Miyakogusa Predicted Gene
- Lj6g3v1211750.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1211750.1 tr|Q56YV7|Q56YV7_ARATH Ribosomal protein L18ae
family protein OS=Arabidopsis thaliana GN=At1g54217
P,62.37,4e-19,seg,NULL,CUFF.59250.1
(140 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26060.1 | Symbols: | Ribosomal protein L18ae family | chr4:... 142 6e-35
AT5G57060.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 137 2e-33
AT5G57060.2 | Symbols: | BEST Arabidopsis thaliana protein matc... 122 9e-29
AT1G54217.2 | Symbols: | Ribosomal protein L18ae family | chr1:... 99 1e-21
AT1G54217.3 | Symbols: | Ribosomal protein L18ae family | chr1:... 97 3e-21
AT1G54217.1 | Symbols: | Ribosomal protein L18ae family | chr1:... 97 3e-21
>AT4G26060.1 | Symbols: | Ribosomal protein L18ae family |
chr4:13214972-13215955 REVERSE LENGTH=133
Length = 133
Score = 142 bits (359), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 87/130 (66%), Gaps = 2/130 (1%)
Query: 4 GASMEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFRDATDNDKGKYALIRDPEDFQA 63
G +++E D EL + V+DKH L+RP A+ YS +DA KG+Y L++D ++ +
Sbjct: 2 GETVKERGD--GSAELVKSVADKHAGLVRPVAKYYSAVKDAMVCGKGRYTLVKDVDEVEN 59
Query: 64 GLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXXXXXXX 123
G+YDKPLPCFGCG+GWFSFL GF+ P LWYYAT+LYFGNYYRKDPRER
Sbjct: 60 GVYDKPLPCFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDPRERAGLAASAITAMG 119
Query: 124 CSVALLITGV 133
S+ LL+ V
Sbjct: 120 FSLLLLVIVV 129
>AT5G57060.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: defense response to Gram-negative
bacterium, cytolysis; LOCATED IN: integral to membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Channel
forming colicin, C-terminal cytotoxic
(InterPro:IPR000293); BEST Arabidopsis thaliana protein
match is: Ribosomal protein L18ae family
(TAIR:AT4G26060.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:23090666-23091796 FORWARD LENGTH=137
Length = 137
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 7 MEETADLRNG---VELTRPVSDKHLDLLRPSARNYSVFRDATDNDKGKYALIRDPEDFQA 63
M+E + +G EL + ++D+H L++ ++R+YS +DA K +Y L++D +D +
Sbjct: 1 MDENSKFVSGNGRTELVKFIADRHAKLMKQASRHYSAIKDAMARGKKRYTLVKDVDDMET 60
Query: 64 GLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXXXXXXX 123
G YDKPLPCFGCG+GWFSFL GF+ P LWYYA LYFGNYYRKDPRER
Sbjct: 61 GAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFGNYYRKDPRERAGLAASAITAMG 120
Query: 124 CSVALLITGVILLFH 138
S+ LL+ F+
Sbjct: 121 FSLVLLVIFAFRWFY 135
>AT5G57060.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ribosomal protein L18ae family (TAIR:AT4G26060.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr5:23091072-23091796 FORWARD
LENGTH=110
Length = 110
Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 70/108 (64%)
Query: 31 LRPSARNYSVFRDATDNDKGKYALIRDPEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPP 90
++ ++R+YS +DA K +Y L++D +D + G YDKPLPCFGCG+GWFSFL GF+ P
Sbjct: 1 MKQASRHYSAIKDAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPF 60
Query: 91 LWYYATILYFGNYYRKDPRERXXXXXXXXXXXXCSVALLITGVILLFH 138
LWYYA LYFGNYYRKDPRER S+ LL+ F+
Sbjct: 61 LWYYAAFLYFGNYYRKDPRERAGLAASAITAMGFSLVLLVIFAFRWFY 108
>AT1G54217.2 | Symbols: | Ribosomal protein L18ae family |
chr1:20244346-20245005 REVERSE LENGTH=103
Length = 103
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 43 DATDNDKGKYALIRD-PEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFG 101
D + KGKY LIRD ED + G + KPLPCFG G+GWFSFL GF+ P WY AT LY
Sbjct: 5 DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64
Query: 102 NYYRKDPRERXXXXXXXXXXXXCSVALLITGVILLF 137
+YY +DPRER SVAL+IT ++L+F
Sbjct: 65 SYYHRDPRERSGLAASAIAALIFSVALVITVLVLVF 100
>AT1G54217.3 | Symbols: | Ribosomal protein L18ae family |
chr1:20244346-20245005 REVERSE LENGTH=102
Length = 102
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 43 DATDNDKGKYALIRD-PEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFG 101
+ + KGKY LIRD ED + G + KPLPCFG G+GWFSFL GF+ P WY AT LY
Sbjct: 4 NLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 63
Query: 102 NYYRKDPRERXXXXXXXXXXXXCSVALLITGVILLF 137
+YY +DPRER SVAL+IT ++L+F
Sbjct: 64 SYYHRDPRERSGLAASAIAALIFSVALVITVLVLVF 99
>AT1G54217.1 | Symbols: | Ribosomal protein L18ae family |
chr1:20244346-20245005 REVERSE LENGTH=102
Length = 102
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 43 DATDNDKGKYALIRD-PEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFG 101
+ + KGKY LIRD ED + G + KPLPCFG G+GWFSFL GF+ P WY AT LY
Sbjct: 4 NLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 63
Query: 102 NYYRKDPRERXXXXXXXXXXXXCSVALLITGVILLF 137
+YY +DPRER SVAL+IT ++L+F
Sbjct: 64 SYYHRDPRERSGLAASAIAALIFSVALVITVLVLVF 99