Miyakogusa Predicted Gene

Lj6g3v1226320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1226320.1 Non Chatacterized Hit- tr|I3STA5|I3STA5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.51,0,coiled-coil,NULL; Utp11,Small-subunit processome, Utp11;
U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 1,CUFF.59271.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60360.1 | Symbols: EDA14, UTP11 | embryo sac development arr...   254   4e-68

>AT3G60360.1 | Symbols: EDA14, UTP11 | embryo sac development arrest
           14 | chr3:22312477-22314002 REVERSE LENGTH=228
          Length = 228

 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 123/203 (60%), Positives = 162/203 (79%), Gaps = 1/203 (0%)

Query: 1   MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQ 60
           MSSLRNA+PR AHKER+QP +RK+FG LEKHKDY+ RA A+HKK+ETL+ILR+KAA +N 
Sbjct: 1   MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60

Query: 61  DEFYFKMIRTRTEDGVHRPESEANKYTQDELMLMKTQDLGYVLQKLQSERKKIEKLAASL 120
           DEF FKMI ++T DG HRP+ E NKY+ +ELM+MKTQD+GYV QK QSE+ KI+KL ASL
Sbjct: 61  DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASL 120

Query: 121 HSIDNQPTNKHILFAEDREEAKELQSQYSRSEIPLISDNIHTNIKRKIDRSYKELEARRT 180
               +Q + +H+ +AEDREEA+EL+ Q  RS+  + +  I  +IK+K+DRSY++LE R++
Sbjct: 121 QCTGDQSSRRHVYYAEDREEARELEVQ-GRSKSDISTVEIPKDIKKKMDRSYRDLEGRKS 179

Query: 181 RLSQLQKMYMDMSMKKELQKNGR 203
           R   L+K+Y DMSM+KELQK GR
Sbjct: 180 RAKDLEKLYTDMSMQKELQKKGR 202