +  +  T + R FGFI F+S E   +V
Sbjct: 121 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 176


>AT5G40490.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:16225483-16227423 FORWARD LENGTH=423
          Length = 423

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 48  KGRVLYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVA 104
           K + ++VG IP    + E + +F QFG +K  +I R+ +TG+SR FGF+ +ES ++ 
Sbjct: 128 KTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMV 184


>AT5G55550.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22502135-22503658 REVERSE LENGTH=460
          Length = 460

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPE-VAKIVADT 110
           ++VG +P    E+E + YF QFGTI  + +  +  T + R FGFI F+S + V +++  T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171

Query: 111 MH 112
            H
Sbjct: 172 FH 173


>AT5G55550.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22502135-22503658 REVERSE LENGTH=460
          Length = 460

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPE-VAKIVADT 110
           ++VG +P    E+E + YF QFGTI  + +  +  T + R FGFI F+S + V +++  T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171

Query: 111 MH 112
            H
Sbjct: 172 FH 173


>AT5G55550.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22502077-22503658 REVERSE LENGTH=448
          Length = 448

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPE-VAKIVADT 110
           ++VG +P    E+E + YF QFGTI  + +  +  T + R FGFI F+S + V +++  T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171

Query: 111 MH 112
            H
Sbjct: 172 FH 173


>AT5G55550.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22502077-22503658 REVERSE LENGTH=448
          Length = 448

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPE-VAKIVADT 110
           ++VG +P    E+E + YF QFGTI  + +  +  T + R FGFI F+S + V +++  T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171

Query: 111 MH 112
            H
Sbjct: 172 FH 173


>AT2G43370.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:18013431-18015376 FORWARD LENGTH=333
          Length = 333

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 51  VLYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFES-PEVAKIVAD 109
            L+VGR+ H   E  +     ++G IK LR+ R+  TG SR +GF+E+E+  E+ +   D
Sbjct: 65  TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124

Query: 110 TMHNYL 115
             H+ +
Sbjct: 125 AHHSLI 130


>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
           protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
          Length = 329

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAK 105
           LYVG +P+     E+   FG+ GT+  ++I  +K T +SR FGF+   S E AK
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 171


>AT3G13224.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4254848-4256014 FORWARD LENGTH=231
          Length = 231

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%)

Query: 48  KGRVLYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVA 104
           K + ++VG IP    E E++ +F ++G +   ++ R+  T +SR FGF+ F+S EV 
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVV 163