Miyakogusa Predicted Gene
- Lj6g3v1229490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1229490.1 Non Chatacterized Hit- tr|I3SY47|I3SY47_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,68.83,1e-18,seg,NULL,CUFF.59276.1
(186 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 90 7e-19
AT5G57000.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 88 4e-18
AT1G72690.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 72 1e-13
AT1G17490.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 56 2e-08
>AT5G57000.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G72690.1); Has 153 Blast hits to 116 proteins
in 29 species: Archae - 0; Bacteria - 6; Metazoa - 33;
Fungi - 7; Plants - 82; Viruses - 0; Other Eukaryotes -
25 (source: NCBI BLink). | chr5:23063870-23065203
REVERSE LENGTH=187
Length = 187
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 70/130 (53%), Gaps = 18/130 (13%)
Query: 58 VRAPNVFERAKEEFEALAQVFHHKKEEPTSDIRDGNQVAESRHKQEIPSSPSSETKTKAE 117
V+APN+FERAKEE +A+ H +K S+ K E S + K K
Sbjct: 28 VKAPNMFERAKEELDAVIGAIHQRKS--------------SKDKMEFKSDKPEDGKKKP- 72
Query: 118 NIFVKAKEEIKAMIXXXX---XXXXXXXETHGRSDDIDENTPTNEVKGPDVFERVKEEFE 174
N+ KA+E++K++ ETHGRSDDI ENTP +EVK P+V ER KEE E
Sbjct: 73 NMLKKAREDLKSLFLKEKPPRHLHHHHKETHGRSDDISENTPVDEVKAPNVLERAKEEIE 132
Query: 175 AVFQAIHPKK 184
AV IH KK
Sbjct: 133 AVIDTIHSKK 142
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 40 RETHGLDDSINENTSLDDVRAPNVFERAKEEFEALAQVFHHKKEE 84
+ETHG D I+ENT +D+V+APNV ERAKEE EA+ H KK+E
Sbjct: 100 KETHGRSDDISENTPVDEVKAPNVLERAKEEIEAVIDTIHSKKKE 144
>AT5G57000.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G72690.1); Has 141 Blast hits to 104 proteins
in 24 species: Archae - 0; Bacteria - 6; Metazoa - 27;
Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes -
18 (source: NCBI BLink). | chr5:23063870-23065203
REVERSE LENGTH=186
Length = 186
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 70/131 (53%), Gaps = 21/131 (16%)
Query: 58 VRAPNVFERAKEEFEALAQVFHHKKEEPTSDIRDGNQVAESRHKQEIPSS-PSSETKTKA 116
V+APN+FERAKEE +A+ H +K S+ K E S P + K
Sbjct: 28 VKAPNMFERAKEELDAVIGAIHQRKS--------------SKDKMEFKSDKPDGKKKP-- 71
Query: 117 ENIFVKAKEEIKAMIXXXX---XXXXXXXETHGRSDDIDENTPTNEVKGPDVFERVKEEF 173
N+ KA+E++K++ ETHGRSDDI ENTP +EVK P+V ER KEE
Sbjct: 72 -NMLKKAREDLKSLFLKEKPPRHLHHHHKETHGRSDDISENTPVDEVKAPNVLERAKEEI 130
Query: 174 EAVFQAIHPKK 184
EAV IH KK
Sbjct: 131 EAVIDTIHSKK 141
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 40 RETHGLDDSINENTSLDDVRAPNVFERAKEEFEALAQVFHHKKEE 84
+ETHG D I+ENT +D+V+APNV ERAKEE EA+ H KK+E
Sbjct: 99 KETHGRSDDISENTPVDEVKAPNVLERAKEEIEAVIDTIHSKKKE 143
>AT1G72690.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:27361223-27361745 FORWARD
LENGTH=87
Length = 87
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 109 SSETKTKAENIFVKAKEEIKAMIXXXXXXXXX-XXETHGRSDDIDENTPTNEVKGPDVFE 167
S E K+ N+F + KEEI+AM ETHG SDDIDE+TP + VKGP F+
Sbjct: 7 SEEKTVKSPNVFERVKEEIEAMGHHEKSKSRHHDKETHGTSDDIDESTPIDYVKGPGFFQ 66
Query: 168 RVKEEFEAVFQAIHPKKES 186
R+KEE EA+F A+ PK+ S
Sbjct: 67 RLKEEIEAIFNAVTPKRSS 85
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 19 ERAKEKIEAILHHHQS-SCHHKRETHGLDDSINENTSLDDVRAPNVFERAKEEFEAL 74
ER KE+IEA+ HH +S S HH +ETHG D I+E+T +D V+ P F+R KEE EA+
Sbjct: 19 ERVKEEIEAMGHHEKSKSRHHDKETHGTSDDIDESTPIDYVKGPGFFQRLKEEIEAI 75
>AT1G17490.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G72690.1); Has 57 Blast hits to 45 proteins in
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:6008669-6009165 FORWARD
LENGTH=77
Length = 77
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 107 SPSSETKTKAENIFVKAKEEIKAMIXXXXXXXXXXXETHGRSDDIDENTPTNEVKGPDVF 166
S SE KT N+ KEE ++M ETHGRS+DIDE T ++VKGP V
Sbjct: 7 SSLSEVKT---NVIGSRKEEKESMFHGK--------ETHGRSEDIDEKTRVDDVKGPGVL 55
Query: 167 ERVKEEFEAVFQAIHPKKES 186
R+ EE EA+ A+ P K S
Sbjct: 56 GRMMEEMEAIVDAVTPNKSS 75
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 1 MSESKSTTMSEGRAHSLPERAKEKIEAILHHHQSSCHHKRETHGLDDSINENTSLDDVRA 60
M+E K +++SE + + + R +EK S H +ETHG + I+E T +DDV+
Sbjct: 1 MAEPKQSSLSEVKTNVIGSRKEEK---------ESMFHGKETHGRSEDIDEKTRVDDVKG 51
Query: 61 PNVFERAKEEFEALA 75
P V R EE EA+
Sbjct: 52 PGVLGRMMEEMEAIV 66