Miyakogusa Predicted Gene

Lj6g3v1239560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1239560.1 tr|G7IIL3|G7IIL3_MEDTR RecA OS=Medicago
truncatula GN=MTR_2g039670 PE=3 SV=1,84.98,0,RECA_1,DNA
recombination/repair protein RecA, conserved site; DNA REPAIR PROTEIN
RECA,DNA recombinat,CUFF.59283.1
         (426 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19490.1 | Symbols:  | recA DNA recombination family protein ...   565   e-161
AT3G10140.1 | Symbols: RECA3 | RECA homolog 3 | chr3:3134984-313...   293   2e-79
AT3G32920.1 | Symbols:  | P-loop containing nucleoside triphosph...   285   3e-77
AT1G79050.1 | Symbols:  | recA DNA recombination family protein ...   269   3e-72
AT1G79050.2 | Symbols:  | recA DNA recombination family protein ...   237   1e-62
AT3G32920.2 | Symbols:  | P-loop containing nucleoside triphosph...   199   4e-51

>AT2G19490.1 | Symbols:  | recA DNA recombination family protein |
           chr2:8441732-8444006 FORWARD LENGTH=430
          Length = 430

 Score =  565 bits (1457), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 298/422 (70%), Positives = 342/422 (81%), Gaps = 9/422 (2%)

Query: 1   MARLLRNANTFLLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEE 60
           MAR+LRN   + L+ S     L  RS     VVGTS  L     K K++SKSDG+ SSEE
Sbjct: 1   MARILRN--VYSLRSSLFSSELLRRS-----VVGTSFQLRGFAAKAKKKSKSDGNGSSEE 53

Query: 61  NMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGR 120
            MSKK++ALQQALDQITS+FGKGSIM+LGR+VSP+NVPV STGSFALD+ALG+GGLPKGR
Sbjct: 54  GMSKKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGR 113

Query: 121 VVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPD 180
           VVEI+GPEASGKTTLALHVI+EAQK GG C FVDAEHALD +LA++IGVNT+NLLLSQPD
Sbjct: 114 VVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPD 173

Query: 181 CGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCH 240
           CGEQALSLVDTLIRSG            LVPKGEL+GEMGDAHMAMQARLMSQALRKL H
Sbjct: 174 CGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSH 233

Query: 241 SLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEET 300
           SLSLSQ +LIFINQVRSK+STFGGFGGPTEVTCGGNALKFY+S+RLNIKRIGL+KKGEET
Sbjct: 234 SLSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEET 293

Query: 301 LGSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRN 360
            GS V VK+VKNK APPF+TAQFELEFGKGIC+  EII+LSIK+K I K+G+FY  NG+N
Sbjct: 294 TGSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKN 353

Query: 361 YHGKDALKRFL-ADSSSTEELATKLREKLLNGE-TDTAPEAQVTIGDVSEETVFPDSTDE 418
           YHGK+ALKRFL  + S  EEL  KL++KL+  E  D   E++    D     V PD+TD+
Sbjct: 354 YHGKEALKRFLKQNESDQEELMKKLQDKLIADEAADKETESESEEEDSLRVVVSPDNTDD 413

Query: 419 EA 420
           E+
Sbjct: 414 ES 415


>AT3G10140.1 | Symbols: RECA3 | RECA homolog 3 |
           chr3:3134984-3137069 FORWARD LENGTH=389
          Length = 389

 Score =  293 bits (750), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/332 (44%), Positives = 222/332 (66%), Gaps = 1/332 (0%)

Query: 59  EENMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPK 118
           +  +++KD AL  AL Q++  F K S + L R    + V V+STGS  LD+ALG+GGLPK
Sbjct: 56  DRKVAEKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLPK 115

Query: 119 GRVVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQ 178
           GR+VE++G EASGKTTLALH+I EAQKLGGYCA++DAE+A+D +LAESIGVNT+ LL+S+
Sbjct: 116 GRMVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISR 175

Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           P   E+ L++VD L +SG            L P+ ELD  +G+ +   Q+R+M+QALRK+
Sbjct: 176 PSSAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKI 235

Query: 239 CHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGE 298
            +S+  SQ +++F+NQVRS + +   F    EVTCGGNAL F++++RL + R GL+K   
Sbjct: 236 HYSVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTAN 295

Query: 299 ETLGSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNG 358
           +  G +V V+VVKNK AP  K ++  + FG G   + E++EL+ ++ +I + G+ Y   G
Sbjct: 296 KISGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEG 355

Query: 359 RNYHGKDALKRFLADS-SSTEELATKLREKLL 389
               GKDA +++L ++  + + +   LR +L 
Sbjct: 356 EVIEGKDAAEKYLVENKEALDTVVAILRNQLF 387


>AT3G32920.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr3:13485399-13486713
           REVERSE LENGTH=226
          Length = 226

 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/214 (67%), Positives = 168/214 (78%), Gaps = 21/214 (9%)

Query: 86  MWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGPEASGKTTLALHVISEAQK 145
           M+L R+VSP+NVPV STGSFALD+ALG+GGLPKGR+VEI+GPEASGKT LALH++S    
Sbjct: 1   MYLSRAVSPRNVPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLS---- 56

Query: 146 LGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXX 205
                        L ++LA++IGVNT+NLLLSQPDCG+QALSLVDTLI+SG         
Sbjct: 57  -----------MLLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDS 105

Query: 206 XXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGF 265
              LVPKGELDGEMGDAHMA+QARLMSQALRK  HSL LSQ +LIFINQVR +      F
Sbjct: 106 VAALVPKGELDGEMGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRER------F 159

Query: 266 GGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEE 299
           GGPTEVT GGNALKFY+ +RL+IKRIGL+KKGEE
Sbjct: 160 GGPTEVTSGGNALKFYAPMRLDIKRIGLIKKGEE 193


>AT1G79050.1 | Symbols:  | recA DNA recombination family protein |
           chr1:29737084-29740140 REVERSE LENGTH=439
          Length = 439

 Score =  269 bits (687), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 150/330 (45%), Positives = 215/330 (65%), Gaps = 9/330 (2%)

Query: 68  ALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGP 127
           AL+ A++ I S+FGKGS+  LG S     V   S+G   LD+ALG GGLPKGRVVEI+GP
Sbjct: 86  ALEAAMNDINSSFGKGSVTRLG-SAGGALVETFSSGILTLDLALG-GGLPKGRVVEIYGP 143

Query: 128 EASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALS 187
           E+SGKTTLALH I+E QKLGG    VDAEHA D   ++++GV+ +NL++ QPD GE AL 
Sbjct: 144 ESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALE 203

Query: 188 LVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQC 247
             D + RSG            L P+ E++GE+G   M +QARLMSQALRK+  + S + C
Sbjct: 204 TADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGC 263

Query: 248 ILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVK--KGEETLGSHV 305
            LIF+NQ+R KI  +  +G P EVT GG ALKF++SVRL I+  G +K  KG+E +G   
Sbjct: 264 TLIFLNQIRYKIGVY--YGNP-EVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRA 320

Query: 306 LVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEY-NGRNYHGK 364
            V+V K+K + P+K A+FE+ FG+G+ +   +++ +   +++ K GS+Y Y + R   G+
Sbjct: 321 RVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGR 380

Query: 365 D-ALKRFLADSSSTEELATKLREKLLNGET 393
           + AL+    + +  +E+  K+R  +L+GE 
Sbjct: 381 EKALQHLRENPALQDEIEKKVRLLMLDGEV 410


>AT1G79050.2 | Symbols:  | recA DNA recombination family protein |
           chr1:29737364-29740140 REVERSE LENGTH=343
          Length = 343

 Score =  237 bits (604), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/254 (50%), Positives = 170/254 (66%), Gaps = 7/254 (2%)

Query: 68  ALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGP 127
           AL+ A++ I S+FGKGS+  LG S     V   S+G   LD+ALG GGLPKGRVVEI+GP
Sbjct: 86  ALEAAMNDINSSFGKGSVTRLG-SAGGALVETFSSGILTLDLALG-GGLPKGRVVEIYGP 143

Query: 128 EASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALS 187
           E+SGKTTLALH I+E QKLGG    VDAEHA D   ++++GV+ +NL++ QPD GE AL 
Sbjct: 144 ESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALE 203

Query: 188 LVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQC 247
             D + RSG            L P+ E++GE+G   M +QARLMSQALRK+  + S + C
Sbjct: 204 TADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGC 263

Query: 248 ILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVK--KGEETLGSHV 305
            LIF+NQ+R KI  +  +G P EVT GG ALKF++SVRL I+  G +K  KG+E +G   
Sbjct: 264 TLIFLNQIRYKIGVY--YGNP-EVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRA 320

Query: 306 LVKVVKNKHAPPFK 319
            V+V K+K + P+K
Sbjct: 321 RVRVQKSKVSRPYK 334


>AT3G32920.2 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr3:13485399-13486713
           REVERSE LENGTH=195
          Length = 195

 Score =  199 bits (505), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/150 (66%), Positives = 117/150 (78%), Gaps = 15/150 (10%)

Query: 86  MWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGPEASGKTTLALHVISEAQK 145
           M+L R+VSP+NVPV STGSFALD+ALG+GGLPKGR+VEI+GPEASGKT LALH++S    
Sbjct: 1   MYLSRAVSPRNVPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLS---- 56

Query: 146 LGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXX 205
                        L ++LA++IGVNT+NLLLSQPDCG+QALSLVDTLI+SG         
Sbjct: 57  -----------MLLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDS 105

Query: 206 XXXLVPKGELDGEMGDAHMAMQARLMSQAL 235
              LVPKGELDGEMGDAHMA+QARLMSQAL
Sbjct: 106 VAALVPKGELDGEMGDAHMAIQARLMSQAL 135