Miyakogusa Predicted Gene
- Lj6g3v1201400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1201400.1 tr|Q6WG36|Q6WG36_PEA RPA 70kDa subunit OS=Pisum
sativum PE=2 SV=1,81.35,0,REPLICATION FACTOR A 1, RFA1,NULL; Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like;,CUFF.59251.1
(625 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic... 922 0.0
AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic... 894 0.0
AT4G19130.1 | Symbols: | Replication factor-A protein 1-related... 666 0.0
AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A p... 646 0.0
AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | ... 341 1e-93
AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A p... 327 1e-89
AT1G52950.1 | Symbols: | Nucleic acid-binding, OB-fold-like pro... 89 7e-18
>AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
replication protein A 1A | chr2:2585215-2587601 FORWARD
LENGTH=640
Length = 640
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/641 (68%), Positives = 530/641 (82%), Gaps = 21/641 (3%)
Query: 1 MSVNLTANAIPTIIGGDVNAKPLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSSHQAMLA 60
M V+LT NAI I GDVN KPL+QVL++ ++ G + + Q+RYR ++SD VS+ AM+A
Sbjct: 1 MPVSLTPNAITAIHDGDVNLKPLLQVLEIKMI-GRSQERSQERYRFLISDGVSAQHAMVA 59
Query: 61 AQLNDHVRNGRVKKGSVVQLIDYICSTLQNRKIIVVLNMETIILDCEIIGNPKSFMNSDL 120
QLND V++G+ +KGS+VQLIDYICS ++ RK+IVVLNMETI+ E IGNP F +D
Sbjct: 60 VQLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDT 119
Query: 121 PILR--NAAENLP-----------------RSSGNNLAAKNASHNVQNFRPTVQPAYQPP 161
+ + N+P R+ + +N ++N +FRP+VQP+YQPP
Sbjct: 120 EAQKTFSGTGNIPPPNRVVFNEPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPP 179
Query: 162 PVYKGRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL 221
Y+ G I+KNEAPARVIPIAALNPYQGRWAIKARVTAKGD+RRYNNA+GDGKVFSFDL
Sbjct: 180 ASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDL 239
Query: 222 LDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNST 281
LD DGGEIRVTCFN++VDRFYD E GKVYLIS+GSLKPAQKNFNHLKNEWEIFL+S ST
Sbjct: 240 LDYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTST 299
Query: 282 VELCPDEDGSIPRQQFSFRPISDIENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRV 341
VELCPDEDGSIP+QQFSFRPISDIEN ++N+ILDVIGVVTSVNPSVPILRKNGMET RR+
Sbjct: 300 VELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRI 359
Query: 342 LNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSISTT 401
LNLKD SG++VE+TLWGEFCNR+G++L+EMVD+ P+LA+KAGKVSDFSGKS+G+IS+T
Sbjct: 360 LNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISST 419
Query: 402 QLFINPDFPEAHSLRDWFDQVGKDSASLSISKDFIPGG-PKNEIRKTVSQIKDEGLGRSD 460
QLFINPDFPEAH LR WFD GKD+AS SIS+D +PGG +NEIRK VSQIK+EGLGRSD
Sbjct: 420 QLFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSD 479
Query: 461 KPDWITVRATISFMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYR 520
KPDWITV+ATISF+KTD+FCYTACPLMIGD+QC+KKVTRSG W CDRCNQE +ECDYR
Sbjct: 480 KPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYR 539
Query: 521 YLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFV 580
YLLQ QI DHTGLTW+TAFQE GEEIMGC AK+LY +K E + ++ F EI++ +LF+ ++
Sbjct: 540 YLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYM 599
Query: 581 FKLKIKEELYGDEQKVKITVVKADQVNYSSESRYMLDLISK 621
KLKIKEE YGDEQ+VK+TVVK D+VNY+SES+YMLDL+ +
Sbjct: 600 LKLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYMLDLLVR 640
>AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
replication protein A 1A | chr2:2585215-2587601 FORWARD
LENGTH=617
Length = 617
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/616 (68%), Positives = 512/616 (83%), Gaps = 21/616 (3%)
Query: 26 VLDVALVSGGNNSQQQQRYRVVLSDAVSSHQAMLAAQLNDHVRNGRVKKGSVVQLIDYIC 85
VL++ ++ G + + Q+RYR ++SD VS+ AM+A QLND V++G+ +KGS+VQLIDYIC
Sbjct: 3 VLEIKMI-GRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYIC 61
Query: 86 STLQNRKIIVVLNMETIILDCEIIGNPKSFMNSDLPILR--NAAENLP------------ 131
S ++ RK+IVVLNMETI+ E IGNP F +D + + N+P
Sbjct: 62 SDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFNEPMV 121
Query: 132 -----RSSGNNLAAKNASHNVQNFRPTVQPAYQPPPVYKGRGAIVKNEAPARVIPIAALN 186
R+ + +N ++N +FRP+VQP+YQPP Y+ G I+KNEAPARVIPIAALN
Sbjct: 122 QHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIAALN 181
Query: 187 PYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVVDRFYDSIE 246
PYQGRWAIKARVTAKGD+RRYNNA+GDGKVFSFDLLD DGGEIRVTCFN++VDRFYD E
Sbjct: 182 PYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVTE 241
Query: 247 AGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRPISDIE 306
GKVYLIS+GSLKPAQKNFNHLKNEWEIFL+S STVELCPDEDGSIP+QQFSFRPISDIE
Sbjct: 242 VGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIE 301
Query: 307 NTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQ 366
N ++N+ILDVIGVVTSVNPSVPILRKNGMET RR+LNLKD SG++VE+TLWGEFCNR+G+
Sbjct: 302 NAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGR 361
Query: 367 RLQEMVDAGVFPILAVKAGKVSDFSGKSIGSISTTQLFINPDFPEAHSLRDWFDQVGKDS 426
+L+EMVD+ P+LA+KAGKVSDFSGKS+G+IS+TQLFINPDFPEAH LR WFD GKD+
Sbjct: 362 QLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDT 421
Query: 427 ASLSISKDFIPGG-PKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFMKTDTFCYTACP 485
AS SIS+D +PGG +NEIRK VSQIK+EGLGRSDKPDWITV+ATISF+KTD+FCYTACP
Sbjct: 422 ASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACP 481
Query: 486 LMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEE 545
LMIGD+QC+KKVTRSG W CDRCNQE +ECDYRYLLQ QI DHTGLTW+TAFQE GEE
Sbjct: 482 LMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEE 541
Query: 546 IMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLKIKEELYGDEQKVKITVVKADQ 605
IMGC AK+LY +K E + ++ F EI++ +LF+ ++ KLKIKEE YGDEQ+VK+TVVK D+
Sbjct: 542 IMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDK 601
Query: 606 VNYSSESRYMLDLISK 621
VNY+SES+YMLDL+ +
Sbjct: 602 VNYTSESKYMLDLLVR 617
>AT4G19130.1 | Symbols: | Replication factor-A protein 1-related |
chr4:10466618-10469092 REVERSE LENGTH=784
Length = 784
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/674 (49%), Positives = 464/674 (68%), Gaps = 56/674 (8%)
Query: 1 MSVNLTANAIPTIIGGDVNAK----PLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSSHQ 56
M V+LTA AI I+ G+V + P++QV D+ + ++R+R+VLSD HQ
Sbjct: 1 MEVSLTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMA-QQDPTRERFRMVLSDGTYLHQ 59
Query: 57 AMLAAQLNDHVRNGRVKKGSVVQLIDYICSTLQNRKIIVVLNMETIILDCEIIGNP---- 112
ML LN+ V+ G ++ GS+V+L ++ ++ R+I++V +E + +IIG+P
Sbjct: 60 GMLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGG 119
Query: 113 --KSFMNSDLPILRNAAENLPRSSG----NNL--AAKNASHNVQ----------NFRPTV 154
+D I N E + SG NN+ NA+ + Q + P+
Sbjct: 120 KHNDQRGADSGIKFNTTEQ--QGSGIRQVNNIEPGRSNAAISPQVGGTGSSVPASTTPST 177
Query: 155 QPAYQP--------------PP------------VYKGRGAIVKNEAPARVIPIAALNPY 188
+ P PP +Y RG + +NEAP ++IP+ AL+PY
Sbjct: 178 RAYSNPSSGNGVTRQDYARDPPTSYPHQPQPPPPMYANRGPVARNEAPPKIIPVNALSPY 237
Query: 189 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVVDRFYDSIEAG 248
GRW IKARVT K L++Y+N RG+GKVF+FDLLD+DGGEIRVTCFN+V D+FYD I G
Sbjct: 238 SGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFYDQIVVG 297
Query: 249 KVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRPISDIENT 308
+YLISRGSL+PAQKNFNHL+N++EI LD+ ST++ C +ED +IPR QF FR I DIE+
Sbjct: 298 NLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESM 357
Query: 309 DSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQRL 368
++N I+DVIG+V+S++P+V I RKNG T +R L LKD SGRSVE+T+WG+FCN EGQRL
Sbjct: 358 ENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQRL 417
Query: 369 QEMVDAGVFPILAVKAGKVSDFSGKSIGSISTTQLFINPDFPEAHSLRDWFDQVGKDSAS 428
Q + D+GVFP+LAVKAG++S+F+GK++ +I ++QLFI+PDF EA L++WF++ GK
Sbjct: 418 QSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPC 477
Query: 429 LSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFMKTDTFCYTACPLMI 488
+S+S++F G K ++RKT+SQIKDE LG S+KPDWITV ATI ++K D FCYTACP+M
Sbjct: 478 ISLSREF-SGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMN 536
Query: 489 GDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMG 548
GDR CSKKVT +G+ +W+C++C++ +ECDYRY+LQ QI DHT LT VTAFQEAGEEIMG
Sbjct: 537 GDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMG 596
Query: 549 CSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLKIKEELYGDEQKVKITVVKADQVNY 608
SAK+LY++KNE +D+++F +II+ F + FKLK+KEE + DEQ+VK TVVK D++NY
Sbjct: 597 ISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNY 656
Query: 609 SSESRYMLDLISKF 622
S+++R ML + K
Sbjct: 657 SADTRTMLGAMDKL 670
>AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A
protein 1-related | chr5:18398990-18401644 FORWARD
LENGTH=853
Length = 853
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/474 (62%), Positives = 379/474 (79%), Gaps = 5/474 (1%)
Query: 151 RPTVQPAYQP--PPVYKGRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYN 208
RP VQ AYQP PP+Y RG + +NEAP R+ PIAALNPYQGRW IK RVT+K DLRR+N
Sbjct: 270 RP-VQSAYQPQQPPMYVNRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSKADLRRFN 328
Query: 209 NARGDGKVFSFDLLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHL 268
N RG+GK+FSFDLLD+DGGEIRVTCFN VD+F+D I G VYLISRG+LKPAQKNFNHL
Sbjct: 329 NPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHL 388
Query: 269 KNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRPISDIENTDSNSILDVIGVVTSVNPSVP 328
N++EI LDS ST++ C D DG+IPR F FR I DIEN ++NS DVIG+V+S++P+V
Sbjct: 389 PNDYEIHLDSASTIQPCED-DGTIPRYHFHFRNIGDIENMENNSTTDVIGIVSSISPTVA 447
Query: 329 ILRKNGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVS 388
I+RKN E Q+R L LKD SGRSVE+T+WG FCN EGQ+LQ + D+GVFP+LA+KAG++
Sbjct: 448 IMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIG 507
Query: 389 DFSGKSIGSISTTQLFINPDFPEAHSLRDWFDQVGKDSASLSISKDFIPGGPKNEIRKTV 448
+F+GK + +I +Q FI PDFPEA LR W+++ G+++ SIS++F G + E+RK +
Sbjct: 508 EFNGKQVSTIGASQFFIEPDFPEARELRQWYEREGRNAHFTSISREF-SGVGRQEVRKVI 566
Query: 449 SQIKDEGLGRSDKPDWITVRATISFMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQCD 508
+QIKDE LG S+KPDWITV ATISFMK + FCYTACP+M GDR CSKKVT +G+ +W+C+
Sbjct: 567 AQIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWRCE 626
Query: 509 RCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFG 568
+C++ +ECDYRY+LQ Q+ DHT LTW TAFQEAGEEIMG SAK+LY++K E QD+++F
Sbjct: 627 KCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQDEEKFE 686
Query: 569 EIIKSKLFNHFVFKLKIKEELYGDEQKVKITVVKADQVNYSSESRYMLDLISKF 622
+II+S F ++FKLKIKEE Y DEQ+VK TVVKA+++NYSS +R+ML+ I K
Sbjct: 687 DIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSNTRFMLEAIDKL 740
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 1 MSVNLTANAIPTIIGGDVNAK----PLVQVLDVALVSG--GNNSQQQQRYRVVLSDAVSS 54
M+V+LT + ++ G+V ++ P++QV ++ L+ N + RY+ +LSD
Sbjct: 1 MAVSLTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDL 60
Query: 55 HQAMLAAQLNDHVRNGRVKKGSVVQLIDYICSTLQNRKIIVVLNMETIILDCEIIGNPKS 114
ML LN V G ++ GSV++L YIC+ +Q R+I+V++ +E I+ C IIGNPK
Sbjct: 61 AAGMLNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPKE 120
Query: 115 FMNSDL 120
+S +
Sbjct: 121 PGHSSI 126
>AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B |
chr5:2572107-2574879 FORWARD LENGTH=604
Length = 604
Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 210/637 (32%), Positives = 347/637 (54%), Gaps = 54/637 (8%)
Query: 1 MSVNLTANAIPTIIG------GDVNAKPLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSS 54
M ++T + I T++ V + +VQV+D L GN RY +D
Sbjct: 1 MENSVTQDGIATVLANQSLDSSSVRPEIVVQVVD--LKPAGN------RYTFSANDGKMK 52
Query: 55 HQAMLAAQLNDHVRNGRVKKGSVVQLIDYICSTLQNRKIIVVLNMETIILDCEIIGNPKS 114
+AML A L + +G+++ +++L++Y + + + + +I CE + S
Sbjct: 53 IKAMLPATLTSDIISGKIQNLGLIRLLEYTVNDIPGKSEEKYM----LITKCEAVA---S 105
Query: 115 FMNSDLPILRNAAENLPRSSGNNLAAKNASHNVQNFRPTVQPAYQPPPVYKGRGAIVKNE 174
++S++ A+ + + AK+AS + R PA R A+ +
Sbjct: 106 ALDSEIKAEIKASTGIMLKPKHEFVAKSASQIINEQRGNAAPA--------ARMAMTR-- 155
Query: 175 APARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 234
RV P+ +LNPYQG W IK RVT KG +R Y NARG+G VF+ +L D +G +I+ T F
Sbjct: 156 ---RVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMF 212
Query: 235 NSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPR 294
N+ +FYD E GKVY ISRGSLK A K F ++N++E+ L+ NS VE +E+ P
Sbjct: 213 NAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPE 272
Query: 295 QQFSFRPISDIEN-TDSNSILDVIGVVTSVNPSVPILRKNGMET-QRRVLNLKDSSGRSV 352
+F+F PI ++ + ++DVIGVV SV+P++ I RKN E +R + L D + ++V
Sbjct: 273 TKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTV 332
Query: 353 ELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSISTTQLFINPDFPEA 412
++LW + GQ L +M D P++A+K+ KV F G S+ +IS + + INP+ PEA
Sbjct: 333 VVSLWNDLATGIGQELLDMADN--HPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEA 390
Query: 413 HSLRDWFDQVGKDSASLSISKDFIPGGPKNEIRKTVSQ-------IKDEGLGRSDKPDWI 465
L+ W+D GK++ S+S + N R S + LG +KP +
Sbjct: 391 TKLKSWYDAEGKET-SMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGE-EKPVFF 448
Query: 466 TVRATISFMKTD-TFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQ 524
+ RA ISF+K D T Y AC + C+KKVT + + + C+ C ++ +EC RY++
Sbjct: 449 STRAYISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMA 502
Query: 525 AQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLK 584
++ D TG TW++AF + E+I+GC+A +L LK+EE + + F +K ++ +F++
Sbjct: 503 VKVSDSTGETWLSAFNDEAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRIS 562
Query: 585 IKEELYGDEQKVKITVVKADQVNYSSESRYMLDLISK 621
+ ++ Y E++ +ITV +++++E+R +L ISK
Sbjct: 563 VSQQEYNSEKRQRITVRGVSPIDFAAETRLLLQDISK 599
>AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A
protein 1-related | chr5:24549682-24552641 REVERSE
LENGTH=629
Length = 629
Score = 327 bits (839), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 215/652 (32%), Positives = 352/652 (53%), Gaps = 62/652 (9%)
Query: 1 MSVNLTANAIPTIIGGDV------NAKPLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSS 54
M ++T +AI T++ ++ +VQV+D+ + GN RY +D +
Sbjct: 1 MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPI--GN------RYTFSANDGKTK 52
Query: 55 HQAMLAAQLNDHVRNGRVKKGSVVQLIDYICSTLQNR--KIIVVLNMETI--ILDCEIIG 110
+AM A L + +G+++ +++LID+ + + ++ K +V E + +LD EI
Sbjct: 53 VKAMFTASLTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVTKCEAVGSVLDSEINL 112
Query: 111 NPKSFMNSDLPILRNAAENLPRSSGNNLA-------------AKNASHNVQNFRPTVQPA 157
+ KS + E+ P S N++ AK+AS + R PA
Sbjct: 113 DSKSGEEEAREPKKQKLEHSPVSPLNDVVSTGITLKPKQEFVAKSASQIMSEQRGNAAPA 172
Query: 158 YQPPPVYKGRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVF 217
R A+ + RV P+ +LNPYQG W IK RVT KG +R Y NARG+G VF
Sbjct: 173 --------ARMAMTR-----RVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVF 219
Query: 218 SFDLLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLD 277
+ +L D +G +I+ T FN +F+D + GKVY ISRGSLK A K F ++N++E+ L+
Sbjct: 220 NVELTDEEGTQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLN 279
Query: 278 SNSTVELCPDEDGSIPRQQFSFRPISDIE-NTDSNSILDVIGVVTSVNPSVPILRKNGME 336
NS VE E+ IP +F+F PI ++ + ++D+IGVV SV+P++ I R+ E
Sbjct: 280 ENSEVEEASSEEMFIPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNE 339
Query: 337 T-QRRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSI 395
+R + L D S ++V ++LW + GQ L +M D P++A+K+ KV DF G S+
Sbjct: 340 MIPKRDITLADESRKTVVVSLWNDLATGIGQELLDMADQS--PVIAIKSLKVGDFQGVSL 397
Query: 396 GSISTTQLFINPDFPEAHSLRDWFDQVGKDSASLSISKDFIPGGPKNEIRK------TVS 449
+IS + + INP+ PEA L+ WFD GK+ + SI P KN R +S
Sbjct: 398 STISRSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSA-KNGSRSLYTDRVLLS 456
Query: 450 QIKDEGLGRSDKPDWITVRATISFMKTD-TFCYTACPLMIGDRQCSKKVTRSGNMSWQCD 508
I +KP + + RA ISF+K D T Y AC + C+KKVT + + + C+
Sbjct: 457 HITSNPSLFEEKPVFFSTRAYISFIKPDQTMWYQAC------KTCNKKVTEALDSGYWCE 510
Query: 509 RCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFG 568
C +++EEC RY++ ++ D +G TW+++F + E+I+GCSA EL LK+EE + + +
Sbjct: 511 GCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGEVNEYQ 570
Query: 569 EIIKSKLFNHFVFKLKIKEELYGDEQKVKITVVKADQVNYSSESRYMLDLIS 620
+K ++ VF++ + + Y E++ ++TV +++++E+R +L IS
Sbjct: 571 TKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 622
>AT1G52950.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr1:19725483-19728007 FORWARD LENGTH=566
Length = 566
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 168/396 (42%), Gaps = 29/396 (7%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNN-ARGDGKVFSFDLLDSDGGEIRVTCFNSVVDR 240
I L P++ W I+ ++ L +N+ +G G + L D DG +I+ + +
Sbjct: 10 IKNLKPFKTSWCIQVKI-----LHAWNHYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLK 64
Query: 241 FYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFR 300
++ G +I S+ A + + + I + S++ P I +F
Sbjct: 65 LQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFSNSPTISDEIWLDLVNFN 124
Query: 301 PISDIENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEF 360
+ D N +++VIG + +V + +L G T++ L+D+ + +LWG+F
Sbjct: 125 DVLS-GTLDQNKLVNVIGQLVNVG-EIQLLDVQGKPTKKIDFQLRDTDDNRLPCSLWGKF 182
Query: 361 CNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSIS----TTQLFINPDFPEAHSLR 416
++ + +E V G I ++ K+ + K I SIS +++FINP E +
Sbjct: 183 ADQIHKVSKESV--GGIVICLIRWAKLGHY--KEIRSISNAFDASEVFINPILTEVEEFK 238
Query: 417 DWFDQVGKDSASLSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFMKT 476
+ G + F P + E K + L S + + + + +I +
Sbjct: 239 NLLPSDGLALTIMEPKPRFQPLRVREERSKQFERKTIAELKASFEVEKVKIICSILSIDL 298
Query: 477 DTFCYTACPLMIGDRQCSKKVTRSGN--------MSWQCDRCNQEFEECDYRYLLQAQIL 528
D Y + +C+KKV +S + ++CD+C + + RY L I+
Sbjct: 299 DYSWYYYAHI-----KCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIM 353
Query: 529 DHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDD 564
D+TG + + F E I+GC A EL + NE+ D+
Sbjct: 354 DNTGESKLMLFDSFVEPIIGCPATELLDVTNEQIDE 389