Miyakogusa Predicted Gene

Lj6g3v1211610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1211610.1 tr|G7I4A7|G7I4A7_MEDTR Integral membrane protein
OS=Medicago truncatula GN=MTR_1g008180 PE=4 SV=1,69.49,2e-17,
,CUFF.59244.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35460.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   251   1e-67

>AT5G35460.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2838
           (InterPro:IPR021261); Has 1807 Blast hits to 1807
           proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:13672598-13674546 FORWARD LENGTH=381
          Length = 381

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 137/161 (85%)

Query: 1   MRPEGTAERAMWPYVEDKSYLWTWLFLVPLVVYTLWQVLYFLIVNVLRRQRFLRDPEVMT 60
           M P GT  R  WPYVEDK+YL+TWLFLVPLVVYTLWQVLYFLIVNVLRRQR LRDPEVMT
Sbjct: 201 MHPVGTDRRVSWPYVEDKAYLFTWLFLVPLVVYTLWQVLYFLIVNVLRRQRLLRDPEVMT 260

Query: 61  SYRELSKKAQKANNIWWRSSGLLGDQNRFLMYIVFQGMFTVATTALTVPIFLSYELSVVF 120
           SYRELSKKA+KANN  W+ SGLLGDQNR  MYI+FQ +FTVAT ALTVPIFLSY L V+F
Sbjct: 261 SYRELSKKAEKANNKLWQLSGLLGDQNRIWMYILFQAIFTVATMALTVPIFLSYRLHVIF 320

Query: 121 QILKISASAWNGGSFVLDVMPKQVILKEKKKSEVIQHAQIQ 161
           QILKISA+ WNGGSF+L+VMP+QVI KEKKK   +Q  + Q
Sbjct: 321 QILKISAAVWNGGSFLLEVMPRQVIQKEKKKKAEMQPIEEQ 361