Miyakogusa Predicted Gene

Lj6g3v1201450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1201450.1 Non Chatacterized Hit- tr|I3SFU1|I3SFU1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,96.06,0,Snf7,Snf7; CHARGED MULTIVESICULAR BODY PROTEIN 2A
(CHROMATIN-MODIFYING PROTEIN 2A)(CHMP2A)(VACUOLAR ,CUFF.59247.1
         (223 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:25887...   278   3e-75
AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associa...   110   7e-25
AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   105   3e-23
AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   105   3e-23
AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sortin...    54   1e-07
AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein | chr5:7681...    52   4e-07

>AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein |
           chr2:2588740-2590285 REVERSE LENGTH=225
          Length = 225

 Score =  278 bits (710), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 159/204 (77%), Gaps = 1/204 (0%)

Query: 1   MLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLK 60
           MLDKSIREIERERQGLQ QEKKLI EIKK+AKQGQMGAV+VMAKDL+RTRHQ+EKFYKLK
Sbjct: 22  MLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLK 81

Query: 61  SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTT 120
           SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKME+ +
Sbjct: 82  SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVS 141

Query: 121 EVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQELLNXXXXXXXXXXXXTKVPQVE 180
           EVM                    V+QVLDEIGI++NQEL+N             KV Q E
Sbjct: 142 EVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAE 201

Query: 181 -TAATDDGGIDSDLQARPHNISRI 203
            T A D GGIDSDLQAR  N+ ++
Sbjct: 202 ATGAEDSGGIDSDLQARLDNLRKM 225


>AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associated
           protein 2.3 | chr1:1011388-1013212 REVERSE LENGTH=210
          Length = 210

 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 96/158 (60%)

Query: 2   LDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKS 61
           + ++ R IE+E   LQ++EKKL+LEIK++AK G  GA +++A+ L+R R Q+      ++
Sbjct: 21  MTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRA 80

Query: 62  QLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTE 121
           Q++G++   Q + +  ++   M+G TKAM  M++ M+     K+M+EF++Q+ +M++TTE
Sbjct: 81  QMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTE 140

Query: 122 VMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQEL 159
           +M                     NQVLDEIGI++  +L
Sbjct: 141 MMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQL 178


>AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946516-17948222 FORWARD LENGTH=202
          Length = 202

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 90/155 (58%)

Query: 5   SIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQ 64
           + R IERE   LQ +EK+L+ EIKK+AK G   A +++A+ LVR R Q+      ++Q++
Sbjct: 4   ATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIR 63

Query: 65  GVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTEVMX 124
           GV+   Q L ++ ++   MKG TKAM  MN+QM      K++++F++Q+ ++++T E+M 
Sbjct: 64  GVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMS 123

Query: 125 XXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQEL 159
                               NQVLDEIG+ V  +L
Sbjct: 124 EAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQL 158


>AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946081-17948222 FORWARD LENGTH=222
          Length = 222

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 90/155 (58%)

Query: 5   SIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQ 64
           + R IERE   LQ +EK+L+ EIKK+AK G   A +++A+ LVR R Q+      ++Q++
Sbjct: 24  ATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIR 83

Query: 65  GVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTEVMX 124
           GV+   Q L ++ ++   MKG TKAM  MN+QM      K++++F++Q+ ++++T E+M 
Sbjct: 84  GVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMS 143

Query: 125 XXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQEL 159
                               NQVLDEIG+ V  +L
Sbjct: 144 EAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQL 178


>AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting
           46.1 | chr1:6099210-6100153 FORWARD LENGTH=203
          Length = 203

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 70/150 (46%)

Query: 7   REIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQGV 66
           + ++R+ +  + +E+   L++KK+ ++G M   R+ A++ +R R +   + +L S+L  V
Sbjct: 19  KSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYLRLSSRLDAV 78

Query: 67  SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTEVMXXX 126
             R+ T      + ++M  + K++       NL  + + M  FE+Q   ME+  E M   
Sbjct: 79  VARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDSFEKQFVNMEVQAEFMDNA 138

Query: 127 XXXXXXXXXXXXXXXXXVNQVLDEIGINVN 156
                            + QV D+ G+ V+
Sbjct: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVS 168


>AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein |
           chr5:7681380-7682720 FORWARD LENGTH=229
          Length = 229

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 64/112 (57%), Gaps = 2/112 (1%)

Query: 2   LDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKS 61
           L +  R IER+ + +Q +E+ +   IK++AK+  M + + +AK++V +R  V + Y+ K+
Sbjct: 25  LRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKA 84

Query: 62  QLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQ 112
           Q+  +S+ + +++   + +G   K   + M  +N  M  P +   MQEF ++
Sbjct: 85  QMNSISMHLGESVAIARTVGHLSKS-AEVMKLVNNLMKAPQMAATMQEFSKE 135